Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2P1230T111 Lonicera japonica HOM05D001987 ORTHO05D006514 3.5e-135 485.0 245 100.0
Lj2P1221T93 Lonicera japonica HOM05D001987 ORTHO05D006514 2.6e-130 468.8 237 100.0
TAR358G0001 Trochodendron aralioides HOM05D001987 ORTHO05D006514 3.5e-119 431.8 233 94.0
Solyc00g500100.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 7.9e-119 430.6 233 93.1
Solyc00g500117.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 7.9e-119 430.6 233 93.1
Solyc00g500274.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 7.9e-119 430.6 233 93.1
TPR.G26049 Trifolium pratense HOM05D001987 ORTHO05D006514 1.1e-117 426.8 237 91.6
DCAR_032448 Daucus carota HOM05D001987 ORTHO05D006514 1.5e-117 426.4 233 92.7
LjContig00315g0000313 Lotus japonicus HOM05D001987 ORTHO05D006514 2.5e-117 425.6 233 93.1
Hma1.2p1_0105F.1_g050680 Hydrangea macrophylla HOM05D001987 ORTHO05D006514 3.3e-117 425.2 223 96.0
Lsat_1_v5_gn_0_38040 Lactuca sativa HOM05D001987 ORTHO05D006514 7.4e-117 424.1 233 92.7
Sc17g0003730 Simmondsia chinensis HOM05D001987 ORTHO05D006514 1.1e-112 410.2 226 92.0
Dinv06676 Davidia involucrata HOM05D001987 ORTHO05D006514 1.2e-111 406.8 214 95.8
MBI05_g05348_MAGBIO Magnolia biondii HOM05D001987 ORTHO05D006514 7.9e-111 404.1 228 90.4
Solyc00g500309.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 4.3e-109 398.3 233 88.4
CANSAT16G0046 Cannabis sativa HOM05D001987 ORTHO05D006514 1.6e-108 396.4 222 92.3
Solyc00g500245.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 2.8e-108 395.6 214 93.0
Cfa023008 Carpinus fangiana HOM05D001987 ORTHO05D006514 1.4e-107 393.3 214 92.5
arahy.Tifrunner.gnm1.ann1.8UR9GU Arachis hypogaea HOM05D001987 ORTHO05D006514 2.6e-106 389.0 225 88.9
arahy.Tifrunner.gnm1.ann1.K88Y93 Arachis hypogaea HOM05D001987 ORTHO05D006514 2.6e-106 389.0 225 88.9
arahy.Tifrunner.gnm1.ann1.TY26DT Arachis hypogaea HOM05D001987 ORTHO05D006514 2.6e-106 389.0 225 88.9
Psat7g012480 Pisum sativum HOM05D001987 ORTHO05D006514 2.6e-106 389.0 214 92.5
SHI29633 Sapria himalayana HOM05D001987 ORTHO05D006514 2.1e-95 352.8 213 86.4
Ah.10g028690 Amaranthus hybridus HOM05D001987 ORTHO05D006514 2.7e-95 352.4 224 81.7
CARHR282630 Cardamine hirsuta HOM05D001987 ORTHO05D006514 4.6e-95 351.7 238 80.7
Hund28418 Selenicereus undatus HOM05D001987 ORTHO05D006514 1.0e-94 350.5 226 80.1
Hund29734 Selenicereus undatus HOM05D001987 ORTHO05D006514 1.0e-94 350.5 226 80.1
Hund29823 Selenicereus undatus HOM05D001987 ORTHO05D006514 1.0e-94 350.5 226 80.1
