Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3g0007947 Lotus japonicus HOM05D004152 ORTHO05D004878 7.3e-136 487.3 252 100.0
Ca_20428_v3 Cicer arietinum L. HOM05D004152 ORTHO05D004878 1.6e-103 379.8 252 78.6
Psat7g255640 Pisum sativum HOM05D004152 ORTHO05D004878 6.2e-103 377.9 253 78.7
Medtr4g011180 Medicago truncatula HOM05D004152 ORTHO05D004878 1.3e-100 370.2 251 78.9
Glyma.07G032200 Glycine max HOM05D004152 ORTHO05D004878 3.8e-100 368.6 255 80.0
VMungo0331G1163 Vigna mungo HOM05D004152 ORTHO05D004878 5.4e-99 364.8 252 77.4
Lalb_Chr25g0279491 Lupinus albus HOM05D004152 ORTHO05D004878 3.5e-98 362.1 223 83.4
Glyma.08G210500 Glycine max HOM05D004152 ORTHO05D004878 2.1e-95 352.8 255 74.9
arahy.Tifrunner.gnm1.ann1.HAI1EF Arachis hypogaea HOM05D004152 ORTHO05D004878 1.4e-94 350.1 256 74.2
QL12p011587 Quercus lobata HOM05D004152 ORTHO05D004878 9.0e-94 347.4 262 69.8
Phvul.010G153800 Phaseolus vulgaris HOM05D004152 ORTHO05D004878 2.6e-93 345.9 257 73.2
MD04G1062100 Malus domestica HOM05D004152 ORTHO05D004878 1.7e-92 343.2 253 71.9
Gorai.012G137200 Gossypium raimondii HOM05D004152 ORTHO05D004878 1.4e-91 340.1 257 70.8
Gohir.D04G150500 Gossypium hirsutum HOM05D004152 ORTHO05D004878 1.9e-91 339.7 258 70.2
Gohir.D04G150600 Gossypium hirsutum HOM05D004152 ORTHO05D004878 1.9e-91 339.7 258 70.2
arahy.Tifrunner.gnm1.ann1.Y2K32V Arachis hypogaea HOM05D004152 ORTHO05D004878 7.1e-91 337.8 257 70.4
Gohir.A04G110300 Gossypium hirsutum HOM05D004152 ORTHO05D004878 9.3e-91 337.4 258 70.5
Duzib052G0353 Durio zibethinus HOM05D004152 ORTHO05D004878 3.5e-90 335.5 247 72.1
SalBow6G1227 Salvia bowleyana HOM05D004152 ORTHO05D004878 1.0e-89 334.0 187 86.6
ClCG01G004210 Citrullus lanatus HOM05D004152 ORTHO05D004878 1.3e-89 333.6 249 71.9
COL.COLO4_08312 Corchorus olitorius HOM05D004152 ORTHO05D004878 1.3e-89 333.6 254 71.7
Thecc.02G150400 Theobroma cacao HOM05D004152 ORTHO05D004878 1.3e-89 333.6 260 70.4
MD06G1055800 Malus domestica HOM05D004152 ORTHO05D004878 2.3e-89 332.8 256 69.5
Haze_18794 Corylus avellana HOM05D004152 ORTHO05D004878 3.9e-89 332.0 254 70.9
MSTRG.12117 Avicennia marina HOM05D004152 ORTHO05D004878 5.1e-89 331.6 258 70.9
Cpa.g.sc29.188 Carica papaya HOM05D004152 ORTHO05D004878 1.5e-88 330.1 248 70.6
CANSAT21G2552 Cannabis sativa HOM05D004152 ORTHO05D004878 2.5e-88 329.3 255 71.0
Manes.01G082700 Manihot esculenta HOM05D004152 ORTHO05D004878 3.3e-88 328.9 250 70.4
Gorai.005G214700 Gossypium raimondii HOM05D004152 ORTHO05D004878 4.3e-88 328.6 259 69.9
Gohir.D02G191900 Gossypium hirsutum HOM05D004152 ORTHO05D004878 5.6e-88 328.2 259 70.3
Sed0004379 Sechium edule HOM05D004152 ORTHO05D004878 5.6e-88 328.2 251 69.3
MELO3C005518.2 Cucumis melo HOM05D004152 ORTHO05D004878 7.4e-88 327.8 240 75.8
Sabra03G0074600 Salix brachista HOM05D004152 ORTHO05D004878 1.3e-87 327.0 254 69.3
FAN13G0727 Fragaria x ananassa HOM05D004152 ORTHO05D004878 2.8e-87 325.9 256 66.8
