Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0000099 Lotus japonicus HOM05D005334 ORTHO05D006560 1.7e-91 339.3 172 100.0
Lj3g0001207 Lotus japonicus HOM05D005334 ORTHO05D006560 3.1e-85 318.5 167 97.0
Glyma.13G008300 Glycine max HOM05D005334 ORTHO05D006560 1.2e-81 306.6 167 91.6
Lalb_Chr12g0210501 Lupinus albus HOM05D005334 ORTHO05D006560 1.9e-79 299.3 167 89.2
Medtr8g007340 Medicago truncatula HOM05D005334 ORTHO05D006560 7.3e-79 297.4 172 86.0
Ca_14799_v3 Cicer arietinum L. HOM05D005334 ORTHO05D006560 1.2e-78 296.6 172 84.9
Psat4g223080 Pisum sativum HOM05D005334 ORTHO05D006560 3.6e-78 295.0 172 84.9
Phvul.010G046100 Phaseolus vulgaris HOM05D005334 ORTHO05D006560 4.7e-78 294.7 169 86.4
arahy.Tifrunner.gnm1.ann1.DY9T0P Arachis hypogaea HOM05D005334 ORTHO05D006560 6.2e-78 294.3 167 89.2
arahy.Tifrunner.gnm1.ann1.D5QNLH Arachis hypogaea HOM05D005334 ORTHO05D006560 1.8e-77 292.7 167 88.6
Phvul.010G045900 Phaseolus vulgaris HOM05D005334 ORTHO05D006560 2.3e-77 292.4 169 85.8
TPR.G5292 Trifolium pratense HOM05D005334 ORTHO05D006560 2.3e-77 292.4 169 86.4
VMungo0331G1245 Vigna mungo HOM05D005334 ORTHO05D006560 1.7e-75 286.2 169 82.8
Gorai.008G084700 Gossypium raimondii HOM05D005334 ORTHO05D006560 1.1e-71 273.5 167 82.0
Gohir.D12G076300 Gossypium hirsutum HOM05D005334 ORTHO05D006560 1.5e-71 273.1 167 81.4
COL.COLO4_25710 Corchorus olitorius HOM05D005334 ORTHO05D006560 3.3e-71 271.9 167 80.2
Cfa006855 Carpinus fangiana HOM05D005334 ORTHO05D006560 5.6e-71 271.2 167 80.8
Thecc.10G018300 Theobroma cacao HOM05D005334 ORTHO05D006560 5.6e-71 271.2 167 80.8
CANSAT01G0836 Cannabis sativa HOM05D005334 ORTHO05D006560 2.1e-70 269.2 172 77.9
Ciclev10008278m.g Citrus clementina HOM05D005334 ORTHO05D006560 2.1e-70 269.2 167 80.2
GSVIVG01003946001 Vitis vinifera HOM05D005334 ORTHO05D006560 3.6e-70 268.5 167 79.6
Eucgr.A00094 Eucalyptus grandis HOM05D005334 ORTHO05D006560 6.2e-70 267.7 167 78.4
Sabra10G0146100 Salix brachista HOM05D005334 ORTHO05D006560 6.2e-70 267.7 167 77.8
Duzib128G0185 Durio zibethinus HOM05D005334 ORTHO05D006560 1.8e-69 266.2 161 82.0
CiPaw.07G045200 Carya illinoinensis HOM05D005334 ORTHO05D006560 3.1e-69 265.4 168 79.8
Ciclev10008715m.g Citrus clementina HOM05D005334 ORTHO05D006560 4.0e-69 265.0 167 79.6
TWI34G1275 Tripterygium wilfordii HOM05D005334 ORTHO05D006560 6.8e-69 264.2 168 78.6
Haze_03908 Corylus avellana HOM05D005334 ORTHO05D006560 1.5e-68 263.1 160 81.9
Prupe.1G076500 Prunus persica HOM05D005334 ORTHO05D006560 1.5e-68 263.1 167 77.8
QL06p036434 Quercus lobata HOM05D005334 ORTHO05D006560 1.5e-68 263.1 166 79.5
ClCG01G018260 Citrullus lanatus HOM05D005334 ORTHO05D006560 2.6e-68 262.3 172 75.6
CsaV3_6G044840 Cucumis sativus L. HOM05D005334 ORTHO05D006560 5.8e-68 261.2 172 75.6
