Notice (8): Undefined variable: source_groups_information [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001987', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '333', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A04p09400' => 'bna', 'A07p38510' => 'bna', 'Aa31csc822G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.831' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2082' => 'aag', 'Actinidia34925' => 'ach', 'Ah.01g011840' => 'amhyb', 'Ah.02g118900' => 'amhyb', 'Ah.06g195180' => 'amhyb', 'Ah.10g027330' => 'amhyb', 'Ah.10g027450' => 'amhyb', 'Ah.10g027970' => 'amhyb', 'Ah.10g028680' => 'amhyb', 'Ah.10g028690' => 'amhyb', 'Ah.10g028990' => 'amhyb', 'AL1G67310' => 'aly', 'AL2G20540' => 'aly', 'AL2G21740' => 'aly', 'AL4G23360' => 'aly', 'AL5G20250' => 'aly', 'Aqoxy4G01609' => 'aox', 'Aqoxy5G00594' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4JG1UT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A4IEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YIJR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8UR9GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5EGR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2JJBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K88Y93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L3L3JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MWRF4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T14CIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TY26DT' => 'arhy', 'AT2G28815' => 'ath', 'ATCG00790' => 'ath', 'ATMG00080' => 'ath', 'ATMG00090' => 'ath', 'ATR0424G001' => 'atr', 'ATR0620G114' => 'atr', 'ATR0661G567' => 'atr', 'Atru.chr11.441' => 'acertr', 'BcaB03g14981' => 'bca', 'BcaC08g46689' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00360' => 'bna', 'BolC6t39714H' => 'bol', 'BolSC28t60315H' => 'bol', 'BolSC28t60316H' => 'bol', 'BolSC28t60371H' => 'bol', 'BolSC29t60531H' => 'bol', 'BolSC29t60612H' => 'bol', 'BolSC29t60628H' => 'bol', 'BolSC35t60672H' => 'bol', 'BolSC35t60727H' => 'bol', 'BolSC49t61161H' => 'bol', 'BolSC56t61246H' => 'bol', 'BraA07t31411Z' => 'bra', 'BraSC159t45730Z' => 'bra', 'BraSC48t46240Z' => 'bra', 'BraSC48t46330Z' => 'bra', 'BraSC48t46331Z' => 'bra', 'BraSC54t46368Z' => 'bra', 'BraSC58t46443Z' => 'bra', 'C03p38120' => 'bna', 'C06p46690' => 'bna', 'CAN.G1202.8' => 'can', 'CAN.G1542.10' => 'can', 'CANSAT16G0046' => 'cansat', 'CARHR127990' => 'chi', 'CARHR282630' => 'chi', 'CARHR287450' => 'chi', 'CARHR288240' => 'chi', 'Carub.0004s0981' => 'cru', 'Ca_30750_v3' => 'car', 'CDE02G0251' => 'cde', 'CDE02G0755' => 'cde', 'Cfa023008' => 'cfa', 'Cfa025269' => 'cfa', 'Ciclev10004001m.g' => 'ccl', 'Ciclev10013231m.g' => 'ccl', 'Ciclev10021160m.g' => 'ccl', 'Ciclev10024383m.g' => 'ccl', 'CiPaw.01G253800' => 'cil', 'CiPaw.03G280800' => 'cil', 'ClCG00G004300' => 'cla', 'ClCG08G009700' => 'cla', 'ClCG08G015640' => 'cla', 'ClCG11G014310' => 'cla', 'Cpa.g.sc1367.1' => 'cpa', 'Cre06.g278224' => 'cre', 'CsaV3_UNG208600' => 'csa', 'DCAR_032447' => 'dca', 'DCAR_032448' => 'dca', 'DCAR_032523' => 'dca', 'Dinv06676' => 'din', 'Dinv35896' => 'din', 'ECA236G3336' => 'eca', 'ECA240G1514' => 'eca', 'EL10Ac1g01304' => 'bvu', 'EL10Ac4g10036' => 'bvu', 'EL10Ac5g11671' => 'bvu', 'EL10Ac5g12759' => 'bvu', 'EL10As12g24036' => 'bvu', 'Eucgr.A01256' => 'egr', 'Eucgr.H02719' => 'egr', 'Eucgr.J02744' => 'egr', 'FAN11G2273' => 'fan', 'FAN16G3148' => 'fan', 'FAN21G1218' => 'fan', 'FAN25G2706' => 'fan', 'FvH4_3g18440' => 'fve', 'Gohir.1Z049902' => 'ghi', 'Gohir.1Z049934' => 'ghi', 'Gohir.A03G162750' => 'ghi', 'Gohir.A05G144450' => 'ghi', 'Gohir.A05G396300' => 'ghi', 'Gohir.A12G024600' => 'ghi', 'Gohir.A12G178655' => 'ghi', 'Gohir.A13G113500' => 'ghi', 'Gohir.D01G102151' => 'ghi', 'Gohir.D01G121380' => 'ghi', 'Gohir.D01G157901' => 'ghi', 'Gohir.D08G014666' => 'ghi', 'Gohir.D09G095250' => 'ghi', 'Gohir.D12G072201' => 'ghi', 'Gorai.001G161500' => 'gra', 'Gorai.002G152200' => 'gra', 'Gorai.002G196000' => 'gra', 'Gorai.004G166700' => 'gra', 'Gorai.008G079300' => 'gra', 'HanXRQChr00c0349g0573951' => 'han', 'HanXRQChr00c0557g0575721' => 'han', 'HanXRQChr00c0593g0576391' => 'han', 'HanXRQChr01g0013341' => 'han', 'HanXRQChr01g0013351' => 'han', 'HanXRQChr01g0020191' => 'han', 