SGA_v2.0_scaffold104G30172 Striga asiatica HOM05D004152 ORTHO05D004878 2.8e-87 325.9 260 69.6
TWI60G0584 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 2.8e-87 325.9 239 72.4
CsaV3_5G004400 Cucumis sativus L. HOM05D004152 ORTHO05D004878 3.7e-87 325.5 246 72.8
PGR031G2826 Punica granatum HOM05D004152 ORTHO05D004878 3.7e-87 325.5 257 67.3
CiPaw.16G091100 Carya illinoinensis HOM05D004152 ORTHO05D004878 4.8e-87 325.1 260 68.5
Migut.A01125 Erythranthe guttata HOM05D004152 ORTHO05D004878 4.8e-87 325.1 181 88.4
Cfa019694 Carpinus fangiana HOM05D004152 ORTHO05D004878 6.2e-87 324.7 256 69.1
TAR629G1833 Trochodendron aralioides HOM05D004152 ORTHO05D004878 6.2e-87 324.7 264 68.2
Lj2C222T2 Lonicera japonica HOM05D004152 ORTHO05D004878 1.1e-86 323.9 253 68.8
FAN18G1702 Fragaria x ananassa HOM05D004152 ORTHO05D004878 1.4e-86 323.6 252 68.3
CSS0047405 Camellia sinensis var. sinensis HOM05D004152 ORTHO05D004878 2.4e-86 322.8 180 85.6
Potri.003G107800 Populus trichocarpa HOM05D004152 ORTHO05D004878 2.4e-86 322.8 259 66.8
Prupe.5G066300 Prunus persica HOM05D004152 ORTHO05D004878 2.4e-86 322.8 255 67.5
Sc10g0005540 Simmondsia chinensis HOM05D004152 ORTHO05D004878 2.4e-86 322.8 248 69.0
unitig_899.g15440 Utricularia gibba HOM05D004152 ORTHO05D004878 3.1e-86 322.4 224 74.1
Atru.chr9.1286 Acer truncatum HOM05D004152 ORTHO05D004878 4.0e-86 322.0 220 74.1
FAN08G2273 Fragaria x ananassa HOM05D004152 ORTHO05D004878 4.0e-86 322.0 258 68.2
FvH4_5g19250 Fragaria vesca HOM05D004152 ORTHO05D004878 9.0e-86 320.9 251 69.3
Ciclev10021871m.g Citrus clementina HOM05D004152 ORTHO05D004878 1.2e-85 320.5 254 68.5
EL10Ac5g12362 Beta vulgaris HOM05D004152 ORTHO05D004878 2.0e-85 319.7 245 71.0
Rhsim07G0110300 Rhododendron simsii HOM05D004152 ORTHO05D004878 3.4e-85 318.9 234 72.6
TWI81G0703 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 5.8e-85 318.2 248 67.7
Aqoxy7G00694 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 1.0e-84 317.4 257 65.0
THA.LOC104824129 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 1.3e-84 317.0 255 67.5
Nitab4.5_0000618g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.7e-84 316.6 236 70.3
AUR62007107 Chenopodium quinoa HOM05D004152 ORTHO05D004878 2.2e-84 316.2 241 70.1
FAN04G2897 Fragaria x ananassa HOM05D004152 ORTHO05D004878 2.9e-84 315.8 250 66.4
Aqoxy7G00850 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 3.8e-84 315.5 251 66.9
Nn6g33894 Nelumbo nucifera HOM05D004152 ORTHO05D004878 3.8e-84 315.5 254 66.9
Oeu040710.1 Olea europaea HOM05D004152 ORTHO05D004878 3.8e-84 315.5 260 66.9
AUR62019969 Chenopodium quinoa HOM05D004152 ORTHO05D004878 6.5e-84 314.7 245 68.6
HanXRQChr13g0417841 Helianthus annuus HOM05D004152 ORTHO05D004878 1.1e-83 313.9 254 67.3
Nitab4.5_0002881g0050 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.1e-83 313.9 249 67.5
Solyc06g060790.1 Solanum lycopersicum HOM05D004152 ORTHO05D004878 1.4e-83 313.5 243 69.1
DCAR_002274 Daucus carota HOM05D004152 ORTHO05D004878 1.9e-83 313.2 255 65.5