Gohir.A12G078265 Gossypium hirsutum HOM05D005334 ORTHO05D006560 9.9e-68 260.4 167 79.6
Hma1.2p1_0964F.1_g242010 Hydrangea macrophylla HOM05D005334 ORTHO05D006560 9.9e-68 260.4 167 77.8
Manes.10G013400 Manihot esculenta HOM05D005334 ORTHO05D006560 1.7e-67 259.6 167 77.2
Sed0026061 Sechium edule HOM05D005334 ORTHO05D006560 2.2e-67 259.2 173 75.7
FAN26G1496 Fragaria x ananassa HOM05D005334 ORTHO05D006560 2.9e-67 258.8 167 78.4
Potri.010G189500 Populus trichocarpa HOM05D005334 ORTHO05D006560 2.9e-67 258.8 167 75.4
MD01G1042400 Malus domestica HOM05D005334 ORTHO05D006560 6.4e-67 257.7 172 75.6
Rhsim04G0113300 Rhododendron simsii HOM05D005334 ORTHO05D006560 1.9e-66 256.1 167 76.0
CAN.G1813.2 Capsicum annuum HOM05D005334 ORTHO05D006560 2.4e-66 255.8 169 73.4
RcHm_v2.0_Chr6g0270301 Rosa chinensis HOM05D005334 ORTHO05D006560 2.4e-66 255.8 167 77.2
RcHm_v2.0_Chr6g0270401 Rosa chinensis HOM05D005334 ORTHO05D006560 3.2e-66 255.4 167 76.6
MELO3C007703.2 Cucumis melo HOM05D005334 ORTHO05D006560 5.4e-66 254.6 176 73.3
CiPaw.07G044700 Carya illinoinensis HOM05D005334 ORTHO05D006560 7.1e-66 254.2 160 79.4
Peaxi162Scf00085g00115 Petunia axillaris HOM05D005334 ORTHO05D006560 7.1e-66 254.2 169 73.4
FvH4_1g19290 Fragaria vesca HOM05D005334 ORTHO05D006560 9.2e-66 253.8 167 77.2
FvH4_7g07230 Fragaria vesca HOM05D005334 ORTHO05D006560 9.2e-66 253.8 167 76.0
Solyc11g010950.2 Solanum lycopersicum HOM05D005334 ORTHO05D006560 1.2e-65 253.4 169 72.8
Lsat_1_v5_gn_6_15620 Lactuca sativa HOM05D005334 ORTHO05D006560 1.6e-65 253.1 165 75.8
ECA233G4415 Erigeron canadensis HOM05D005334 ORTHO05D006560 2.7e-65 252.3 173 73.4
FAN19G2596 Fragaria x ananassa HOM05D005334 ORTHO05D006560 3.5e-65 251.9 166 77.1
Sopen11g005690 Solanum pennellii HOM05D005334 ORTHO05D006560 4.6e-65 251.5 169 72.8
PGSC0003DMG400016186 Solanum tuberosum HOM05D005334 ORTHO05D006560 6.0e-65 251.1 169 72.2
SGA_v2.0_scaffold45G17221 Striga asiatica HOM05D005334 ORTHO05D006560 7.8e-65 250.8 172 71.5
Actinidia05483 Actinidia chinensis HOM05D005334 ORTHO05D006560 1.3e-64 250.0 167 74.3
Nitab4.5_0000402g0140 Nicotiana tabacum HOM05D005334 ORTHO05D006560 1.3e-64 250.0 169 71.6
PSO832G1169 Papaver somniferum HOM05D005334 ORTHO05D006560 1.7e-64 249.6 167 76.0
CiPaw.07G045000 Carya illinoinensis HOM05D005334 ORTHO05D006560 2.3e-64 249.2 168 77.4
PSO013G0112 Papaver somniferum HOM05D005334 ORTHO05D006560 3.0e-64 248.8 167 76.0
vmacro09003 Vaccinium macrocarpon HOM05D005334 ORTHO05D006560 3.0e-64 248.8 169 73.4
FAN23G0357 Fragaria x ananassa HOM05D005334 ORTHO05D006560 3.9e-64 248.4 167 76.6
FAN23G0783 Fragaria x ananassa HOM05D005334 ORTHO05D006560 3.9e-64 248.4 167 76.6
THA.LOC104816551 Tarenaya hassleriana HOM05D005334 ORTHO05D006560 1.1e-63 246.9 167 73.1