'HanXRQChr04g0127461' => 'han', 'HanXRQChr05g0147721' => 'han', 'HanXRQChr05g0152551' => 'han', 'HanXRQChr06g0172541' => 'han', 'HanXRQChr10g0284411' => 'han', 'HanXRQChr10g0318031' => 'han', 'HanXRQChr11g0321121' => 'han', 'HanXRQChr11g0326991' => 'han', 'HanXRQChr11g0345301' => 'han', 'HanXRQChr12g0369881' => 'han', 'HanXRQChr14g0433081' => 'han', 'HanXRQChr15g0486801' => 'han', 'HanXRQChr16g0504311' => 'han', 'HanXRQChr16g0530211' => 'han', 'HanXRQChr17g0554541' => 'han', 'HanXRQCPg0580211' => 'han', 'HanXRQMTg0579601' => 'han', 'Haze_07953' => 'cav', 'Haze_16657' => 'cav', 'Hma1.2p1_0105F.1_g050680' => 'hma', 'Hund04058' => 'sun', 'Hund08207' => 'sun', 'Hund10099' => 'sun', 'Hund12658' => 'sun', 'Hund26845' => 'sun', 'Hund27846' => 'sun', 'Hund28045' => 'sun', 'Hund28418' => 'sun', 'Hund29038' => 'sun', 'Hund29684' => 'sun', 'Hund29734' => 'sun', 'Hund29823' => 'sun', 'Hund30343' => 'sun', 'Hund30390' => 'sun', 'Hund30392' => 'sun', 'Hund30419' => 'sun', 'Hund30965' => 'sun', 'Hund31335' => 'sun', 'Lalb_Chr00c21g0405751' => 'lal', 'Lalb_Chr00c24g0407071' => 'lal', 'Lalb_Chr03g0039341' => 'lal', 'Lalb_Chr11g0070091' => 'lal', 'Lalb_Chr11g0070101' => 'lal', 'Lalb_Chr11g0070921' => 'lal', 'Lalb_Chr13g0291611' => 'lal', 'Lalb_Chr18g0049321' => 'lal', 'Lalb_Chr19g0127771' => 'lal', 'Lalb_Chr23g0274251' => 'lal', 'Lj2C1237T35' => 'lonja', 'Lj2P1221T93' => 'lonja', 'Lj2P1230T111' => 'lonja', 'LjContig00315g0000313' => 'lja', 'LjContig00318g0015359' => 'lja', 'Lsat_1_v5_gn_0_38040' => 'lsa', 'Lsat_1_v5_gn_4_106021' => 'lsa', 'Lsat_1_v5_gn_4_178801' => 'lsa', 'Lsat_1_v5_gn_8_132861' => 'lsa', 'Lsat_1_v5_gn_8_92120' => 'lsa', 'Mapoly0052s0079' => 'mpo', 'Mapoly0118s0046' => 'mpo', 'MBI05_g05348_MAGBIO' => 'mbi', 'MBI16_g09478_MAGBIO' => 'mbi', 'MD06G1012400' => 'mdo', 'Medtr0002s0780' => 'mtr', 'Medtr0702s0030' => 'mtr', 'Medtr1779s0010' => 'mtr', 'Medtr2g087560' => 'mtr', 'Medtr4g034750' => 'mtr', 'Medtr8g081460' => 'mtr', 'MELO3C000108.2' => 'cme', 'MELO3C028575.2' => 'cme', 'Migut.D01329' => 'egut', 'Nitab4.5_0000216g0140' => 'nta', 'Nitab4.5_0000309g0180' => 'nta', 'Nitab4.5_0000309g0190' => 'nta', 'Nitab4.5_0000309g0210' => 'nta', 'Nitab4.5_0000309g0220' => 'nta', 'Nitab4.5_0000330g0070' => 'nta', 'Nitab4.5_0000334g0030' => 'nta', 'Nitab4.5_0000334g0040' => 'nta', 'Nitab4.5_0000451g0190' => 'nta', 'Nitab4.5_0001153g0110' => 'nta', 'Nitab4.5_0001761g0040' => 'nta', 'Nitab4.5_0002589g0040' => 'nta', 'Nitab4.5_0002616g0170' => 'nta', 'Nitab4.5_0007104g0030' => 'nta', 'Nitab4.5_0007876g0050' => 'nta', 'Nitab4.5_0007962g0010' => 'nta', 'Nitab4.5_0009561g0020' => 'nta', 'Nitab4.5_0009561g0030' => 'nta', 'Nitab4.5_0009703g0120' => 'nta', 'Nitab4.5_0010033g0070' => 'nta', 'Nitab4.5_0011784g0040' => 'nta', 'Nn002s41363' => 'nnu', 'Nn021s41520' => 'nnu', 'Nn070s42373' => 'nnu', 'Nn1g01958' => 'nnu', 'Nn1g10074' => 'nnu', 'Os11g0269100' => 'osa', 'Peaxi162Scf00084g00915' => 'pax', 'Peaxi162Scf00238g00149' => 'pax', 'Peaxi162Scf00360g00814' => 'pax', 'Peaxi162Scf00360g00815' => 'pax', 'Peaxi162Scf00934g00143' => 'pax', 'Peaxi162Scf01098g00013' => 'pax', 'PGR111G0010' => 'pgr', 'PGSC0003DMG400013869' => 'stu', 'PGSC0003DMG400030936' => 'stu', 'PGSC0003DMG400042640' => 'stu', 'Pp3c2_23477' => 'ppa', 'Pp3c2_23480' => 'ppa', 'Psat0s1446g0200' => 'psa', 'Psat0s406g0040' => 'psa', 'Psat1g091000' => 'psa', 'Psat3g190880' => 'psa', 'Psat5g096040' => 'psa', 'Psat6g191040' => 'psa', 'Psat7g012480' => 'psa', 'PSO541G5803' => 'pso', 'PSO548G0086' => 'pso', 'PSO675G5335' => 'pso', 'PSO675G5880' => 'pso', 'PSO675G6514' => 'pso', 'QL07p023375' => 'qlo', 'QL93p1043_0023' => 'qlo', 'RcHm_v2.0_Chr2g0118571' => 'rch', 'RcHm_v2.0_Chr5g0031171' => 'rch', 'RcHm_v2.0_MTg0498421' => 'rch', 'RhsimMtG0002600' => 'rsi', 'SabraMtG0007200' => 'sbr', 'SalBow1G3504' => 'sbo', 'SalBow1G4210' => 'sbo', 'SalBow6G6095' => 'sbo', 'Sc17g0003730' => 'sci', 'Sc25g0002060' => 'sci', 'Sed0005999' => 'sed', 'Sed0015467' => 'sed', 'SEGI_15837' => 'sgi', 'SEGI_15868' => 'sgi', 'SEGI_19238' => 'sgi', 'SEGI_40200' => 'sgi', 'SGA_v2.0_scaffold245G44435' => 'sas', 'SGA_v2.0_scaffold255G45472' => 'sas', 'SGA_v2.0_scaffold324G48665' => 'sas', 'SGA_v2.0_scaffold3325G54315' => 'sas', 'SGA_v2.0_scaffold339G49282' => 'sas', 'SHI01961' => 