Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0008301 Lotus japonicus HOM05D004448 ORTHO05D005919 5.9e-280 966.8 475 100.0
Phvul.004G171600 Phaseolus vulgaris HOM05D004448 ORTHO05D005919 1.3e-173 613.6 476 67.9
Glyma.07G128700 Glycine max HOM05D004448 ORTHO05D005919 7.7e-155 551.2 470 63.4
Medtr7g090060 Medicago truncatula HOM05D004448 ORTHO05D005919 7.7e-155 551.2 376 74.5
VMungo0464G0625 Vigna mungo HOM05D005189 ORTHO05D006093 6.3e-149 531.6 429 65.5
Medtr6g092520 Medicago truncatula HOM05D004448 ORTHO05D005919 1.2e-139 500.7 366 68.9
Psat1g049640 Pisum sativum HOM05D004448 ORTHO05D005919 3.1e-135 486.1 377 66.0
QL02p063021 Quercus lobata HOM05D004448 ORTHO05D005919 4.0e-127 459.1 487 51.5
Prupe.7G212600 Prunus persica HOM05D004448 ORTHO05D005919 3.4e-118 429.5 460 52.2
FAN26G2794 Fragaria x ananassa HOM05D004448 ORTHO05D005919 5.8e-118 428.7 470 50.0
arahy.Tifrunner.gnm1.ann1.6Q96ZG Arachis hypogaea HOM05D004448 ORTHO05D005919 7.6e-118 428.3 378 61.4
arahy.Tifrunner.gnm1.ann1.LLR3FQ Arachis hypogaea HOM05D004448 ORTHO05D005919 1.4e-116 424.1 378 60.8
FvH4_1g07151 Fragaria vesca HOM05D004448 ORTHO05D005919 5.4e-116 422.2 464 50.0
RcHm_v2.0_Chr2g0093041 Rosa chinensis HOM05D004448 ORTHO05D005919 5.4e-116 422.2 466 50.9
FAN26G0987 Fragaria x ananassa HOM05D004448 ORTHO05D005919 4.6e-115 419.1 470 49.1
Haze_25890 Corylus avellana HOM05D004448 ORTHO05D005919 9.6e-113 411.4 517 47.0
Ca_08398_v3 Cicer arietinum L. HOM05D004448 ORTHO05D005919 2.8e-112 409.8 255 80.4
Cfa003108 Carpinus fangiana HOM05D004448 ORTHO05D005919 5.2e-111 405.6 508 45.7
TWI32G1061 Tripterygium wilfordii HOM05D004448 ORTHO05D005919 5.2e-111 405.6 480 48.1
CiPaw.03G218000 Carya illinoinensis HOM05D004448 ORTHO05D005919 1.2e-110 404.4 465 48.0
ClCG03G015750 Citrullus lanatus HOM05D004448 ORTHO05D005919 2.2e-109 400.2 468 48.7
CANSAT56G0950 Cannabis sativa HOM05D004448 ORTHO05D005919 7.1e-108 395.2 380 55.3
GSVIVG01015227001 Vitis vinifera HOM05D004448 ORTHO05D005919 2.1e-107 393.7 519 44.9
Duzib168G0645 Durio zibethinus HOM05D004448 ORTHO05D005919 1.3e-106 391.0 481 48.6
CSS0023607 Camellia sinensis var. sinensis HOM05D004448 ORTHO05D005919 1.7e-106 390.6 474 46.8
Actinidia25266 Actinidia chinensis HOM05D004448 ORTHO05D005919 3.0e-106 389.8 469 48.0
Dinv42301 Davidia involucrata HOM05D004448 ORTHO05D005919 8.7e-106 388.3 500 46.2
Eucgr.C00913 Eucalyptus grandis HOM05D004448 ORTHO05D005919 3.3e-105 386.3 503 45.3
CsaV3_1G040260 Cucumis sativus L. HOM05D004448 ORTHO05D005919 3.1e-103 379.8 474 46.4
Manes.03G032000 Manihot esculenta HOM05D004448 ORTHO05D005919 1.2e-102 377.9 473 45.2
FAN23G3053 Fragaria x ananassa HOM05D004448 ORTHO05D005919 5.8e-102 375.6 459 45.3
FAN19G1271 Fragaria x ananassa HOM05D004448 ORTHO05D005919 7.6e-102 375.2 479 44.1
COL.COLO4_18221 Corchorus olitorius HOM05D004448 ORTHO05D005919 3.8e-101 372.9 480 45.4
CsaV3_UNG066510 Cucumis sativus L. HOM05D004448 ORTHO05D005919 6.4e-101 372.1 468 45.9
MELO3C015453.2 Cucumis melo HOM05D004448 ORTHO05D005919 3.2e-100 369.8 476 46.0
Thecc.09G092200 Theobroma cacao HOM05D004448 ORTHO05D005919 9.3e-100 368.2 482 45.9
PGR142G4073 Punica granatum HOM05D004448 ORTHO05D005919 1.1e-97 361.3 478 44.6
Nn8g38906 Nelumbo nucifera HOM05D004448 ORTHO05D005919 9.6e-97 358.2 512 44.7
Cc06_g11170 Coffea canephora HOM05D004448 ORTHO05D005919 1.6e-96 357.5 477 45.1
Dinv36750 Davidia involucrata HOM05D004448 ORTHO05D005919 2.1e-96 357.1 485 44.9
Potri.006G150000 Populus trichocarpa HOM05D004448 ORTHO05D005919 8.1e-96 355.1 479 45.3
Sabra06G0118700 Salix brachista HOM05D004448 ORTHO05D005919 8.1e-96 355.1 470 44.3
Ah.14g085380 Amaranthus hybridus HOM05D004448 ORTHO05D005919 2.0e-94 350.5 463 42.3
Nitab4.5_0000938g0020 Nicotiana tabacum HOM05D004448 ORTHO05D005919 7.6e-94 348.6 473 45.0
RcHm_v2.0_Chr2g0093031 Rosa chinensis HOM05D004448 ORTHO05D005919 1.7e-93 347.4 470 43.6
EL10Ac8g19309 Beta vulgaris HOM05D004448 ORTHO05D005919 4.9e-93 345.9 466 41.6
AUR62031324 Chenopodium quinoa HOM05D004448 ORTHO05D005919 6.4e-93 345.5 462 43.1
AUR62027409 Chenopodium quinoa HOM05D004448 ORTHO05D005919 3.2e-92 343.2 464 42.5
RhsimUnG0189000 Rhododendron simsii HOM05D004448 ORTHO05D005919 5.5e-92 342.4 451 44.8
Rhsim05G0022900 Rhododendron simsii HOM05D004448 ORTHO05D005919 1.6e-91 340.9 508 41.5
Sopen07g011050 Solanum pennellii HOM05D004448 ORTHO05D005919 1.8e-90 337.4 476 43.3
Oeu024590.1 Olea europaea HOM05D004448 ORTHO05D005919 3.0e-90 336.7 374 50.5
Sc18g0001910 Simmondsia chinensis HOM05D004448 ORTHO05D005919 5.1e-90 335.9 388 46.9
Ciclev10010615m.g Citrus clementina HOM05D004448 ORTHO05D005919 6.7e-90 335.5 490 41.8
PGSC0003DMG400033614 Solanum tuberosum HOM05D004448 ORTHO05D005919 6.7e-90 335.5 471 43.9
Hma1.2p1_0663F.1_g198910 Hydrangea macrophylla HOM05D004448 ORTHO05D005919 3.3e-89 333.2 465 43.7
Gohir.D08G265800 Gossypium hirsutum HOM05D004448 ORTHO05D005919 7.4e-89 332.0 472 43.2
PSO210G3334 Papaver somniferum HOM05D004448 ORTHO05D005919 9.6e-89 331.6 507 41.4
Gohir.A08G245000 Gossypium hirsutum HOM05D004448 ORTHO05D005919 1.3e-88 331.3 473 43.3
Solyc07g021550.3 Solanum lycopersicum HOM05D004448 ORTHO05D005919 2.1e-88 330.5 474 42.6
Nitab4.5_0000713g0030 Nicotiana tabacum HOM05D004448 ORTHO05D005919 3.7e-88 329.7 504 41.5
vmacro17218 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 3.1e-87 326.6 468 43.8
vmacro22686 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 3.1e-87 326.6 468 43.8