Hund30343 Selenicereus undatus HOM05D001987 ORTHO05D006514 1.0e-94 350.5 226 80.1
Hund30419 Selenicereus undatus HOM05D001987 ORTHO05D006514 1.0e-94 350.5 226 80.1
SHI20096 Sapria himalayana HOM05D001987 ORTHO05D006514 1.3e-94 350.1 213 85.9
ATMG00090 Arabidopsis thaliana HOM05D001987 ORTHO05D006514 1.8e-94 349.7 238 80.3
CsaV3_UNG208600 Cucumis sativus L. HOM05D001987 ORTHO05D006514 3.9e-94 348.6 212 84.4
A04p09400 Brassica napus HOM05D001987 ORTHO05D006514 1.1e-93 347.1 238 80.3
Lalb_Chr00c21g0405751 Lupinus albus HOM05D001987 ORTHO05D006514 1.3e-92 343.6 193 91.2
Lalb_Chr00c24g0407071 Lupinus albus HOM05D001987 ORTHO05D006514 1.3e-92 343.6 193 91.2
Lalb_Chr11g0070101 Lupinus albus HOM05D001987 ORTHO05D006514 4.1e-91 338.6 193 90.2
HanXRQChr16g0504311 Helianthus annuus HOM05D001987 ORTHO05D006514 5.3e-91 338.2 194 90.7
HanXRQMTg0579601 Helianthus annuus HOM05D001987 ORTHO05D006514 5.3e-91 338.2 194 90.7
BolSC28t60371H Brassica oleracea HOM05D001987 ORTHO05D006514 1.3e-89 333.6 238 77.7
HanXRQChr05g0147721 Helianthus annuus HOM05D001987 ORTHO05D006514 1.3e-89 333.6 194 89.7
Ah.10g027970 Amaranthus hybridus HOM05D001987 ORTHO05D006514 2.2e-89 332.8 212 81.6
PSO675G5335 Papaver somniferum HOM05D001987 ORTHO05D006514 2.7e-87 325.9 225 74.2
CARHR288240 Cardamine hirsuta HOM05D001987 ORTHO05D006514 3.6e-87 325.5 222 80.2
PSO541G5803 Papaver somniferum HOM05D001987 ORTHO05D006514 3.6e-87 325.5 225 73.8
Peaxi162Scf01098g00013 Petunia axillaris HOM05D001987 ORTHO05D006514 4.6e-87 325.1 180 92.8
arahy.Tifrunner.gnm1.ann1.7A4IEF Arachis hypogaea HOM05D001987 ORTHO05D006514 2.3e-86 322.8 223 77.6
Nitab4.5_0009561g0020 Nicotiana tabacum HOM05D001987 ORTHO05D006514 2.0e-85 319.7 196 84.7
ATR0661G567 Amborella trichopoda HOM05D001987 ORTHO05D006514 3.3e-85 318.9 231 75.8
CDE02G0251 Ceratophyllum demersum HOM05D001987 ORTHO05D006514 1.7e-84 316.6 264 66.7
ClCG08G015640 Citrullus lanatus HOM05D001987 ORTHO05D006514 3.4e-82 308.9 193 83.9
Eucgr.H02719 Eucalyptus grandis HOM05D001987 ORTHO05D006514 1.0e-78 297.4 237 70.0
SGA_v2.0_scaffold255G45472 Striga asiatica HOM05D001987 ORTHO05D006514 2.6e-77 292.7 229 71.2
Hund12658 Selenicereus undatus HOM05D001987 ORTHO05D006514 3.7e-76 288.9 220 70.5
Solyc12g038985.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 3.1e-75 285.8 227 71.8
Gorai.001G161500 Gossypium raimondii HOM05D001987 ORTHO05D006514 1.1e-67 260.8 189 76.2
BraSC159t45730Z Brassica rapa HOM05D001987 ORTHO05D006514 2.1e-63 246.5 173 79.2
Lsat_1_v5_gn_8_132861 Lactuca sativa HOM05D001987 ORTHO05D006514 2.1e-63 246.5 134 94.0