'shi', 'SHI01963' => 'shi', 'SHI01964' => 'shi', 'SHI07819' => 'shi', 'SHI11170' => 'shi', 'SHI11171' => 'shi', 'SHI20096' => 'shi', 'SHI29633' => 'shi', 'SMO059G0001' => 'smo', 'SMO086G0056' => 'smo', 'SMO172G0196' => 'smo', 'Solyc00g500032.1' => 'sly', 'Solyc00g500077.1' => 'sly', 'Solyc00g500100.1' => 'sly', 'Solyc00g500117.1' => 'sly', 'Solyc00g500154.1' => 'sly', 'Solyc00g500245.1' => 'sly', 'Solyc00g500274.1' => 'sly', 'Solyc00g500309.1' => 'sly', 'Solyc03g063770.3' => 'sly', 'Solyc05g045770.1' => 'sly', 'Solyc05g045780.1' => 'sly', 'Solyc05g045822.1' => 'sly', 'Solyc05g045824.1' => 'sly', 'Solyc05g045826.1' => 'sly', 'Solyc05g045828.1' => 'sly', 'Solyc05g045840.1' => 'sly', 'Solyc05g045920.1' => 'sly', 'Solyc06g008140.1' => 'sly', 'Solyc08g045870.3' => 'sly', 'Solyc08g074700.1' => 'sly', 'Solyc09g015850.4' => 'sly', 'Solyc09g015860.1' => 'sly', 'Solyc09g050065.1' => 'sly', 'Solyc10g006910.3' => 'sly', 'Solyc12g035815.1' => 'sly', 'Solyc12g035820.3' => 'sly', 'Solyc12g038985.1' => 'sly', 'Sopen05g027050' => 'spe', 'Sopen05g027070' => 'spe', 'Sopen08g010250' => 'spe', 'Sopen10g002820' => 'spe', 'Sp3g25720' => 'spa', 'TAR358G0001' => 'tar', 'TAR365G0637' => 'tar', 'TAR375G0860' => 'tar', 'Thhalv10001268m.g' => 'esa', 'Thhalv10018971m.g' => 'esa', 'TPR.G21771' => 'tpr', 'TPR.G26049' => 'tpr', 'unitig_87.g28029' => 'ugi', 'unitig_91.g26513' => 'ugi' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001987', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001987' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001987', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '333', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001987' ) ), 'genes' => array( 'A04p09400' => 'bna', 'A07p38510' => 'bna', 'Aa31csc822G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.831' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2082' => 'aag', 'Actinidia34925' => 'ach', 'Ah.01g011840' => 'amhyb', 'Ah.02g118900' => 'amhyb', 'Ah.06g195180' => 'amhyb', 'Ah.10g027330' => 'amhyb', 'Ah.10g027450' => 'amhyb', 'Ah.10g027970' => 'amhyb', 'Ah.10g028680' => 'amhyb', 'Ah.10g028690' => 'amhyb', 'Ah.10g028990' => 'amhyb', 'AL1G67310' => 'aly', 'AL2G20540' => 'aly', 'AL2G21740' => 'aly', 'AL4G23360' => 'aly', 'AL5G20250' => 'aly', 'Aqoxy4G01609' => 'aox', 'Aqoxy5G00594' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4JG1UT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A4IEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YIJR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8UR9GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5EGR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2JJBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K88Y93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L3L3JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MWRF4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T14CIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TY26DT' => 'arhy', 'AT2G28815' => 'ath', 'ATCG00790' => 'ath', 'ATMG00080' => 'ath', 'ATMG00090' => 'ath', 'ATR0424G001' => 'atr', 'ATR0620G114' => 'atr', 'ATR0661G567' => 'atr', 'Atru.chr11.441' => 'acertr', 'BcaB03g14981' => 'bca', 'BcaC08g46689' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00360' => 'bna', 'BolC6t39714H' => 'bol', 'BolSC28t60315H' => 'bol', 'BolSC28t60316H' => 'bol', 'BolSC28t60371H' => 'bol', 'BolSC29t60531H' => 'bol', 'BolSC29t60612H' => 'bol', 'BolSC29t60628H' => 'bol', 'BolSC35t60672H' => 'bol', 'BolSC35t60727H' => 'bol', 'BolSC49t61161H' => 'bol', 'BolSC56t61246H' => 'bol', 'BraA07t31411Z' => 'bra', 'BraSC159t45730Z' => 'bra', 'BraSC48t46240Z' => 'bra', 'BraSC48t46330Z' => 'bra', 'BraSC48t46331Z' => 'bra', 'BraSC54t46368Z' => 'bra', 'BraSC58t46443Z' => 'bra', 'C03p38120' => 'bna', 'C06p46690' => 'bna', 'CAN.G1202.8' => 'can', 'CAN.G1542.10' => 'can', 'CANSAT16G0046' => 'cansat', 'CARHR127990' => 'chi', 'CARHR282630' => 'chi', 'CARHR287450' => 'chi', 'CARHR288240' => 'chi', 'Carub.0004s0981' => 'cru', 'Ca_30750_v3' => 'car', 'CDE02G0251' => 'cde', 'CDE02G0755' => 'cde', 'Cfa023008' => 'cfa', 'Cfa025269' => 'cfa', 'Ciclev10004001m.g' => 'ccl', 'Ciclev10013231m.g' => 'ccl', 'Ciclev10021160m.g' => 'ccl', 'Ciclev10024383m.g' => 'ccl', 'CiPaw.01G253800' => 