Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A515T32 Lonicera japonica HOM05D001670 ORTHO05D002980 1.5e-33 145.6 73 100.0
Lj9C563G7 Lonicera japonica HOM05D001670 ORTHO05D002980 2.7e-27 124.8 65 95.4
Lj7C538T12 Lonicera japonica HOM05D001670 ORTHO05D002980 2.3e-26 121.7 64 93.8
Lsat_1_v5_gn_7_10221 Lactuca sativa HOM05D001670 ORTHO05D002980 6.8e-26 120.2 65 92.3
Dinv44111 Davidia involucrata HOM05D001670 ORTHO05D002980 2.0e-25 118.6 65 89.2
CSS0045110 Camellia sinensis var. sinensis HOM05D001670 ORTHO05D002980 4.4e-25 117.5 65 87.7
MELO3C005963.2 Cucumis melo HOM05D001670 ORTHO05D002980 4.4e-25 117.5 65 89.2
CsaV3_3G007410 Cucumis sativus L. HOM05D001670 ORTHO05D002980 4.4e-25 117.5 65 89.2
CAN.G899.12 Capsicum annuum HOM05D001670 ORTHO05D002980 5.7e-25 117.1 65 89.2
Solyc01g090780.3 Solanum lycopersicum HOM05D001670 ORTHO05D002980 5.7e-25 117.1 65 89.2
Sopen01g036510 Solanum pennellii HOM05D001670 ORTHO05D002980 5.7e-25 117.1 65 89.2
RcHm_v2.0_Chr1g0348711 Rosa chinensis HOM05D001670 ORTHO05D002980 7.5e-25 116.7 70 84.3
Cc02_g24610 Coffea canephora HOM05D001670 ORTHO05D002980 9.8e-25 116.3 65 86.2
MD02G1214300 Malus domestica HOM05D001670 ORTHO05D002980 9.8e-25 116.3 65 90.8
Oeu000038.3 Olea europaea HOM05D001670 ORTHO05D002980 9.8e-25 116.3 65 87.7
SalBow5G2000 Salvia bowleyana HOM05D001670 ORTHO05D002980 9.8e-25 116.3 65 86.2
FAN10G0390 Fragaria x ananassa HOM05D001670 ORTHO05D002980 1.3e-24 115.9 70 82.9
HanXRQChr04g0123421 Helianthus annuus HOM05D001670 ORTHO05D002980 1.7e-24 115.5 65 89.2
HanXRQChr06g0168951 Helianthus annuus HOM05D001670 ORTHO05D002980 1.7e-24 115.5 65 87.7
Nitab4.5_0002304g0030 Nicotiana tabacum HOM05D001670 ORTHO05D002980 1.7e-24 115.5 65 87.7
Peaxi162Scf00377g00038 Petunia axillaris HOM05D001670 ORTHO05D002980 1.7e-24 115.5 65 87.7
ECA236G0609 Erigeron canadensis HOM05D001670 ORTHO05D002980 2.2e-24 115.2 65 87.7
Sabra02G0111500 Salix brachista HOM05D001670 ORTHO05D002980 2.2e-24 115.2 65 89.2
SGA_v2.0_scaffold153G36957 Striga asiatica HOM05D001670 ORTHO05D002980 2.2e-24 115.2 65 87.7
SGA_v2.0_scaffold399G50813 Striga asiatica HOM05D001670 ORTHO05D002980 2.2e-24 115.2 65 87.7
MD07G1112500 Malus domestica HOM05D001670 ORTHO05D002980 2.8e-24 114.8 65 89.2
Cpa.g.sc587.1 Carica papaya HOM05D001670 ORTHO05D002980 3.7e-24 114.4 64 90.6
Nitab4.5_0000706g0120 Nicotiana tabacum HOM05D001670 ORTHO05D002980 3.7e-24 114.4 65 86.2
vmacro21039 Vaccinium macrocarpon HOM05D001670 ORTHO05D002980 3.7e-24 114.4 65 86.2
FvH4_7g10770 Fragaria vesca HOM05D001670 ORTHO05D002980 4.9e-24 114.0 70 81.4
FAN03G2300 Fragaria x ananassa HOM05D001670 ORTHO05D002980 4.9e-24 114.0 70 81.4
FAN06G0311 Fragaria x ananassa HOM05D001670 ORTHO05D002980 4.9e-24 114.0 70 81.4
FAN06G1683 Fragaria x ananassa HOM05D001670 ORTHO05D002980 4.9e-24 114.0 70 81.4