SEGI_40200 Sequoiadendron giganteum HOM05D001987 ORTHO05D006514 1.6e-55 220.3 219 59.8
Sp3g25720 Schrenkiella parvula HOM05D001987 ORTHO05D006514 2.0e-53 213.4 142 82.4
Ah.02g118900 Amaranthus hybridus HOM05D001987 ORTHO05D006514 6.6e-49 198.4 212 54.7
Dinv35896 Davidia involucrata HOM05D001987 ORTHO05D006514 4.9e-44 182.2 134 74.6
HanXRQChr14g0433081 Helianthus annuus HOM05D001987 ORTHO05D006514 3.5e-42 176.0 125 75.2
Nitab4.5_0000334g0030 Nicotiana tabacum HOM05D001987 ORTHO05D006514 4.6e-42 175.6 191 57.6
BolSC28t60315H Brassica oleracea HOM05D001987 ORTHO05D006514 1.7e-41 173.7 115 80.0
RhsimMtG0002600 Rhododendron simsii HOM05D001987 ORTHO05D006514 3.9e-41 172.6 89 92.1
Nitab4.5_0000309g0180 Nicotiana tabacum HOM05D001987 ORTHO05D005620 3.6e-39 166.0 108 82.4
Nitab4.5_0007876g0050 Nicotiana tabacum HOM05D001987 ORTHO05D006514 2.0e-37 160.2 178 56.7
Ca_30750_v3 Cicer arietinum L. HOM05D001987 ORTHO05D006514 2.0e-34 150.2 214 44.4
Solyc12g035820.3 Solanum lycopersicum HOM05D001987 ORTHO05D006514 1.9e-32 143.7 104 73.1
unitig_87.g28029 Utricularia gibba HOM05D001987 ORTHO05D006514 3.3e-32 142.9 214 43.0
SalBow1G3504 Salvia bowleyana HOM05D001987 ORTHO05D006514 3.6e-31 139.4 214 43.0
SalBow1G4210 Salvia bowleyana HOM05D001987 ORTHO05D006514 3.6e-31 139.4 214 43.0
Aa31csc822G30 Aethionema arabicum HOM05D001987 ORTHO05D006514 1.4e-30 137.5 88 81.8
Gohir.A13G113500 Gossypium hirsutum HOM05D001987 ORTHO05D006514 4.0e-30 136.0 86 81.4
Nn1g10074 Nelumbo nucifera HOM05D001987 ORTHO05D006514 1.4e-27 127.5 67 89.6
Solyc08g045870.3 Solanum lycopersicum HOM05D001987 ORTHO05D006514 2.1e-26 123.6 71 88.7
Lalb_Chr11g0070921 Lupinus albus HOM05D001987 ORTHO05D006514 1.6e-23 114.0 63 85.7
Solyc05g045840.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 1.4e-22 110.9 67 82.1
arahy.Tifrunner.gnm1.ann1.D5EGR1 Arachis hypogaea HOM05D001987 ORTHO05D006514 1.8e-22 110.5 117 53.8
Nitab4.5_0000330g0070 Nicotiana tabacum HOM05D001987 ORTHO05D006514 3.4e-21 106.3 57 89.5
SHI01963 Sapria himalayana HOM05D001987 ORTHO05D006514 3.4e-21 106.3 96 62.5
Cpa.g.sc1367.1 Carica papaya HOM05D001987 ORTHO05D006514 4.4e-21 105.9 54 92.6
Actinidia34925 Actinidia chinensis HOM05D001987 ORTHO05D006514 4.9e-20 102.4 53 88.7
Nitab4.5_0007962g0010 Nicotiana tabacum HOM05D001987 ORTHO05D006514 4.9e-20 102.4 62 90.3
Hund30965 Selenicereus undatus HOM05D001987 ORTHO05D006514 4.9e-20 102.4 60 85.0
MBI16_g09478_MAGBIO Magnolia biondii HOM05D001987 ORTHO05D006514 8.4e-20 101.7 56 83.9