Sopen06g020930 Solanum pennellii HOM05D004152 ORTHO05D004878 4.2e-83 312.0 249 67.5
Thhalv10017142m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 9.3e-83 310.8 251 65.7
CARHR138160 Cardamine hirsuta HOM05D004152 ORTHO05D004878 1.2e-82 310.5 252 66.3
BolC4t22054H Brassica oleracea HOM05D004152 ORTHO05D004878 2.1e-82 309.7 224 71.4
HanXRQChr03g0088791 Helianthus annuus HOM05D004152 ORTHO05D004878 2.1e-82 309.7 253 67.6
PGSC0003DMG400024154 Solanum tuberosum HOM05D004152 ORTHO05D004878 2.1e-82 309.7 243 68.3
BraA05t19344Z Brassica rapa HOM05D004152 ORTHO05D004878 3.5e-82 308.9 220 72.3
CAN.G62.23 Capsicum annuum HOM05D004152 ORTHO05D004878 3.5e-82 308.9 186 81.2
AT2G43090 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 4.6e-82 308.5 253 66.0
AL4G41740 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 6.0e-82 308.1 251 65.7
A03p23950 Brassica napus HOM05D004152 ORTHO05D004878 6.0e-82 308.1 241 70.1
C03p28570 Brassica napus HOM05D004152 ORTHO05D004878 7.9e-82 307.8 241 70.1
Ah.12g054170 Amaranthus hybridus HOM05D004152 ORTHO05D004878 1.0e-81 307.4 245 67.8
BraA03t11610Z Brassica rapa HOM05D004152 ORTHO05D004878 1.8e-81 306.6 248 69.0
BcaC02g12415 Brassica carinata HOM05D004152 ORTHO05D004878 3.0e-81 305.8 245 66.5
BolC3t15222H Brassica oleracea HOM05D004152 ORTHO05D004878 5.1e-81 305.1 241 68.9
Carub.0004s2557 Capsella rubella HOM05D004152 ORTHO05D004878 5.1e-81 305.1 249 66.3
DCAR_008502 Daucus carota HOM05D004152 ORTHO05D004878 5.1e-81 305.1 239 66.9
PSO210G0624 Papaver somniferum HOM05D004152 ORTHO05D004878 5.1e-81 305.1 256 66.4
Sp4g25220 Schrenkiella parvula HOM05D004152 ORTHO05D004878 5.1e-81 305.1 251 64.5
ECA240G2077 Erigeron canadensis HOM05D004152 ORTHO05D004878 8.7e-81 304.3 223 70.0
PSO210G4930 Papaver somniferum HOM05D004152 ORTHO05D004878 5.7e-80 301.6 256 65.2
CARHR169410 Cardamine hirsuta HOM05D004152 ORTHO05D004878 7.4e-80 301.2 249 65.5
BcaNung03538 Brassica carinata HOM05D004152 ORTHO05D004878 1.3e-79 300.4 256 65.6
Actinidia10839 Actinidia chinensis HOM05D004152 ORTHO05D004878 1.8e-78 296.6 227 71.4
THA.LOC104803472 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 9.0e-78 294.3 244 66.8
Nitab4.5_0002881g0130 Nicotiana tabacum HOM05D004152 ORTHO05D004878 4.5e-77 292.0 240 65.0
Hund14573 Selenicereus undatus HOM05D004152 ORTHO05D004878 2.2e-76 289.7 199 72.9
BcaB01g01073 Brassica carinata HOM05D004152 ORTHO05D004878 2.9e-76 289.3 214 67.8
Peaxi162Scf01022g00023 Petunia axillaris HOM05D004152 ORTHO05D004878 1.4e-75 287.0 243 63.8
CARHR169370 Cardamine hirsuta HOM05D004152 ORTHO05D004878 4.2e-75 285.4 240 65.0
Aa31LG10G13480 Aethionema arabicum HOM05D004152 ORTHO05D004878 1.2e-74 283.9 227 65.6
SEGI_19785 Sequoiadendron giganteum HOM05D004152 ORTHO05D004878 3.6e-74 282.3 245 62.9
Aa31LG1G24900 Aethionema arabicum HOM05D004152 ORTHO05D004878 7.9e-74 281.2 235 65.1
CDE11G0751 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 3.9e-73 278.9 227 66.5