FAN10G2564 Fragaria x ananassa HOM05D001670 ORTHO05D002980 4.9e-24 114.0 70 81.4
Rhsim01G0135600 Rhododendron simsii HOM05D001670 ORTHO05D002980 4.9e-24 114.0 65 86.2
Potri.014G058800 Populus trichocarpa HOM05D001670 ORTHO05D002980 6.3e-24 113.6 65 89.2
Manes.05G050200 Manihot esculenta HOM05D001670 ORTHO05D002980 1.1e-23 112.8 65 87.7
FAN01G0667 Fragaria x ananassa HOM05D001670 ORTHO05D002980 1.4e-23 112.5 70 80.0
Prupe.2G135900 Prunus persica HOM05D001670 ORTHO05D002980 1.4e-23 112.5 65 84.6
PGR042G0136 Punica granatum HOM05D001670 ORTHO05D002980 1.4e-23 112.5 72 81.9
Potri.002G143000 Populus trichocarpa HOM05D001670 ORTHO05D002980 2.4e-23 111.7 64 89.1
Nn6g33938 Nelumbo nucifera HOM05D001670 ORTHO05D002980 3.1e-23 111.3 65 83.1
Sed0002470 Sechium edule HOM05D001670 ORTHO05D002980 3.1e-23 111.3 64 87.5
Lalb_Chr13g0290371 Lupinus albus HOM05D001670 ORTHO05D002980 4.1e-23 110.9 65 84.6
Ca_23116_v3 Cicer arietinum L. HOM05D001670 ORTHO05D002980 7.0e-23 110.2 65 84.6
COL.COLO4_12469 Corchorus olitorius HOM05D001670 ORTHO05D002980 7.0e-23 110.2 65 84.6
Eucgr.E01609 Eucalyptus grandis HOM05D001670 ORTHO05D002980 9.1e-23 109.8 72 76.4
CANSAT21G0618 Cannabis sativa HOM05D001670 ORTHO05D002980 1.2e-22 109.4 64 87.5
MSTRG.20721 Avicennia marina HOM05D001670 ORTHO05D002980 1.6e-22 109.0 65 81.5
Oeu061519.1 Olea europaea HOM05D001670 ORTHO05D002980 1.6e-22 109.0 68 80.9
DCAR_025093 Daucus carota HOM05D001670 ORTHO05D002980 2.0e-22 108.6 65 83.1
Duzib133G0195 Durio zibethinus HOM05D001670 ORTHO05D002980 2.0e-22 108.6 65 83.1
QL04p035871 Quercus lobata HOM05D001670 ORTHO05D002980 2.7e-22 108.2 64 87.5
Ciclev10018430m.g Citrus clementina HOM05D001670 ORTHO05D002980 3.5e-22 107.8 64 84.4
Glyma.07G108700 Glycine max HOM05D001670 ORTHO05D002980 3.5e-22 107.8 67 82.1
Atru.chr5.219 Acer truncatum HOM05D001670 ORTHO05D002980 4.5e-22 107.5 71 76.1
Glyma.03G118400 Glycine max HOM05D001670 ORTHO05D002980 4.5e-22 107.5 67 80.6
Oeu064576.1 Olea europaea HOM05D001670 ORTHO05D002980 4.5e-22 107.5 65 80.0
PSO104G0201 Papaver somniferum HOM05D001670 ORTHO05D002980 4.5e-22 107.5 68 76.5
PSO421G0693 Papaver somniferum HOM05D001670 ORTHO05D002980 4.5e-22 107.5 68 76.5
Hund27384 Selenicereus undatus HOM05D001670 ORTHO05D002980 4.5e-22 107.5 68 77.9
VMungo0331G0876 Vigna mungo HOM05D001670 ORTHO05D002980 4.5e-22 107.5 67 80.6
Duzib268G0141 Durio zibethinus HOM05D001670 ORTHO05D002980 5.9e-22 107.1 65 81.5
Gohir.A12G095700 Gossypium hirsutum HOM05D001670 ORTHO05D002980 1.3e-21 105.9 66 83.3
Gohir.D12G098300 Gossypium hirsutum HOM05D001670 ORTHO05D002980 1.3e-21 105.9 66 83.3
Gorai.008G107100 Gossypium raimondii HOM05D001670 ORTHO05D002980 1.3e-21 105.9 66 83.3
TAR375G0686 Trochodendron aralioides HOM05D001670 ORTHO05D002980 1.3e-21 105.9 65 78.5