Nn5g29815 Nelumbo nucifera HOM05D005334 ORTHO05D006560 1.9e-63 246.1 167 74.3
Carub.0003s1053 Capsella rubella HOM05D005334 ORTHO05D006560 2.5e-63 245.7 167 73.1
Thhalv10021017m.g Eutrema salsugineum HOM05D005334 ORTHO05D006560 3.3e-63 245.4 167 73.1
PSO700G0130 Papaver somniferum HOM05D005334 ORTHO05D006560 7.3e-63 244.2 167 73.7
BcaC05g29390 Brassica carinata HOM05D005334 ORTHO05D006560 1.6e-62 243.0 167 72.5
PSO761G0425 Papaver somniferum HOM05D005334 ORTHO05D006560 1.6e-62 243.0 167 74.3
PGR031G2068 Punica granatum HOM05D005334 ORTHO05D006560 1.6e-62 243.0 169 72.8
Sc03g0000510 Simmondsia chinensis HOM05D005334 ORTHO05D006560 1.6e-62 243.0 167 70.7
A05p38080 Brassica napus HOM05D005334 ORTHO05D006560 6.2e-62 241.1 166 72.3
C05p56870 Brassica napus HOM05D005334 ORTHO05D006560 6.2e-62 241.1 166 72.3
BolC5t34351H Brassica oleracea HOM05D005334 ORTHO05D006560 6.2e-62 241.1 166 72.3
CARHR085780 Cardamine hirsuta HOM05D005334 ORTHO05D006560 6.2e-62 241.1 167 71.3
Aa31LG3G4530 Aethionema arabicum HOM05D005334 ORTHO05D006560 1.4e-61 240.0 167 73.1
Atru.chr12.1050 Acer truncatum HOM05D005334 ORTHO05D006560 1.8e-61 239.6 193 67.9
Sp3g09500 Schrenkiella parvula HOM05D005334 ORTHO05D006560 5.2e-61 238.0 167 70.7
BraA05t22600Z Brassica rapa HOM05D005334 ORTHO05D006560 6.9e-61 237.7 166 71.1
BcaB06g25638 Brassica carinata HOM05D005334 ORTHO05D006560 9.0e-61 237.3 172 70.3
AT3G11220 Arabidopsis thaliana HOM05D005334 ORTHO05D006560 1.2e-60 236.9 167 71.9
HanXRQChr08g0226671 Helianthus annuus HOM05D005334 ORTHO05D006560 3.4e-60 235.3 172 68.6
SalBow5G3116 Salvia bowleyana HOM05D005334 ORTHO05D006560 2.2e-59 232.6 162 71.0
SalBow5G4670 Salvia bowleyana HOM05D005334 ORTHO05D006560 2.2e-59 232.6 162 71.0
Cc07_g13790 Coffea canephora HOM05D005334 ORTHO05D006560 6.4e-59 231.1 170 68.2
MSTRG.3723 Avicennia marina HOM05D005334 ORTHO05D006560 8.4e-59 230.7 167 68.9
CiPaw.07G049700 Carya illinoinensis HOM05D005334 ORTHO05D006560 1.1e-58 230.3 168 71.4
TAR625G0036 Trochodendron aralioides HOM05D005334 ORTHO05D006560 1.1e-58 230.3 166 71.1
Migut.K00814 Erythranthe guttata HOM05D005334 ORTHO05D006560 1.6e-57 226.5 150 76.0
AL3G22740 Arabidopsis lyrata HOM05D005334 ORTHO05D006560 6.0e-57 224.6 174 67.8
Cpa.g.sc19.179 Carica papaya HOM05D005334 ORTHO05D006560 6.0e-57 224.6 140 82.1
Aqoxy6G01573 Aquilegia oxysepala HOM05D005334 ORTHO05D006560 1.0e-56 223.8 167 68.9
AUR62003692 Chenopodium quinoa HOM05D005334 ORTHO05D006560 1.7e-56 223.0 165 67.9
Os06g0639600 Oryza sativa ssp. japonica HOM05D005334 ORTHO05D006560 3.9e-56 221.9 167 66.5
AUR62018003 Chenopodium quinoa HOM05D005334 ORTHO05D006560 6.6e-56 221.1 197 58.9
MBI10_g34777_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 4.3e-55 218.4 198 59.1