Os02g0655300 Oryza sativa ssp. japonica HOM05D004152 ORTHO05D004878 3.9e-73 278.9 185 74.6
AL5G40810 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 5.1e-73 278.5 230 64.3
AT3G58990 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 5.1e-73 278.5 243 63.0
Zm00001eb249330 Zea mays HOM05D004152 ORTHO05D004878 5.1e-73 278.5 184 73.9
ATR0693G400 Amborella trichopoda HOM05D004152 ORTHO05D004878 6.7e-73 278.1 256 62.1
Lj8A264G55 Lonicera japonica HOM05D004152 ORTHO05D004878 8.8e-73 277.7 170 81.2
Mapoly0001s0104 Marchantia polymorpha HOM05D004152 ORTHO05D004878 2.5e-72 276.2 189 71.4
Carub.0002s0595 Capsella rubella HOM05D004152 ORTHO05D004878 4.3e-72 275.4 243 63.0
CARHR138170 Cardamine hirsuta HOM05D004152 ORTHO05D004878 1.7e-71 273.5 256 60.9
Lsat_1_v5_gn_6_92521 Lactuca sativa HOM05D004152 ORTHO05D004878 2.2e-71 273.1 255 61.6
SMO274G0039 Selaginella moellendorffii HOM05D004152 ORTHO05D004878 2.2e-71 273.1 185 69.7
A05p03590 Brassica napus HOM05D004152 ORTHO05D004878 2.8e-71 272.7 260 61.2
BraA05t19345Z Brassica rapa HOM05D004152 ORTHO05D004878 3.7e-71 272.3 251 62.2
AagrBONN_evm.TU.Sc2ySwM_228.3330 Anthoceros agrestis HOM05D004152 ORTHO05D004878 1.1e-70 270.8 195 68.2
Carub.0005s2573 Capsella rubella HOM05D004152 ORTHO05D004878 1.4e-70 270.4 244 61.5
Pp3c1_29090 Physcomitrium patens HOM05D004152 ORTHO05D004878 2.4e-70 269.6 174 73.6
Sp4g25230 Schrenkiella parvula HOM05D004152 ORTHO05D004878 5.3e-70 268.5 256 61.3
BcaNung03539 Brassica carinata HOM05D004152 ORTHO05D004878 2.0e-69 266.5 255 60.8
Pp3c14_19120 Physcomitrium patens HOM05D004152 ORTHO05D004878 2.6e-69 266.2 174 71.8
BcaC02g12414 Brassica carinata HOM05D004152 ORTHO05D004878 3.4e-69 265.8 252 60.3
Aa31LG1G24910 Aethionema arabicum HOM05D004152 ORTHO05D004878 5.9e-69 265.0 252 57.9
Thhalv10017125m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 5.9e-69 265.0 263 60.5
AL4G41750 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 3.8e-68 262.3 256 60.2
C04p04150 Brassica napus HOM05D004152 ORTHO05D004878 5.0e-68 261.9 252 58.7
BolC4t22055H Brassica oleracea HOM05D004152 ORTHO05D004878 5.0e-68 261.9 252 58.7
AT2G43100 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 6.5e-68 261.5 254 59.1
Carub.0004s2558 Capsella rubella HOM05D004152 ORTHO05D004878 4.2e-67 258.8 257 60.3
BcaC01g05264 Brassica carinata HOM05D004152 ORTHO05D004878 7.9e-66 254.6 241 63.1
Dinv39162 Davidia involucrata HOM05D004152 ORTHO05D004878 1.3e-63 247.3 149 79.9
CDE11G0227 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 2.8e-63 246.1 150 79.3
Cre06.g252650 Chlamydomonas reinhardtii HOM05D004152 ORTHO05D004878 3.7e-63 245.7 176 67.6
Gohir.A03G168700 Gossypium hirsutum HOM05D004152 ORTHO05D004878 4.8e-63 245.4 258 57.4
Nitab4.5_0001410g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 2.7e-58 229.6 224 58.0
SHI09309 Sapria himalayana HOM05D004152 ORTHO05D004878 2.6e-56 223.0 133 79.7