Phvul.010G056800 Phaseolus vulgaris HOM05D001670 ORTHO05D002980 1.7e-21 105.5 65 80.0
Migut.B01578 Erythranthe guttata HOM05D001670 ORTHO05D002980 3.8e-21 104.4 65 80.0
GSVIVG01018178001 Vitis vinifera HOM05D001670 ORTHO05D002980 3.8e-21 104.4 65 78.5
Dinv06565 Davidia involucrata HOM05D001670 ORTHO05D002980 6.6e-21 103.6 65 80.0
Gohir.D11G082333 Gossypium hirsutum HOM05D001670 ORTHO05D002980 8.6e-21 103.2 66 81.8
Gorai.007G088100 Gossypium raimondii HOM05D001670 ORTHO05D002980 8.6e-21 103.2 66 81.8
GSVIVG01000874001 Vitis vinifera HOM05D001670 ORTHO05D002980 8.6e-21 103.2 64 76.6
Atru.chr1.760 Acer truncatum HOM05D001670 ORTHO05D002980 1.5e-20 102.4 65 73.8
TWI59G0301 Tripterygium wilfordii HOM05D001670 ORTHO05D002980 1.5e-20 102.4 65 81.5
CiPaw.13G031300 Carya illinoinensis HOM05D001670 ORTHO05D002980 1.9e-20 102.1 65 81.5
Glyma.03G118200 Glycine max HOM05D001670 ORTHO05D002980 1.9e-20 102.1 67 77.6
AUR62004150 Chenopodium quinoa HOM05D001670 ORTHO05D002980 2.5e-20 101.7 68 75.0
AUR62013711 Chenopodium quinoa HOM05D001670 ORTHO05D002980 2.5e-20 101.7 68 75.0
Gohir.A11G078000 Gossypium hirsutum HOM05D001670 ORTHO05D002980 3.3e-20 101.3 66 80.3
Medtr8g005820 Medicago truncatula HOM05D001670 ORTHO05D002980 3.3e-20 101.3 73 72.6
Thecc.01G385600 Theobroma cacao HOM05D001670 ORTHO05D002980 3.3e-20 101.3 64 82.8
Lsat_1_v5_gn_1_88920 Lactuca sativa HOM05D000207 ORTHO05D001482 4.2e-20 100.9 61 80.3
CiPaw.14G024400 Carya illinoinensis HOM05D001670 ORTHO05D002980 5.5e-20 100.5 67 77.6
TWI14G1227 Tripterygium wilfordii HOM05D001670 ORTHO05D002980 9.5e-20 99.8 64 79.7
A09p69250 Brassica napus HOM05D001670 ORTHO05D002980 1.2e-19 99.4 62 82.3
C08p54070 Brassica napus HOM05D001670 ORTHO05D002980 1.2e-19 99.4 62 82.3
BolC8t52916H Brassica oleracea HOM05D001670 ORTHO05D002980 1.2e-19 99.4 62 82.3
BraA09t42277Z Brassica rapa HOM05D001670 ORTHO05D002980 1.2e-19 99.4 62 82.3
CARHR000250 Cardamine hirsuta HOM05D001670 ORTHO05D002980 1.2e-19 99.4 62 82.3
Thhalv10006521m.g Eutrema salsugineum HOM05D001670 ORTHO05D002980 1.2e-19 99.4 62 82.3
Sp1g00220 Schrenkiella parvula HOM05D001670 ORTHO05D002980 1.2e-19 99.4 62 82.3
Aqoxy7G00778 Aquilegia oxysepala HOM05D001670 ORTHO05D002980 1.6e-19 99.0 64 75.0
A10p00140 Brassica napus HOM05D001670 ORTHO05D002980 1.6e-19 99.0 62 80.6
BraA10t42293Z Brassica rapa HOM05D001670 ORTHO05D002980 1.6e-19 99.0 62 80.6
DCAR_015867 Daucus carota HOM05D001670 ORTHO05D002980 2.1e-19 98.6 52 92.3
Lj3g0005567 Lotus japonicus HOM05D001670 ORTHO05D002980 2.1e-19 98.6 65 78.5
Hma1.2p1_0341F.1_g130260 Hydrangea macrophylla HOM05D001670 ORTHO05D002980 2.8e-19 98.2 64 75.0
PSO017G3667 Papaver somniferum HOM05D001670 ORTHO05D002980 2.8e-19 98.2 64 75.0
Lsat_1_v5_gn_9_55460 Lactuca sativa HOM05D001670 ORTHO05D016190 3.6e-19 97.8 55 87.3