'cil', 'CiPaw.03G280800' => 'cil', 'ClCG00G004300' => 'cla', 'ClCG08G009700' => 'cla', 'ClCG08G015640' => 'cla', 'ClCG11G014310' => 'cla', 'Cpa.g.sc1367.1' => 'cpa', 'Cre06.g278224' => 'cre', 'CsaV3_UNG208600' => 'csa', 'DCAR_032447' => 'dca', 'DCAR_032448' => 'dca', 'DCAR_032523' => 'dca', 'Dinv06676' => 'din', 'Dinv35896' => 'din', 'ECA236G3336' => 'eca', 'ECA240G1514' => 'eca', 'EL10Ac1g01304' => 'bvu', 'EL10Ac4g10036' => 'bvu', 'EL10Ac5g11671' => 'bvu', 'EL10Ac5g12759' => 'bvu', 'EL10As12g24036' => 'bvu', 'Eucgr.A01256' => 'egr', 'Eucgr.H02719' => 'egr', 'Eucgr.J02744' => 'egr', 'FAN11G2273' => 'fan', 'FAN16G3148' => 'fan', 'FAN21G1218' => 'fan', 'FAN25G2706' => 'fan', 'FvH4_3g18440' => 'fve', 'Gohir.1Z049902' => 'ghi', 'Gohir.1Z049934' => 'ghi', 'Gohir.A03G162750' => 'ghi', 'Gohir.A05G144450' => 'ghi', 'Gohir.A05G396300' => 'ghi', 'Gohir.A12G024600' => 'ghi', 'Gohir.A12G178655' => 'ghi', 'Gohir.A13G113500' => 'ghi', 'Gohir.D01G102151' => 'ghi', 'Gohir.D01G121380' => 'ghi', 'Gohir.D01G157901' => 'ghi', 'Gohir.D08G014666' => 'ghi', 'Gohir.D09G095250' => 'ghi', 'Gohir.D12G072201' => 'ghi', 'Gorai.001G161500' => 'gra', 'Gorai.002G152200' => 'gra', 'Gorai.002G196000' => 'gra', 'Gorai.004G166700' => 'gra', 'Gorai.008G079300' => 'gra', 'HanXRQChr00c0349g0573951' => 'han', 'HanXRQChr00c0557g0575721' => 'han', 'HanXRQChr00c0593g0576391' => 'han', 'HanXRQChr01g0013341' => 'han', 'HanXRQChr01g0013351' => 'han', 'HanXRQChr01g0020191' => 'han', 'HanXRQChr04g0127461' => 'han', 'HanXRQChr05g0147721' => 'han', 'HanXRQChr05g0152551' => 'han', 'HanXRQChr06g0172541' => 'han', 'HanXRQChr10g0284411' => 'han', 'HanXRQChr10g0318031' => 'han', 'HanXRQChr11g0321121' => 'han', 'HanXRQChr11g0326991' => 'han', 'HanXRQChr11g0345301' => 'han', 'HanXRQChr12g0369881' => 'han', 'HanXRQChr14g0433081' => 'han', 'HanXRQChr15g0486801' => 'han', 'HanXRQChr16g0504311' => 'han', 'HanXRQChr16g0530211' => 'han', 'HanXRQChr17g0554541' => 'han', 'HanXRQCPg0580211' => 'han', 'HanXRQMTg0579601' => 'han', 'Haze_07953' => 'cav', 'Haze_16657' => 'cav', 'Hma1.2p1_0105F.1_g050680' => 'hma', 'Hund04058' => 'sun', 'Hund08207' => 'sun', 'Hund10099' => 'sun', 'Hund12658' => 'sun', 'Hund26845' => 'sun', 'Hund27846' => 'sun', 'Hund28045' => 'sun', 'Hund28418' => 'sun', 'Hund29038' => 'sun', 'Hund29684' => 'sun', 'Hund29734' => 'sun', 'Hund29823' => 'sun', 'Hund30343' => 'sun', 'Hund30390' => 'sun', 'Hund30392' => 'sun', 'Hund30419' => 'sun', 'Hund30965' => 'sun', 'Hund31335' => 'sun', 'Lalb_Chr00c21g0405751' => 'lal', 'Lalb_Chr00c24g0407071' => 'lal', 'Lalb_Chr03g0039341' => 'lal', 'Lalb_Chr11g0070091' => 'lal', 'Lalb_Chr11g0070101' => 'lal', 'Lalb_Chr11g0070921' => 'lal', 'Lalb_Chr13g0291611' => 'lal', 'Lalb_Chr18g0049321' => 'lal', 'Lalb_Chr19g0127771' => 'lal', 'Lalb_Chr23g0274251' => 'lal', 'Lj2C1237T35' => 'lonja', 'Lj2P1221T93' => 'lonja', 'Lj2P1230T111' => 'lonja', 'LjContig00315g0000313' => 'lja', 'LjContig00318g0015359' => 'lja', 'Lsat_1_v5_gn_0_38040' => 'lsa', 'Lsat_1_v5_gn_4_106021' => 'lsa', 'Lsat_1_v5_gn_4_178801' => 'lsa', 'Lsat_1_v5_gn_8_132861' => 'lsa', 'Lsat_1_v5_gn_8_92120' => 'lsa', 'Mapoly0052s0079' => 'mpo', 'Mapoly0118s0046' => 'mpo', 'MBI05_g05348_MAGBIO' => 'mbi', 'MBI16_g09478_MAGBIO' => 'mbi', 'MD06G1012400' => 'mdo', 'Medtr0002s0780' => 'mtr', 'Medtr0702s0030' => 'mtr', 'Medtr1779s0010' => 'mtr', 'Medtr2g087560' => 'mtr', 'Medtr4g034750' => 'mtr', 'Medtr8g081460' => 'mtr', 'MELO3C000108.2' => 'cme', 'MELO3C028575.2' => 'cme', 'Migut.D01329' => 'egut', 'Nitab4.5_0000216g0140' => 'nta', 'Nitab4.5_0000309g0180' => 'nta', 'Nitab4.5_0000309g0190' => 'nta', 'Nitab4.5_0000309g0210' => 'nta', 'Nitab4.5_0000309g0220' => 'nta', 'Nitab4.5_0000330g0070' => 'nta', 'Nitab4.5_0000334g0030' => 'nta', 'Nitab4.5_0000334g0040' => 'nta', 'Nitab4.5_0000451g0190' => 'nta', 'Nitab4.5_0001153g0110' => 'nta', 'Nitab4.5_0001761g0040' => 'nta', 'Nitab4.5_0002589g0040' => 'nta', 'Nitab4.5_0002616g0170' => 'nta', 'Nitab4.5_0007104g0030' => 'nta', 'Nitab4.5_0007876g0050' => 'nta', 'Nitab4.5_0007962g0010' => 'nta', 'Nitab4.5_0009561g0020' => 'nta', 'Nitab4.5_0009561g0030' => 'nta', 'Nitab4.5_0009703g0120' => 'nta', 'Nitab4.5_0010033g0070' => 'nta', 'Nitab4.5_0011784g0040' => 'nta', 'Nn002s41363' => 'nnu', 'Nn021s41520' => 