Gene: AT2G38185

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT2G38185
  • Transcript Identifier AT2G38185.2
  • Gene Type Coding gene
  • Location Chr2 : 16000155-16002699 : positive

Gene Family Information

  • ID HOM05D001948
  • #Genes/#Species 339/86
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT2G38185.2
  • symbol APD1
  • full_name ABERRANT POLLEN DEVELOPMENT 1
  • uniprot Q0WS06

Descriptions

  • Description RING/U-box superfamily protein
  • Computational description RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G38220.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016567
IEA
Gene Ontologyprotein ubiquitination
GO:0000278
IMP
Gene Ontologymitotic cell cycle1
GO:0009555
IMP
Gene Ontologypollen development1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004842
IEA
Gene Ontologyubiquitin-protein transferase activity
GO:0004842
IEA
InterProubiquitin-protein transferase activity
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0016740
IEA
GOA Databasetransferase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISM
Gene Ontologynucleus
GO:0005739
ISM
Gene Ontologymitochondrion
GO:0005768
IDA
Gene Ontologyendosome1
GO:0009705
IDA
Gene Ontologyplant-type vacuole membrane1
GO:0012505
IEA
GOA Databaseendomembrane system
GO:0005774
IEA
GOA Databasevacuolar membrane
GO:0005773
IEA
GOA Databasevacuole
GO:0016021
IEA
GOA Databaseintegral component of membrane
GO:0016020
IEA
GOA Databasemembrane

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR032008 Domain of unknown function DUF4792
IPR001841 Zinc finger, RING-type
IPR044586 E3 ubiquitin-protein ligase APD1/2/3/4
IPR013083 Zinc finger, RING/FYVE/PHD-type
IPR032010 Domain of unknown function DUF4793
Mapman id Description
13.7.1.4 Cell cycle organisation.germline development.male germ cell division.E3 ubiquitin protein ligase (APD)