Psat4g209400 Pisum sativum HOM05D001670 ORTHO05D002980 3.6e-19 97.8 65 72.3
Psat4g209440 Pisum sativum HOM05D001670 ORTHO05D002980 3.6e-19 97.8 65 72.3
AT1G02080 Arabidopsis thaliana HOM05D001670 ORTHO05D002980 6.1e-19 97.1 62 80.6
Thecc.03G154100 Theobroma cacao HOM05D001670 ORTHO05D002980 6.1e-19 97.1 64 75.0
Aqoxy6G02523 Aquilegia oxysepala HOM05D001670 ORTHO05D002980 8.0e-19 96.7 64 73.4
Lsat_1_v5_gn_2_15720 Lactuca sativa HOM05D001670 ORTHO05D016190 8.0e-19 96.7 61 75.4
THA.LOC104801485 Tarenaya hassleriana HOM05D001670 ORTHO05D002980 8.0e-19 96.7 62 77.4
CSS0024648 Camellia sinensis var. sinensis HOM05D001670 ORTHO05D002980 1.0e-18 96.3 55 83.6
Carub.0001s0015 Capsella rubella HOM05D001670 ORTHO05D002980 1.0e-18 96.3 62 80.6
Manes.01G270100 Manihot esculenta HOM05D001670 ORTHO05D002980 1.0e-18 96.3 72 73.6
CBR_g37673 Chara braunii HOM05D001670 ORTHO05D002980 1.4e-18 95.9 64 73.4
Aa31LG1G11410 Aethionema arabicum HOM05D001670 ORTHO05D002980 1.8e-18 95.5 62 80.6
AL1G10200 Arabidopsis lyrata HOM05D001670 ORTHO05D002980 1.8e-18 95.5 62 79.0
TAR629G1646 Trochodendron aralioides HOM05D001670 ORTHO05D002980 1.8e-18 95.5 63 76.2
CDE11G1219 Ceratophyllum demersum HOM05D001670 ORTHO05D002980 3.0e-18 94.7 64 67.2
Duzib068G1107 Durio zibethinus HOM05D001670 ORTHO05D002980 4.0e-18 94.4 61 78.7
BcaB03g13629 Brassica carinata HOM05D001670 ORTHO05D002980 6.8e-18 93.6 62 77.4
BcaNung05287 Brassica carinata HOM05D001670 ORTHO05D002980 6.8e-18 93.6 62 77.4
C05p00130 Brassica napus HOM05D001670 ORTHO05D002980 6.8e-18 93.6 62 77.4
BolC5t28803H Brassica oleracea HOM05D001670 ORTHO05D002980 6.8e-18 93.6 62 77.4
MBI04_g09509_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D002980 6.8e-18 93.6 61 77.0
CSS0049488 Camellia sinensis var. sinensis HOM05D001670 ORTHO05D002980 1.2e-17 92.8 65 72.3
Haze_02720 Corylus avellana HOM05D001670 ORTHO05D002980 1.2e-17 92.8 65 73.8
THA.LOC104814077 Tarenaya hassleriana HOM05D001670 ORTHO05D002980 1.2e-17 92.8 62 74.2
BcaB02g07859 Brassica carinata HOM05D001670 ORTHO05D002980 1.5e-17 92.4 61 78.7
MD07G1112800 Malus domestica HOM05D001670 ORTHO05D002980 1.5e-17 92.4 55 85.5
BcaC08g44594 Brassica carinata HOM05D001670 ORTHO05D002980 2.0e-17 92.0 61 77.0
C06p20660 Brassica napus HOM05D001670 ORTHO05D002980 2.0e-17 92.0 61 77.0
BolC6t37249H Brassica oleracea HOM05D001670 ORTHO05D002980 2.0e-17 92.0 61 77.0
Rhsim03G0166300 Rhododendron simsii HOM05D001670 ORTHO05D002980 2.0e-17 92.0 65 69.2
PSO170G5961 Papaver somniferum HOM05D001670 ORTHO05D002980 2.6e-17 91.7 64 70.3
arahy.Tifrunner.gnm1.ann1.5NE8AH Arachis hypogaea HOM05D001670 ORTHO05D002980 3.4e-17 91.3 57 78.9
Actinidia20640 Actinidia chinensis HOM05D001670 ORTHO05D002980 4.4e-17 90.9 57 78.9