'nnu', 'Nn070s42373' => 'nnu', 'Nn1g01958' => 'nnu', 'Nn1g10074' => 'nnu', 'Os11g0269100' => 'osa', 'Peaxi162Scf00084g00915' => 'pax', 'Peaxi162Scf00238g00149' => 'pax', 'Peaxi162Scf00360g00814' => 'pax', 'Peaxi162Scf00360g00815' => 'pax', 'Peaxi162Scf00934g00143' => 'pax', 'Peaxi162Scf01098g00013' => 'pax', 'PGR111G0010' => 'pgr', 'PGSC0003DMG400013869' => 'stu', 'PGSC0003DMG400030936' => 'stu', 'PGSC0003DMG400042640' => 'stu', 'Pp3c2_23477' => 'ppa', 'Pp3c2_23480' => 'ppa', 'Psat0s1446g0200' => 'psa', 'Psat0s406g0040' => 'psa', 'Psat1g091000' => 'psa', 'Psat3g190880' => 'psa', 'Psat5g096040' => 'psa', 'Psat6g191040' => 'psa', 'Psat7g012480' => 'psa', 'PSO541G5803' => 'pso', 'PSO548G0086' => 'pso', 'PSO675G5335' => 'pso', 'PSO675G5880' => 'pso', 'PSO675G6514' => 'pso', 'QL07p023375' => 'qlo', 'QL93p1043_0023' => 'qlo', 'RcHm_v2.0_Chr2g0118571' => 'rch', 'RcHm_v2.0_Chr5g0031171' => 'rch', 'RcHm_v2.0_MTg0498421' => 'rch', 'RhsimMtG0002600' => 'rsi', 'SabraMtG0007200' => 'sbr', 'SalBow1G3504' => 'sbo', 'SalBow1G4210' => 'sbo', 'SalBow6G6095' => 'sbo', 'Sc17g0003730' => 'sci', 'Sc25g0002060' => 'sci', 'Sed0005999' => 'sed', 'Sed0015467' => 'sed', 'SEGI_15837' => 'sgi', 'SEGI_15868' => 'sgi', 'SEGI_19238' => 'sgi', 'SEGI_40200' => 'sgi', 'SGA_v2.0_scaffold245G44435' => 'sas', 'SGA_v2.0_scaffold255G45472' => 'sas', 'SGA_v2.0_scaffold324G48665' => 'sas', 'SGA_v2.0_scaffold3325G54315' => 'sas', 'SGA_v2.0_scaffold339G49282' => 'sas', 'SHI01961' => 'shi', 'SHI01963' => 'shi', 'SHI01964' => 'shi', 'SHI07819' => 'shi', 'SHI11170' => 'shi', 'SHI11171' => 'shi', 'SHI20096' => 'shi', 'SHI29633' => 'shi', 'SMO059G0001' => 'smo', 'SMO086G0056' => 'smo', 'SMO172G0196' => 'smo', 'Solyc00g500032.1' => 'sly', 'Solyc00g500077.1' => 'sly', 'Solyc00g500100.1' => 'sly', 'Solyc00g500117.1' => 'sly', 'Solyc00g500154.1' => 'sly', 'Solyc00g500245.1' => 'sly', 'Solyc00g500274.1' => 'sly', 'Solyc00g500309.1' => 'sly', 'Solyc03g063770.3' => 'sly', 'Solyc05g045770.1' => 'sly', 'Solyc05g045780.1' => 'sly', 'Solyc05g045822.1' => 'sly', 'Solyc05g045824.1' => 'sly', 'Solyc05g045826.1' => 'sly', 'Solyc05g045828.1' => 'sly', 'Solyc05g045840.1' => 'sly', 'Solyc05g045920.1' => 'sly', 'Solyc06g008140.1' => 'sly', 'Solyc08g045870.3' => 'sly', 'Solyc08g074700.1' => 'sly', 'Solyc09g015850.4' => 'sly', 'Solyc09g015860.1' => 'sly', 'Solyc09g050065.1' => 'sly', 'Solyc10g006910.3' => 'sly', 'Solyc12g035815.1' => 'sly', 'Solyc12g035820.3' => 'sly', 'Solyc12g038985.1' => 'sly', 'Sopen05g027050' => 'spe', 'Sopen05g027070' => 'spe', 'Sopen08g010250' => 'spe', 'Sopen10g002820' => 'spe', 'Sp3g25720' => 'spa', 'TAR358G0001' => 'tar', 'TAR365G0637' => 'tar', 'TAR375G0860' => 'tar', 'Thhalv10001268m.g' => 'esa', 'Thhalv10018971m.g' => 'esa', 'TPR.G21771' => 'tpr', 'TPR.G26049' => 'tpr', 'unitig_87.g28029' => 'ugi', 'unitig_91.g26513' => 'ugi' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001987' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001987' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001987' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001987' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
<label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
<label>Source(s)</label>
<select class='form form-select' name='ontology_source_group' id='ontology_source_group'>
<?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001987', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '333', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A04p09400' => 'bna', 'A07p38510' => 'bna', 'Aa31csc822G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.831' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2082' => 'aag', 'Actinidia34925' => 'ach', 'Ah.01g011840' => 'amhyb', 'Ah.02g118900' => 'amhyb', 'Ah.06g195180' => 'amhyb', 'Ah.10g027330' => 'amhyb', 'Ah.10g027450' => 'amhyb', 'Ah.10g027970' => 'amhyb', 'Ah.10g028680' => 'amhyb', 'Ah.10g028690' => 'amhyb', 'Ah.10g028990' => 'amhyb', 'AL1G67310' => 'aly', 'AL2G20540' => 'aly', 'AL2G21740' => 'aly', 'AL4G23360' => 'aly', 'AL5G20250' => 'aly', 'Aqoxy4G01609' => 'aox', 