Peaxi162Scf00360g00815 Petunia axillaris HOM05D001987 ORTHO05D006514 4.1e-19 99.4 71 70.4
arahy.Tifrunner.gnm1.ann1.L3L3JQ Arachis hypogaea HOM05D001987 ORTHO05D006514 1.2e-18 97.8 192 37.0
SHI11171 Sapria himalayana HOM05D001987 ORTHO05D006514 4.6e-18 95.9 152 44.7
Solyc03g063770.3 Solanum lycopersicum HOM05D001987 ORTHO05D006514 7.8e-18 95.1 57 80.7
AagrBONN_evm.TU.Sc2ySwM_362.2082 Anthoceros agrestis HOM05D001987 ORTHO05D006514 3.9e-17 92.8 125 41.6
Solyc05g045826.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 5.2e-14 82.4 87 59.8
Psat1g091000 Pisum sativum HOM05D001987 ORTHO05D006514 6.9e-14 82.0 43 90.7
SHI01964 Sapria himalayana HOM05D001987 ORTHO05D006514 6.9e-14 82.0 69 62.3
Solyc05g045920.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 6.9e-14 82.0 44 88.6
Pp3c2_23480 Physcomitrium patens HOM05D001987 ORTHO05D006514 9.0e-14 81.6 124 41.9
Solyc05g045828.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 4.4e-13 79.3 46 89.1
Peaxi162Scf00934g00143 Petunia axillaris HOM05D001987 ORTHO05D006514 5.8e-13 79.0 139 38.1
SGA_v2.0_scaffold245G44435 Striga asiatica HOM05D001987 ORTHO05D006514 4.9e-12 75.9 38 92.1
ECA240G1514 Erigeron canadensis HOM05D001987 ORTHO05D006514 8.4e-12 75.1 66 63.6
Zm00001eb039190 Zea mays HOM05D002578 ORTHO05D005154 1.9e-11 73.9 158 34.8
Zm00001eb097380 Zea mays HOM05D002578 ORTHO05D005154 1.9e-11 73.9 158 34.8
Medtr0002s0790 Medicago truncatula HOM05D002578 ORTHO05D005154 1.3e-09 67.8 126 34.1
Medtr4g051410 Medicago truncatula HOM05D002578 ORTHO05D005154 6.6e-09 65.5 178 30.3
arahy.Tifrunner.gnm1.ann1.I6CLRS Arachis hypogaea HOM05D002578 ORTHO05D005154 1.9e-08 63.9 179 31.8
LjContig00318g0021445 Lotus japonicus HOM05D002578 ORTHO05D005154 1.9e-08 63.9 168 31.5
LjContig00319g0008344 Lotus japonicus HOM05D002578 ORTHO05D005154 1.9e-08 63.9 168 31.5
LjContig00319g0015839 Lotus japonicus HOM05D002578 ORTHO05D005154 1.9e-08 63.9 168 31.5
QL93p1043_0025 Quercus lobata HOM05D002578 ORTHO05D005154 9.6e-08 61.6 114 34.2
ATR0306G002 Amborella trichopoda HOM05D002578 ORTHO05D005154 1.3e-07 61.2 126 33.3
Sed0023475 Sechium edule HOM05D002578 ORTHO05D005154 1.6e-07 60.8 114 34.2
DCAR_032524 Daucus carota HOM05D002578 ORTHO05D005154 2.1e-07 60.5 178 30.3
HanXRQChr00c0557g0575711 Helianthus annuus HOM05D002578 ORTHO05D005154 2.1e-07 60.5 114 33.3
HanXRQChr00c0593g0576401 Helianthus annuus HOM05D002578 ORTHO05D005154 2.1e-07 60.5 114 33.3
HanXRQChr01g0020181 Helianthus annuus HOM05D002578 ORTHO05D005154 2.1e-07 60.5 114 33.3
HanXRQChr04g0127451 Helianthus annuus HOM05D002578 ORTHO05D005154 2.1e-07 60.5 114 33.3