Cc08_g12220 Coffea canephora HOM05D004152 ORTHO05D004878 8.2e-55 218.0 201 60.2
HPP92_020921 Vanilla planifolia HOM05D004152 ORTHO05D004878 1.6e-53 213.8 222 56.3
SalBow1G7183 Salvia bowleyana HOM05D004152 ORTHO05D004878 2.0e-53 213.4 203 59.6
Dinv21650 Davidia involucrata HOM05D004152 ORTHO05D004878 8.5e-52 208.0 121 82.6
Actinidia31515 Actinidia chinensis HOM05D004152 ORTHO05D004878 3.2e-51 206.1 187 64.7
Nitab4.5_0002372g0010 Nicotiana tabacum HOM05D004152 ORTHO05D004878 5.2e-49 198.7 119 82.4
EL10Ac5g12363 Beta vulgaris HOM05D004152 ORTHO05D004878 2.8e-47 193.0 223 50.2
Lj8A267T12 Lonicera japonica HOM05D004152 ORTHO05D004878 2.8e-47 193.0 251 50.2
Carub.0005s2576 Capsella rubella HOM05D004152 ORTHO05D004878 4.5e-45 185.7 163 60.7
TPR.G10893 Trifolium pratense HOM05D004152 ORTHO05D004878 7.7e-45 184.9 254 50.0
Sed0021243 Sechium edule HOM05D004152 ORTHO05D004878 1.3e-44 184.1 167 64.1
Oeu047732.1 Olea europaea HOM05D004152 ORTHO05D004878 1.7e-44 183.7 265 49.1
Lj8A266T18 Lonicera japonica HOM05D004152 ORTHO05D004878 5.0e-44 182.2 251 49.4
Rhsim05G0121600 Rhododendron simsii HOM05D004152 ORTHO05D004878 1.9e-43 180.3 164 62.2
Ah.12g054180 Amaranthus hybridus HOM05D004152 ORTHO05D004878 6.8e-41 171.8 191 50.3
BcaB05g25308 Brassica carinata HOM05D004152 ORTHO05D004878 7.5e-32 141.7 165 54.5
Lsat_1_v5_gn_7_1160 Lactuca sativa HOM05D004152 ORTHO05D004878 1.8e-30 137.1 75 85.3
SalBow1G0783 Salvia bowleyana HOM05D001430 ORTHO05D004878 5.9e-29 132.1 103 63.1
A05p03570 Brassica napus HOM05D000373 ORTHO05D007048 7.3e-27 125.2 76 78.9
C04p04140 Brassica napus HOM05D000373 ORTHO05D007048 3.6e-26 122.9 76 77.6
Lsat_1_v5_gn_5_55401 Lactuca sativa HOM05D004152 ORTHO05D004878 8.9e-25 118.2 78 73.1
ATR0693G063 Amborella trichopoda HOM05D004152 ORTHO05D004878 8.3e-23 111.7 125 52.0
AUR62007106 Chenopodium quinoa HOM05D004152 ORTHO05D004878 2.4e-22 110.2 112 53.6
Rhsim03G0103100 Rhododendron simsii HOM05D004152 ORTHO05D004878 1.6e-21 107.5 89 65.2
COL.COLO4_34273 Corchorus olitorius HOM05D004152 ORTHO05D004878 1.9e-14 84.0 198 36.9
GSVIVG01007403001 Vitis vinifera HOM05D004152 ORTHO05D004878 6.0e-13 79.0 208 36.5
Ah.14g083550 Amaranthus hybridus HOM05D004152 ORTHO05D004878 5.1e-12 75.9 50 76.0
Cfa024802 Carpinus fangiana HOM05D003112 ORTHO05D003660 4.7e-10 69.3 128 35.2
MCO01G562 Micromonas commoda HOM05D003112 ORTHO05D003660 2.3e-09 67.0 109 37.6
PRCOL_00005264 Prasinoderma coloniale HOM05D003112 ORTHO05D003660 3.1e-09 66.6 151 31.1
C03p28580 Brassica napus HOM05D004152 ORTHO05D004878 8.9e-09 65.1 83 41.0
CsaV3_5G004360 Cucumis sativus L. HOM05D004152 ORTHO05D004878 2.0e-08 63.9 54 59.3
BcaB01g00650 Brassica carinata HOM05D004152 ORTHO05D004878 5.8e-08 62.4 57 52.6
Ca_28701_v3 Cicer arietinum L. HOM05D004152 ORTHO05D003660 3.2e-06 56.6 96 39.6
A03p23960 Brassica napus HOM05D004152 ORTHO05D004878 9.2e-06 55.1 49 61.2


User provided reference genes

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