'Aqoxy5G00594' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4JG1UT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A4IEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YIJR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8UR9GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5EGR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2JJBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K88Y93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L3L3JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MWRF4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T14CIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TY26DT' => 'arhy', 'AT2G28815' => 'ath', 'ATCG00790' => 'ath', 'ATMG00080' => 'ath', 'ATMG00090' => 'ath', 'ATR0424G001' => 'atr', 'ATR0620G114' => 'atr', 'ATR0661G567' => 'atr', 'Atru.chr11.441' => 'acertr', 'BcaB03g14981' => 'bca', 'BcaC08g46689' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00360' => 'bna', 'BolC6t39714H' => 'bol', 'BolSC28t60315H' => 'bol', 'BolSC28t60316H' => 'bol', 'BolSC28t60371H' => 'bol', 'BolSC29t60531H' => 'bol', 'BolSC29t60612H' => 'bol', 'BolSC29t60628H' => 'bol', 'BolSC35t60672H' => 'bol', 'BolSC35t60727H' => 'bol', 'BolSC49t61161H' => 'bol', 'BolSC56t61246H' => 'bol', 'BraA07t31411Z' => 'bra', 'BraSC159t45730Z' => 'bra', 'BraSC48t46240Z' => 'bra', 'BraSC48t46330Z' => 'bra', 'BraSC48t46331Z' => 'bra', 'BraSC54t46368Z' => 'bra', 'BraSC58t46443Z' => 'bra', 'C03p38120' => 'bna', 'C06p46690' => 'bna', 'CAN.G1202.8' => 'can', 'CAN.G1542.10' => 'can', 'CANSAT16G0046' => 'cansat', 'CARHR127990' => 'chi', 'CARHR282630' => 'chi', 'CARHR287450' => 'chi', 'CARHR288240' => 'chi', 'Carub.0004s0981' => 'cru', 'Ca_30750_v3' => 'car', 'CDE02G0251' => 'cde', 'CDE02G0755' => 'cde', 'Cfa023008' => 'cfa', 'Cfa025269' => 'cfa', 'Ciclev10004001m.g' => 'ccl', 'Ciclev10013231m.g' => 'ccl', 'Ciclev10021160m.g' => 'ccl', 'Ciclev10024383m.g' => 'ccl', 'CiPaw.01G253800' => 'cil', 'CiPaw.03G280800' => 'cil', 'ClCG00G004300' => 'cla', 'ClCG08G009700' => 'cla', 'ClCG08G015640' => 'cla', 'ClCG11G014310' => 'cla', 'Cpa.g.sc1367.1' => 'cpa', 'Cre06.g278224' => 'cre', 'CsaV3_UNG208600' => 'csa', 'DCAR_032447' => 'dca', 'DCAR_032448' => 'dca', 'DCAR_032523' => 'dca', 'Dinv06676' => 'din', 'Dinv35896' => 'din', 'ECA236G3336' => 'eca', 'ECA240G1514' => 'eca', 'EL10Ac1g01304' => 'bvu', 'EL10Ac4g10036' => 'bvu', 'EL10Ac5g11671' => 'bvu', 'EL10Ac5g12759' => 'bvu', 'EL10As12g24036' => 'bvu', 'Eucgr.A01256' => 'egr', 'Eucgr.H02719' => 'egr', 'Eucgr.J02744' => 'egr', 'FAN11G2273' => 'fan', 'FAN16G3148' => 'fan', 'FAN21G1218' => 'fan', 'FAN25G2706' => 'fan', 'FvH4_3g18440' => 'fve', 'Gohir.1Z049902' => 'ghi', 'Gohir.1Z049934' => 'ghi', 'Gohir.A03G162750' => 'ghi', 'Gohir.A05G144450' => 'ghi', 'Gohir.A05G396300' => 'ghi', 'Gohir.A12G024600' => 'ghi', 'Gohir.A12G178655' => 'ghi', 'Gohir.A13G113500' => 'ghi', 'Gohir.D01G102151' => 'ghi', 'Gohir.D01G121380' => 'ghi', 'Gohir.D01G157901' => 'ghi', 'Gohir.D08G014666' => 'ghi', 'Gohir.D09G095250' => 'ghi', 'Gohir.D12G072201' => 'ghi', 'Gorai.001G161500' => 'gra', 'Gorai.002G152200' => 'gra', 'Gorai.002G196000' => 'gra', 'Gorai.004G166700' => 'gra', 'Gorai.008G079300' => 'gra', 'HanXRQChr00c0349g0573951' => 'han', 'HanXRQChr00c0557g0575721' => 'han', 'HanXRQChr00c0593g0576391' => 'han', 'HanXRQChr01g0013341' => 'han', 'HanXRQChr01g0013351' => 'han', 'HanXRQChr01g0020191' => 'han', 'HanXRQChr04g0127461' => 'han', 'HanXRQChr05g0147721' => 'han', 'HanXRQChr05g0152551' => 'han', 'HanXRQChr06g0172541' => 'han', 'HanXRQChr10g0284411' => 'han', 'HanXRQChr10g0318031' => 'han', 'HanXRQChr11g0321121' => 'han', 'HanXRQChr11g0326991' => 'han', 'HanXRQChr11g0345301' => 'han', 'HanXRQChr12g0369881' => 'han', 'HanXRQChr14g0433081' => 'han', 'HanXRQChr15g0486801' => 'han', 'HanXRQChr16g0504311' => 'han', 'HanXRQChr16g0530211' => 'han', 'HanXRQChr17g0554541' => 'han', 'HanXRQCPg0580211' => 'han', 'HanXRQMTg0579601' => 'han', 'Haze_07953' => 'cav', 'Haze_16657' => 'cav', 'Hma1.2p1_0105F.1_g050680' => 'hma', 'Hund04058' => 'sun', 'Hund08207' => 'sun', 'Hund10099' => 'sun', 'Hund12658' => 'sun', 'Hund26845' => 'sun', 'Hund27846' => 'sun', 'Hund28045' => 'sun', 'Hund28418' => 'sun', 'Hund29038' => 'sun', 'Hund29684' => 'sun', 'Hund29734' => 'sun', 'Hund29823' => 'sun', 'Hund30343' => 'sun', 'Hund30390' => 'sun', 'Hund30392' => 'sun', 'Hund30419' => 'sun', 'Hund30965' => 'sun', 