HanXRQChr10g0318021 Helianthus annuus HOM05D002578 ORTHO05D005154 2.1e-07 60.5 114 33.3
HanXRQChr12g0369891 Helianthus annuus HOM05D002578 ORTHO05D005154 2.1e-07 60.5 114 33.3
HanXRQCPg0580221 Helianthus annuus HOM05D002578 ORTHO05D005154 2.1e-07 60.5 114 33.3
PSO548G0101 Papaver somniferum HOM05D002578 ORTHO05D005154 2.1e-07 60.5 119 32.8
AL1G45070 Arabidopsis lyrata HOM05D002578 ORTHO05D005154 3.6e-07 59.7 114 33.3
AL2G20530 Arabidopsis lyrata HOM05D002578 ORTHO05D005154 3.6e-07 59.7 114 33.3
arahy.Tifrunner.gnm1.ann1.YJ6L74 Arachis hypogaea HOM05D002578 ORTHO05D005154 3.6e-07 59.7 150 32.0
SEGI_12372 Sequoiadendron giganteum HOM05D000445 ORTHO05D005154 3.6e-07 59.7 111 33.3
Solyc00g500034.1 Solanum lycopersicum HOM05D002578 ORTHO05D005154 3.6e-07 59.7 114 35.1
Hund27846 Selenicereus undatus HOM05D001987 ORTHO05D004018 4.8e-07 59.3 51 58.8
TAR375G1061 Trochodendron aralioides HOM05D002578 ORTHO05D005154 4.8e-07 59.3 114 33.3
ATCG00800 Arabidopsis thaliana HOM05D002578 ORTHO05D005154 6.2e-07 58.9 178 29.8
CAN.G424.95 Capsicum annuum HOM05D002578 ORTHO05D005154 6.2e-07 58.9 114 34.2
CARHR282270 Cardamine hirsuta HOM05D002578 ORTHO05D005154 6.2e-07 58.9 178 29.8
Thhalv10010706m.g Eutrema salsugineum HOM05D002578 ORTHO05D005154 6.2e-07 58.9 178 29.8
Gohir.D06G105066 Gossypium hirsutum HOM05D002578 ORTHO05D005154 6.2e-07 58.9 152 30.3
Peaxi162Scf00299g00118 Petunia axillaris HOM05D002578 ORTHO05D005154 6.2e-07 58.9 114 33.3
SEGI_06984 Sequoiadendron giganteum HOM05D002578 ORTHO05D005154 6.2e-07 58.9 132 31.1
BNapus_Darmor_BZH_scaffold_253p00370 Brassica napus HOM05D002578 ORTHO05D005154 8.1e-07 58.5 178 29.8
C03p38130 Brassica napus HOM05D002578 ORTHO05D005154 8.1e-07 58.5 178 29.8
BolSC29t60532H Brassica oleracea HOM05D002578 ORTHO05D005154 8.1e-07 58.5 178 29.8
BolSC35t60726H Brassica oleracea HOM05D002578 ORTHO05D005154 8.1e-07 58.5 178 29.2
BolSC56t61245H Brassica oleracea HOM05D002578 ORTHO05D005154 8.1e-07 58.5 178 29.8
BraA06t25386Z Brassica rapa HOM05D002578 ORTHO05D005154 8.1e-07 58.5 178 29.8
BraSC103t45443Z Brassica rapa HOM05D002578 ORTHO05D005154 8.1e-07 58.5 178 29.8
BraSC103t45487Z Brassica rapa HOM05D002578 ORTHO05D005154 8.1e-07 58.5 178 29.8
BraSC138t45551Z Brassica rapa HOM05D002578 ORTHO05D005154 8.1e-07 58.5 178 29.8
BraSC59t46568Z Brassica rapa HOM05D002578 ORTHO05D005154 8.1e-07 58.5 178 29.8
Ah.10g027440 Amaranthus hybridus HOM05D002578 ORTHO05D005154 1.1e-06 58.2 142 30.3
Gohir.D01G102164 Gossypium hirsutum HOM05D002578 ORTHO05D005154 1.1e-06 58.2 114 34.2
Hma1.2p1_0104F.1_g050140 Hydrangea macrophylla HOM05D002578 ORTHO05D005154 1.1e-06 58.2 114 32.5
Hma1.2p1_0298F.1_g117740 Hydrangea macrophylla HOM05D002578 ORTHO05D005154 1.1e-06 58.2 114 32.5
Hma1.2p1_0818F.1_g223306 Hydrangea macrophylla HOM05D002578 ORTHO05D005154 1.1e-06 58.2 114 32.5
PGR111G0034 Punica granatum HOM05D002578 ORTHO05D005154 1.1e-06 58.2 178 30.3
SEGI_06953 Sequoiadendron giganteum HOM05D000540 ORTHO05D000681 1.1e-06 58.2 126 33.3
SEGI_26563 Sequoiadendron giganteum HOM05D000540 ORTHO05D002320 1.1e-06 58.2 126 33.3
SEGI_30011 Sequoiadendron giganteum HOM05D000540 ORTHO05D000681 1.1e-06 58.2 126 33.3
SEGI_35211 Sequoiadendron giganteum HOM05D000540 ORTHO05D000681 1.1e-06 58.2 126 33.3
SEGI_36364 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 1.1e-06 58.2 126 33.3
SEGI_41075 Sequoiadendron giganteum HOM05D000540 ORTHO05D005154 1.1e-06 58.2 126 33.3
Lsat_1_v5_gn_3_22620 Lactuca sativa HOM05D002578 ORTHO05D005154 1.4e-06 57.8 111 33.3
SalBow1G1132 Salvia bowleyana HOM05D002578 ORTHO05D005154 1.4e-06 57.8 178 29.2
Gohir.A02G112702 Gossypium hirsutum HOM05D002578 ORTHO05D005154 1.8e-06 57.4 116 33.6
Gohir.A09G101600 Gossypium hirsutum HOM05D002578 ORTHO05D005154 1.8e-06 57.4 114 33.3
Sed0004436 Sechium edule HOM05D002578 ORTHO05D005154 1.8e-06 57.4 115 33.9
CSS0047935 Camellia sinensis var. sinensis HOM05D002578 ORTHO05D005154 2.4e-06 57.0 133 30.8
Gohir.1Z049834 Gossypium hirsutum HOM05D002578 ORTHO05D005154 2.4e-06 57.0 114 33.3
Cpa.g.sc0.194 Carica papaya HOM05D002578 ORTHO05D005154 4.0e-06 56.2 178 28.7
Psat5g168200 Pisum sativum HOM05D002578 ORTHO05D005154 4.0e-06 56.2 166 29.5
SEGI_07135 Sequoiadendron giganteum HOM05D000890 ORTHO05D000697 4.0e-06 56.2 126 32.5
SEGI_32412 Sequoiadendron giganteum HOM05D000540 ORTHO05D005154 4.0e-06 56.2 126 32.5
Duzib026G0002 Durio zibethinus HOM05D002578 ORTHO05D005154 5.3e-06 55.8 178 29.2
Duzib086G0007 Durio zibethinus HOM05D002578 ORTHO05D005154 5.3e-06 55.8 178 29.2
Duzib125G0004 Durio zibethinus HOM05D002578 ORTHO05D005154 5.3e-06 55.8 178 29.2
Duzib256G0002 Durio zibethinus HOM05D002578 ORTHO05D005154 5.3e-06 55.8 178 29.2
TPR.G21771 Trifolium pratense HOM05D001987 ORTHO05D006514 5.3e-06 55.8 30 80.0
Gohir.D11G067600 Gossypium hirsutum HOM05D002578 ORTHO05D005154 6.9e-06 55.5 178 29.8
MD14G1153600 Malus domestica HOM05D002578 ORTHO05D005154 6.9e-06 55.5 67 40.3
Sc25g0002070 Simmondsia chinensis HOM05D002578 ORTHO05D005154 9.0e-06 55.1 142 29.6


User provided reference genes

Program Settings