Gene: SEGI_32412
General Information
Structural Information
- Species Sequoiadendron giganteum
- Gene Identifier SEGI_32412
- Transcript Identifier SEGI_32412.1
- Gene Type Coding gene
- Location chr1 : 443506395-443513201 : positive
Gene Family Information
- ID HOM05D000540
- #Genes/#Species 1013/99
- Phylogenetic origin
- ID ORTHO05D005154
- #Genes/#Species 163/55
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- tid SEGI_32412.1
Descriptions
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006412 | IEA | InterPro | translation |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003735 | IEA | InterPro | structural constituent of ribosome | |
| GO:0003723 | IEA | InterPro | RNA binding | |
| GO:0016740 | IEA | InterPro | transferase activity | |
| GO:0005524 | IEA | InterPro | ATP binding | |
| GO:0016887 | IEA | InterPro | ATP hydrolysis activity | |
| GO:0003729 | ISO | PLAZA Integrative Orthology | mRNA binding | ATCG00800 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005840 | IEA | InterPro | ribosome | |
| GO:0015934 | IEA | InterPro | large ribosomal subunit | |
| GO:0009570 | ISO | PLAZA Integrative Orthology | chloroplast stroma | ATCG00800 |
| GO:0009507 | ISO | PLAZA Integrative Orthology | chloroplast | ATCG00800 |
| GO:0009941 | ISO | PLAZA Integrative Orthology | chloroplast envelope | ATCG00800 |
| GO:0000312 | ISO | PLAZA Integrative Orthology | plastid small ribosomal subunit | ATCG00800 |
| GO:0042644 | ISO | PLAZA Integrative Orthology | chloroplast nucleoid | ATCG00800 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR002171 | Ribosomal protein L2 |
| IPR005880 | Ribosomal protein L2, bacterial/organellar-type |
| IPR014726 | Ribosomal protein L2, domain 3 |
| IPR014722 | Ribosomal protein L2, domain 2 |
| IPR008991 | Translation protein SH3-like domain superfamily |
| IPR036419 | Ribosomal protein S3, C-terminal domain superfamily |
| IPR005704 | Ribosomal protein S3, bacterial-type |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR022669 | Ribosomal protein L2, C-terminal |
| IPR003959 | ATPase, AAA-type, core |
| IPR003593 | AAA+ ATPase domain |
| IPR001351 | Ribosomal protein S3, C-terminal |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |