Gene: AT2G38220

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT2G38220
  • Transcript Identifier AT2G38220.1
  • Gene Type Coding gene
  • Location Chr2 : 16008112-16010538 : positive

Gene Family Information

  • ID HOM05D001948
  • #Genes/#Species 339/86
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT2G38220.1
  • symbol APD3
  • full_name ABERRANT POLLEN DEVELOPMENT 3
  • uniprot B3H754

Descriptions

  • Description RING/U-box superfamily protein
  • Computational description RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G38195.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016567
IEA
Gene Ontologyprotein ubiquitination
GO:0000278
IMP
Gene Ontologymitotic cell cycle1
GO:0009555
IMP
Gene Ontologypollen development1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004842
IEA
Gene Ontologyubiquitin-protein transferase activity
GO:0004842
IEA
InterProubiquitin-protein transferase activity
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0016740
IEA
GOA Databasetransferase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISM
Gene Ontologynucleus
GO:0005768
ISS
Gene Ontologyendosome
GO:0009705
ISS
Gene Ontologyplant-type vacuole membrane
GO:0012505
IEA
GOA Databaseendomembrane system
GO:0005774
IEA
GOA Databasevacuolar membrane
GO:0005773
IEA
GOA Databasevacuole
GO:0016021
IEA
GOA Databaseintegral component of membrane
GO:0016020
IEA
GOA Databasemembrane

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001841 Zinc finger, RING-type
IPR032010 Domain of unknown function DUF4793
IPR044586 E3 ubiquitin-protein ligase APD1/2/3/4
IPR013083 Zinc finger, RING/FYVE/PHD-type
IPR032008 Domain of unknown function DUF4792
Mapman id Description
13.7.1.4 Cell cycle organisation.germline development.male germ cell division.E3 ubiquitin protein ligase (APD)