'Hund31335' => 'sun', 'Lalb_Chr00c21g0405751' => 'lal', 'Lalb_Chr00c24g0407071' => 'lal', 'Lalb_Chr03g0039341' => 'lal', 'Lalb_Chr11g0070091' => 'lal', 'Lalb_Chr11g0070101' => 'lal', 'Lalb_Chr11g0070921' => 'lal', 'Lalb_Chr13g0291611' => 'lal', 'Lalb_Chr18g0049321' => 'lal', 'Lalb_Chr19g0127771' => 'lal', 'Lalb_Chr23g0274251' => 'lal', 'Lj2C1237T35' => 'lonja', 'Lj2P1221T93' => 'lonja', 'Lj2P1230T111' => 'lonja', 'LjContig00315g0000313' => 'lja', 'LjContig00318g0015359' => 'lja', 'Lsat_1_v5_gn_0_38040' => 'lsa', 'Lsat_1_v5_gn_4_106021' => 'lsa', 'Lsat_1_v5_gn_4_178801' => 'lsa', 'Lsat_1_v5_gn_8_132861' => 'lsa', 'Lsat_1_v5_gn_8_92120' => 'lsa', 'Mapoly0052s0079' => 'mpo', 'Mapoly0118s0046' => 'mpo', 'MBI05_g05348_MAGBIO' => 'mbi', 'MBI16_g09478_MAGBIO' => 'mbi', 'MD06G1012400' => 'mdo', 'Medtr0002s0780' => 'mtr', 'Medtr0702s0030' => 'mtr', 'Medtr1779s0010' => 'mtr', 'Medtr2g087560' => 'mtr', 'Medtr4g034750' => 'mtr', 'Medtr8g081460' => 'mtr', 'MELO3C000108.2' => 'cme', 'MELO3C028575.2' => 'cme', 'Migut.D01329' => 'egut', 'Nitab4.5_0000216g0140' => 'nta', 'Nitab4.5_0000309g0180' => 'nta', 'Nitab4.5_0000309g0190' => 'nta', 'Nitab4.5_0000309g0210' => 'nta', 'Nitab4.5_0000309g0220' => 'nta', 'Nitab4.5_0000330g0070' => 'nta', 'Nitab4.5_0000334g0030' => 'nta', 'Nitab4.5_0000334g0040' => 'nta', 'Nitab4.5_0000451g0190' => 'nta', 'Nitab4.5_0001153g0110' => 'nta', 'Nitab4.5_0001761g0040' => 'nta', 'Nitab4.5_0002589g0040' => 'nta', 'Nitab4.5_0002616g0170' => 'nta', 'Nitab4.5_0007104g0030' => 'nta', 'Nitab4.5_0007876g0050' => 'nta', 'Nitab4.5_0007962g0010' => 'nta', 'Nitab4.5_0009561g0020' => 'nta', 'Nitab4.5_0009561g0030' => 'nta', 'Nitab4.5_0009703g0120' => 'nta', 'Nitab4.5_0010033g0070' => 'nta', 'Nitab4.5_0011784g0040' => 'nta', 'Nn002s41363' => 'nnu', 'Nn021s41520' => 'nnu', 'Nn070s42373' => 'nnu', 'Nn1g01958' => 'nnu', 'Nn1g10074' => 'nnu', 'Os11g0269100' => 'osa', 'Peaxi162Scf00084g00915' => 'pax', 'Peaxi162Scf00238g00149' => 'pax', 'Peaxi162Scf00360g00814' => 'pax', 'Peaxi162Scf00360g00815' => 'pax', 'Peaxi162Scf00934g00143' => 'pax', 'Peaxi162Scf01098g00013' => 'pax', 'PGR111G0010' => 'pgr', 'PGSC0003DMG400013869' => 'stu', 'PGSC0003DMG400030936' => 'stu', 'PGSC0003DMG400042640' => 'stu', 'Pp3c2_23477' => 'ppa', 'Pp3c2_23480' => 'ppa', 'Psat0s1446g0200' => 'psa', 'Psat0s406g0040' => 'psa', 'Psat1g091000' => 'psa', 'Psat3g190880' => 'psa', 'Psat5g096040' => 'psa', 'Psat6g191040' => 'psa', 'Psat7g012480' => 'psa', 'PSO541G5803' => 'pso', 'PSO548G0086' => 'pso', 'PSO675G5335' => 'pso', 'PSO675G5880' => 'pso', 'PSO675G6514' => 'pso', 'QL07p023375' => 'qlo', 'QL93p1043_0023' => 'qlo', 'RcHm_v2.0_Chr2g0118571' => 'rch', 'RcHm_v2.0_Chr5g0031171' => 'rch', 'RcHm_v2.0_MTg0498421' => 'rch', 'RhsimMtG0002600' => 'rsi', 'SabraMtG0007200' => 'sbr', 'SalBow1G3504' => 'sbo', 'SalBow1G4210' => 'sbo', 'SalBow6G6095' => 'sbo', 'Sc17g0003730' => 'sci', 'Sc25g0002060' => 'sci', 'Sed0005999' => 'sed', 'Sed0015467' => 'sed', 'SEGI_15837' => 'sgi', 'SEGI_15868' => 'sgi', 'SEGI_19238' => 'sgi', 'SEGI_40200' => 'sgi', 'SGA_v2.0_scaffold245G44435' => 'sas', 'SGA_v2.0_scaffold255G45472' => 'sas', 'SGA_v2.0_scaffold324G48665' => 'sas', 'SGA_v2.0_scaffold3325G54315' => 'sas', 'SGA_v2.0_scaffold339G49282' => 'sas', 'SHI01961' => 'shi', 'SHI01963' => 'shi', 'SHI01964' => 'shi', 'SHI07819' => 'shi', 'SHI11170' => 'shi', 'SHI11171' => 'shi', 'SHI20096' => 'shi', 'SHI29633' => 'shi', 'SMO059G0001' => 'smo', 'SMO086G0056' => 'smo', 'SMO172G0196' => 'smo', 'Solyc00g500032.1' => 'sly', 'Solyc00g500077.1' => 'sly', 'Solyc00g500100.1' => 'sly', 'Solyc00g500117.1' => 'sly', 'Solyc00g500154.1' => 'sly', 'Solyc00g500245.1' => 'sly', 'Solyc00g500274.1' => 'sly', 'Solyc00g500309.1' => 'sly', 'Solyc03g063770.3' => 'sly', 'Solyc05g045770.1' => 'sly', 'Solyc05g045780.1' => 'sly', 'Solyc05g045822.1' => 'sly', 'Solyc05g045824.1' => 'sly', 'Solyc05g045826.1' => 'sly', 'Solyc05g045828.1' => 'sly', 'Solyc05g045840.1' => 'sly', 'Solyc05g045920.1' => 'sly', 'Solyc06g008140.1' => 'sly', 'Solyc08g045870.3' => 'sly', 'Solyc08g074700.1' => 'sly', 'Solyc09g015850.4' => 'sly', 'Solyc09g015860.1' => 'sly', 'Solyc09g050065.1' => 'sly', 'Solyc10g006910.3' => 'sly', 'Solyc12g035815.1' => 'sly', 'Solyc12g035820.3' => 'sly', 