A07p21180 Brassica napus HOM05D001670 ORTHO05D002980 4.4e-17 90.9 61 75.4
BraA07t29805Z Brassica rapa HOM05D001670 ORTHO05D002980 4.4e-17 90.9 61 75.4
Cfa011137 Carpinus fangiana HOM05D001670 ORTHO05D002980 4.4e-17 90.9 65 72.3
ATR0317G075 Amborella trichopoda HOM05D001670 ORTHO05D002980 7.5e-17 90.1 69 66.7
TPR.G28734 Trifolium pratense HOM05D001670 ORTHO05D002980 9.8e-17 89.7 63 71.4
HPP92_007431 Vanilla planifolia HOM05D001670 ORTHO05D002980 9.8e-17 89.7 64 65.6
SMO340G0305 Selaginella moellendorffii HOM05D001670 ORTHO05D002980 1.3e-16 89.4 64 70.3
arahy.Tifrunner.gnm1.ann1.1V1Y36 Arachis hypogaea HOM05D001670 ORTHO05D002980 2.8e-16 88.2 56 76.8
Zm00001eb000340 Zea mays HOM05D001670 ORTHO05D002980 3.7e-16 87.8 61 72.1
Lalb_Chr07g0195691 Lupinus albus HOM05D001670 ORTHO05D002980 4.9e-16 87.4 48 89.6
Zm00001eb404410 Zea mays HOM05D001670 ORTHO05D002980 6.3e-16 87.0 61 73.8
Hund17061 Selenicereus undatus HOM05D001670 ORTHO05D002980 1.1e-15 86.3 61 70.5
Os10g0556700 Oryza sativa ssp. japonica HOM05D001670 ORTHO05D002980 1.4e-15 85.9 61 75.4
Ah.05g173600 Amaranthus hybridus HOM05D001670 ORTHO05D002980 3.2e-15 84.7 73 61.6
C09p00060 Brassica napus HOM05D001670 ORTHO05D002980 3.2e-15 84.7 62 67.7
BraA09t35680Z Brassica rapa HOM05D001670 ORTHO05D002980 3.2e-15 84.7 62 67.7
ECA234G0500 Erigeron canadensis HOM05D001670 ORTHO05D002980 4.1e-15 84.3 64 65.6
Mapoly0037s0011 Marchantia polymorpha HOM05D001670 ORTHO05D002980 4.1e-15 84.3 64 62.5
Lsat_1_v5_gn_4_44320 Lactuca sativa HOM05D001670 ORTHO05D002980 9.2e-15 83.2 64 65.6
EL10Ac1g00822 Beta vulgaris HOM05D001670 ORTHO05D002980 1.6e-14 82.4 63 66.7
vmacro06812 Vaccinium macrocarpon HOM05D001670 ORTHO05D002980 2.9e-13 78.2 57 68.4
Pp3c21_18770 Physcomitrium patens HOM05D001670 ORTHO05D002980 8.6e-13 76.6 69 60.9
Os03g0102366 Oryza sativa ssp. japonica HOM05D001670 ORTHO05D002980 1.1e-12 76.3 55 69.1
Pp3c6_26730 Physcomitrium patens HOM05D001670 ORTHO05D002980 1.9e-12 75.5 64 54.7
Pp3c5_6540 Physcomitrium patens HOM05D001670 ORTHO05D002980 4.3e-12 74.3 64 51.6
BcaC07g42342 Brassica carinata HOM05D001670 ORTHO05D002980 2.1e-11 72.0 62 66.1
vmacro08837 Vaccinium macrocarpon HOM05D001670 ORTHO05D002980 8.0e-11 70.1 60 61.7
SHI13576 Sapria himalayana HOM05D001670 ORTHO05D002980 1.5e-09 65.9 68 52.9
Actinidia00132 Actinidia chinensis HOM05D001670 ORTHO05D010670 7.5e-09 63.5 40 75.0
MBI17_g09694_MAGBIO Magnolia biondii HOM05D000980 ORTHO05D000649 1.7e-08 62.4 45 66.7
AagrBONN_evm.TU.Sc2ySwM_362.1757 Anthoceros agrestis HOM05D001670 ORTHO05D002980 2.2e-08 62.0 64 45.3
MCO11G155 Micromonas commoda HOM05D001670 ORTHO05D002980 2.9e-08 61.6 69 46.4
Lsat_1_v5_gn_5_41360 Lactuca sativa HOM05D000207 ORTHO05D016190 2.0e-06 55.5 38 73.7


User provided reference genes

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