FAN03G2380 Fragaria x ananassa HOM05D005334 ORTHO05D006560 2.8e-54 215.7 142 78.2
Zm00001eb387250 Zea mays HOM05D005334 ORTHO05D006560 2.8e-54 215.7 167 66.5
unitig_0.g2648 Utricularia gibba HOM05D005334 ORTHO05D006560 9.0e-53 210.7 178 62.4
CSS0002721 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 3.8e-51 205.3 129 76.7
Lj2C525G9 Lonicera japonica HOM05D005334 ORTHO05D006560 3.8e-51 205.3 132 78.0
SEGI_17743 Sequoiadendron giganteum HOM05D005334 ORTHO05D006560 6.4e-51 204.5 170 59.4
ATR1153G009 Amborella trichopoda HOM05D005334 ORTHO05D006560 3.2e-50 202.2 168 61.9
CSS0046374 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 5.4e-50 201.4 122 82.8
SHI03443 Sapria himalayana HOM05D005334 ORTHO05D006560 9.3e-50 200.7 162 61.7
CSS0016906 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 1.3e-48 196.8 122 81.1
Glyma.03G108600 Glycine max HOM05D005334 ORTHO05D006560 4.3e-47 191.8 108 86.1
CDE04G2384 Ceratophyllum demersum HOM05D005334 ORTHO05D006560 8.1e-46 187.6 161 59.0
MD01G1042700 Malus domestica HOM05D005334 ORTHO05D006560 4.2e-42 175.3 165 58.8
RcHm_v2.0_Chr2g0110581 Rosa chinensis HOM05D005334 ORTHO05D006560 1.1e-39 167.2 112 75.0
CSS0017464 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 1.9e-39 166.4 122 73.0
Ah.02g123390 Amaranthus hybridus HOM05D005334 ORTHO05D006560 9.0e-37 157.5 167 52.1
Pp3c9_23940 Physcomitrium patens HOM05D005334 ORTHO05D006560 4.9e-35 151.8 166 47.0
Mapoly0006s0234 Marchantia polymorpha HOM05D005334 ORTHO05D006560 2.5e-34 149.4 171 45.6
ATR0022G031 Amborella trichopoda HOM05D005334 ORTHO05D006560 5.5e-34 148.3 142 58.5
Hund14075 Selenicereus undatus HOM05D005334 ORTHO05D006560 1.6e-33 146.7 167 49.1
AagrBONN_evm.TU.Sc2ySwM_117.1770 Anthoceros agrestis HOM05D005334 ORTHO05D006560 6.3e-30 134.8 144 51.4
Prupe.6G206700 Prunus persica HOM05D005334 ORTHO05D006560 2.4e-29 132.9 167 47.9
DCAR_003438 Daucus carota HOM05D005334 ORTHO05D006560 2.9e-27 125.9 84 73.8
Thecc.09G278800 Theobroma cacao HOM05D005334 ORTHO05D006560 6.5e-27 124.8 80 73.8
Dinv36960 Davidia involucrata HOM05D005334 ORTHO05D006560 9.3e-26 120.9 80 70.0
CSS0026696 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 2.7e-25 119.4 72 80.6
Dinv27014 Davidia involucrata HOM05D005334 ORTHO05D006560 7.9e-25 117.9 93 62.4
MBI03_g45376_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 4.3e-23 112.1 81 69.1
HPP92_008021 Vanilla planifolia HOM05D005334 ORTHO05D006560 3.7e-22 109.0 72 76.4
SMO146G0066 Selaginella moellendorffii HOM05D005334 ORTHO05D006560 4.2e-18 95.5 108 45.4
MBI03_g46739_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 9.4e-18 94.4 77 59.7
CBR_g30786 Chara braunii HOM05D000019 ORTHO05D000002 2.2e-14 83.2 119 35.3


User provided reference genes

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