Gohir.D08G266000 Gossypium hirsutum HOM05D004448 ORTHO05D005919 3.4e-86 323.2 383 47.0
Peaxi162Scf00175g00047 Petunia axillaris HOM05D004448 ORTHO05D005919 5.8e-86 322.4 472 43.0
TPR.G40396 Trifolium pratense HOM05D004448 ORTHO05D005919 1.9e-84 317.4 244 67.6
PSO210G5509 Papaver somniferum HOM05D004448 ORTHO05D005919 2.1e-83 313.9 490 40.2
Hund06702 Selenicereus undatus HOM05D004448 ORTHO05D005919 3.3e-81 306.6 374 45.7
DCAR_024685 Daucus carota HOM05D004448 ORTHO05D005919 5.7e-81 305.8 439 41.5
MBI08_g34934_MAGBIO Magnolia biondii HOM05D004448 ORTHO05D005919 2.8e-80 303.5 385 46.8
Atru.chr7.1561 Acer truncatum HOM05D004448 ORTHO05D005919 3.7e-80 303.1 502 37.8
Cpa.g.sc7.238 Carica papaya HOM05D004448 ORTHO05D005919 1.1e-79 301.6 317 50.8
Nitab4.5_0004087g0010 Nicotiana tabacum HOM05D004448 ORTHO05D005919 5.9e-78 295.8 378 46.0
Duzib150G0429 Durio zibethinus HOM05D004448 ORTHO05D005919 1.0e-77 295.0 517 38.7
Ciclev10008074m.g Citrus clementina HOM05D004448 ORTHO05D005919 2.2e-77 293.9 503 38.0
Lsat_1_v5_gn_5_145680 Lactuca sativa HOM05D004448 ORTHO05D005919 2.9e-77 293.5 378 46.3
Aa31LG3G12720 Aethionema arabicum HOM05D004448 ORTHO05D005919 8.5e-77 292.0 492 38.8
Gohir.A08G244900 Gossypium hirsutum HOM05D004448 ORTHO05D005919 4.6e-75 286.2 456 41.7
BcaB08g36059 Brassica carinata HOM05D004448 ORTHO05D005919 1.3e-74 284.6 468 36.8
BraA10t43502Z Brassica rapa HOM05D004448 ORTHO05D005919 1.3e-74 284.6 485 37.3
AT5G56780 Arabidopsis thaliana HOM05D004448 ORTHO05D005919 1.8e-74 284.3 468 38.5
A10p14110 Brassica napus HOM05D004448 ORTHO05D005919 2.3e-74 283.9 485 37.5
CSS0050052 Camellia sinensis var. sinensis HOM05D004448 ORTHO05D005919 1.9e-73 280.8 526 35.9
Carub.0008s1726 Capsella rubella HOM05D004448 ORTHO05D005919 1.9e-73 280.8 480 37.9
Sp6g18520 Schrenkiella parvula HOM05D004448 ORTHO05D005919 1.9e-73 280.8 472 36.7
BcaC04g20054 Brassica carinata HOM05D004448 ORTHO05D005919 4.3e-73 279.6 472 36.9
CDE09G0006 Ceratophyllum demersum HOM05D004448 ORTHO05D005919 1.7e-72 277.7 461 39.0
BolC9t57684H Brassica oleracea HOM05D004448 ORTHO05D005919 2.2e-72 277.3 472 36.9
THA.LOC104813490 Tarenaya hassleriana HOM05D004448 ORTHO05D005919 1.1e-71 275.0 478 36.6
C09p48340 Brassica napus HOM05D004448 ORTHO05D005919 1.8e-71 274.2 472 36.7
BcaC02g12506 Brassica carinata HOM05D004448 ORTHO05D005919 2.4e-71 273.9 465 37.0
SalBow6G4094 Salvia bowleyana HOM05D004448 ORTHO05D005919 2.4e-71 273.9 390 43.3
Thhalv10015325m.g Eutrema salsugineum HOM05D004448 ORTHO05D005919 4.1e-71 273.1 474 38.0
HanXRQChr12g0354731 Helianthus annuus HOM05D004448 ORTHO05D005919 9.1e-71 271.9 375 42.7
C04p01820 Brassica napus HOM05D004448 ORTHO05D005919 1.5e-70 271.2 469 37.7
BraA05t19157Z Brassica rapa HOM05D004448 ORTHO05D005919 1.0e-69 268.5 473 36.2
Rhsim03G0233500 Rhododendron simsii HOM05D004448 ORTHO05D005919 2.2e-69 267.3 461 38.2
BcaC02g12705 Brassica carinata HOM05D004448 ORTHO05D005919 1.1e-68 265.0 458 36.9
Aqoxy5G03492 Aquilegia oxysepala HOM05D004448 ORTHO05D005919 1.4e-68 264.6 427 39.3
CARHR270530 Cardamine hirsuta HOM05D004448 ORTHO05D005919 1.9e-68 264.2 448 36.6
AL8G32620 Arabidopsis lyrata HOM05D004448 ORTHO05D005919 3.6e-67 260.0 518 34.2
Aa31LG2G21230 Aethionema arabicum HOM05D004448 ORTHO05D005919 1.8e-66 257.7 465 34.8
unitig_0.g218 Utricularia gibba HOM05D004448 ORTHO05D005919 6.7e-66 255.8 389 42.4
ECA234G2909 Erigeron canadensis HOM05D004448 ORTHO05D005919 4.8e-64 249.6 291 47.8
Migut.J00591 Erythranthe guttata HOM05D004448 ORTHO05D005919 2.5e-60 237.3 310 45.5
FvH4_1g07150 Fragaria vesca HOM05D004448 ORTHO05D005919 3.2e-60 236.9 351 39.6
Mapoly0070s0093 Marchantia polymorpha HOM05D004448 ORTHO05D005919 9.4e-60 235.3 419 36.0
A05p01610 Brassica napus HOM05D004448 ORTHO05D005919 2.6e-57 227.3 305 43.3
Sed0012121 Sechium edule HOM05D004448 ORTHO05D005919 1.4e-55 221.5 330 40.0
vmacro06280 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 9.1e-55 218.8 314 43.9
HPP92_006937 Vanilla planifolia HOM05D004448 ORTHO05D005919 2.2e-53 214.2 286 44.4
Zm00001eb325970 Zea mays HOM05D004448 ORTHO05D005919 3.2e-52 210.3 379 38.0
TPR.G35500 Trifolium pratense HOM05D004448 ORTHO05D005919 1.6e-51 208.0 165 63.6
CANSAT56G3488 Cannabis sativa HOM05D004448 ORTHO05D005919 4.0e-50 203.4 232 47.8
Os07g0586700 Oryza sativa ssp. japonica HOM05D004448 ORTHO05D005919 8.8e-50 202.2 499 31.7
ATR0705G152 Amborella trichopoda HOM05D004448 ORTHO05D005919 1.5e-49 201.4 318 39.9
MD02G1076000 Malus domestica HOM05D004448 ORTHO05D005919 3.1e-47 193.7 146 65.8
Rhsim03G0233900 Rhododendron simsii HOM05D004448 ORTHO05D005919 1.0e-45 188.7 377 35.3
Lalb_Chr24g0393831 Lupinus albus HOM05D004448 ORTHO05D005919 1.9e-44 184.5 146 63.0
AagrBONN_evm.TU.Sc2ySwM_117.4075 Anthoceros agrestis HOM05D004448 ORTHO05D005919 2.5e-44 184.1 363 33.6
Gohir.A08G245100 Gossypium hirsutum HOM05D004448 ORTHO05D005919 1.4e-42 178.3 367 36.0
CBR_g29538 Chara braunii HOM05D004448 ORTHO05D005919 2.8e-40 170.6 500 30.0
TPR.G35590 Trifolium pratense HOM05D004448 ORTHO05D005919 2.8e-40 170.6 106 79.2
Gorai.N024000 Gossypium raimondii HOM05D004448 ORTHO05D005919 8.3e-40 169.1 387 34.1
Pp3c3_34250 Physcomitrium patens HOM05D004448 ORTHO05D005919 1.8e-39 167.9 324 35.5
CARHR270520 Cardamine hirsuta HOM05D004448 ORTHO05D005919 5.4e-39 166.4 279 38.7
RhsimUnG0145000 Rhododendron simsii HOM05D004448 ORTHO05D005919 7.0e-39 166.0 234 41.5
SMO139G0129 Selaginella moellendorffii HOM05D006068 ORTHO05D007579 2.7e-38 164.1 330 35.8
Pp3c27_3080 Physcomitrium patens HOM05D004448 ORTHO05D005919 1.7e-37 161.4 549 27.5
Pp3c4_9790 Physcomitrium patens HOM05D004448 ORTHO05D005919 4.2e-36 156.8 325 34.8
MD02G1075500 Malus domestica HOM05D004448 ORTHO05D005919 1.1e-31 142.1 234 38.5
Atru.chr7.1554 Acer truncatum HOM05D004448 ORTHO05D005919 9.2e-31 139.0 251 34.3
SGA_v2.0_scaffold62G21589 Striga asiatica HOM05D004448 ORTHO05D005919 1.6e-30 138.3 148 52.7
Glyma.01G003300 Glycine max HOM05D004448 ORTHO05D005919 1.0e-29 135.6 98 71.4
RhsimUnG0144800 Rhododendron simsii HOM05D004448 ORTHO05D005919 1.7e-29 134.8 301 33.9
Rhsim05G0023200 Rhododendron simsii HOM05D004448 ORTHO05D005919 2.3e-29 134.4 295 34.2
AT5G56770 Arabidopsis thaliana HOM05D004448 ORTHO05D005919 1.9e-28 131.3 218 38.1
SMO157G0009 Selaginella moellendorffii HOM05D006068 ORTHO05D007579 8.0e-27 125.9 296 32.8
AL8G32610 Arabidopsis lyrata HOM05D004448 ORTHO05D005919 1.0e-26 125.6 168 41.7
Medtr6g092500 Medicago truncatula HOM05D004448 ORTHO05D005919 3.0e-26 124.0 107 58.9
Gohir.D08G265900 Gossypium hirsutum HOM05D004448 ORTHO05D005919 1.9e-23 114.8 387 28.9
Atru.chr7.1555 Acer truncatum HOM05D004448 ORTHO05D005919 1.3e-21 108.6 100 55.0
CARHR233700 Cardamine hirsuta HOM05D004448 ORTHO05D015948 5.0e-21 106.7 443 26.2
Pp3c16_1200 Physcomitrium patens HOM05D004448 ORTHO05D005919 2.5e-20 104.4 392 27.6
SalBow1G6253 Salvia bowleyana HOM05D004448 ORTHO05D005919 5.6e-20 103.2 123 48.8
Pp3c15_21310 Physcomitrium patens HOM05D004448 ORTHO05D005919 4.7e-19 100.1 116 44.8
Carub.0008s1725 Capsella rubella HOM05D004448 ORTHO05D005919 1.1e-18 99.0 187 36.4
Hma1.2p1_0024F.1_g016070 Hydrangea macrophylla HOM05D004448 ORTHO05D005919 7.5e-17 92.8 104 49.0
Medtr6g092480 Medicago truncatula HOM05D012533 ORTHO05D264910 8.3e-16 89.4 106 43.4
AL7G26800 Arabidopsis lyrata HOM05D004448 ORTHO05D015948 5.4e-15 86.7 383 24.8
RhsimUnG0032400 Rhododendron simsii HOM05D004448 ORTHO05D005919 1.2e-14 85.5 238 29.8
Carub.0007s1478 Capsella rubella HOM05D004448 ORTHO05D015948 2.3e-13 81.3 387 23.3
Pp3c5_7060 Physcomitrium patens HOM05D004448 ORTHO05D005919 1.9e-12 78.2 371 22.9
AT4G26170 Arabidopsis thaliana HOM05D004448 ORTHO05D015948 3.3e-12 77.4 145 35.2
Sp7g24190 Schrenkiella parvula HOM05D004448 ORTHO05D015948 5.6e-12 76.6 145 33.1
CBR_g20264 Chara braunii HOM05D000505 ORTHO05D000301 9.5e-12 75.9 128 35.9
Aa31LG3G540 Aethionema arabicum HOM05D001256 ORTHO05D001141 1.2e-11 75.5 131 36.6
Thhalv10025245m.g Eutrema salsugineum HOM05D004448 ORTHO05D015948 4.7e-11 73.6 145 34.5
FvH4_1g07231 Fragaria vesca HOM05D004448 ORTHO05D005919 8.1e-11 72.8 125 35.2
BraA01t01701Z Brassica rapa HOM05D004448 ORTHO05D015948 3.1e-10 70.9 253 24.5


User provided reference genes

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