'Solyc12g038985.1' => 'sly', 'Sopen05g027050' => 'spe', 'Sopen05g027070' => 'spe', 'Sopen08g010250' => 'spe', 'Sopen10g002820' => 'spe', 'Sp3g25720' => 'spa', 'TAR358G0001' => 'tar', 'TAR365G0637' => 'tar', 'TAR375G0860' => 'tar', 'Thhalv10001268m.g' => 'esa', 'Thhalv10018971m.g' => 'esa', 'TPR.G21771' => 'tpr', 'TPR.G26049' => 'tpr', 'unitig_87.g28029' => 'ugi', 'unitig_91.g26513' => 'ugi' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001987', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001987' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001987', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '333', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001987' ) ), 'genes' => array( 'A04p09400' => 'bna', 'A07p38510' => 'bna', 'Aa31csc822G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.831' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2082' => 'aag', 'Actinidia34925' => 'ach', 'Ah.01g011840' => 'amhyb', 'Ah.02g118900' => 'amhyb', 'Ah.06g195180' => 'amhyb', 'Ah.10g027330' => 'amhyb', 'Ah.10g027450' => 'amhyb', 'Ah.10g027970' => 'amhyb', 'Ah.10g028680' => 'amhyb', 'Ah.10g028690' => 'amhyb', 'Ah.10g028990' => 'amhyb', 'AL1G67310' => 'aly', 'AL2G20540' => 'aly', 'AL2G21740' => 'aly', 'AL4G23360' => 'aly', 'AL5G20250' => 'aly', 'Aqoxy4G01609' => 'aox', 'Aqoxy5G00594' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4JG1UT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A4IEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YIJR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8UR9GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5EGR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2JJBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K88Y93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L3L3JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MWRF4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T14CIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TY26DT' => 'arhy', 'AT2G28815' => 'ath', 'ATCG00790' => 'ath', 'ATMG00080' => 'ath', 'ATMG00090' => 'ath', 'ATR0424G001' => 'atr', 'ATR0620G114' => 'atr', 'ATR0661G567' => 'atr', 'Atru.chr11.441' => 'acertr', 'BcaB03g14981' => 'bca', 'BcaC08g46689' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00360' => 'bna', 'BolC6t39714H' => 'bol', 'BolSC28t60315H' => 'bol', 'BolSC28t60316H' => 'bol', 'BolSC28t60371H' => 'bol', 'BolSC29t60531H' => 'bol', 'BolSC29t60612H' => 'bol', 'BolSC29t60628H' => 'bol', 'BolSC35t60672H' => 'bol', 'BolSC35t60727H' => 'bol', 'BolSC49t61161H' => 'bol', 'BolSC56t61246H' => 'bol', 'BraA07t31411Z' => 'bra', 'BraSC159t45730Z' => 'bra', 'BraSC48t46240Z' => 'bra', 'BraSC48t46330Z' => 'bra', 'BraSC48t46331Z' => 'bra', 'BraSC54t46368Z' => 'bra', 'BraSC58t46443Z' => 'bra', 'C03p38120' => 'bna', 'C06p46690' => 'bna', 'CAN.G1202.8' => 'can', 'CAN.G1542.10' => 'can', 'CANSAT16G0046' => 'cansat', 'CARHR127990' => 'chi', 'CARHR282630' => 'chi', 'CARHR287450' => 'chi', 'CARHR288240' => 'chi', 'Carub.0004s0981' => 'cru', 'Ca_30750_v3' => 'car', 'CDE02G0251' => 'cde', 'CDE02G0755' => 'cde', 'Cfa023008' => 'cfa', 'Cfa025269' => 'cfa', 'Ciclev10004001m.g' => 'ccl', 'Ciclev10013231m.g' => 'ccl', 'Ciclev10021160m.g' => 'ccl', 'Ciclev10024383m.g' => 'ccl', 'CiPaw.01G253800' => 'cil', 'CiPaw.03G280800' => 'cil', 'ClCG00G004300' => 'cla', 'ClCG08G009700' => 'cla', 'ClCG08G015640' => 'cla', 'ClCG11G014310' => 'cla', 'Cpa.g.sc1367.1' => 'cpa', 'Cre06.g278224' => 'cre', 'CsaV3_UNG208600' => 'csa', 'DCAR_032447' => 'dca', 'DCAR_032448' => 'dca', 'DCAR_032523' => 'dca', 'Dinv06676' => 'din', 'Dinv35896' => 'din', 'ECA236G3336' => 'eca', 'ECA240G1514' => 'eca', 'EL10Ac1g01304' => 'bvu', 'EL10Ac4g10036' => 'bvu', 'EL10Ac5g11671' => 'bvu', 'EL10Ac5g12759' => 'bvu', 'EL10As12g24036' => 'bvu', 'Eucgr.A01256' => 'egr', 'Eucgr.H02719' => 'egr', 'Eucgr.J02744' => 'egr', 'FAN11G2273' => 'fan', 'FAN16G3148' => 'fan', 'FAN21G1218' => 'fan', 'FAN25G2706' => 'fan', 'FvH4_3g18440' => 'fve', 'Gohir.1Z049902' => 'ghi', 'Gohir.1Z049934' => 'ghi', 'Gohir.A03G162750' => 'ghi', 'Gohir.A05G144450' => 'ghi', 'Gohir.A05G396300' => 'ghi', 'Gohir.A12G024600' => 'ghi', 'Gohir.A12G178655' => 'ghi', 'Gohir.A13G113500' => 'ghi', 'Gohir.D01G102151' => 'ghi', 'Gohir.D01G121380' => 'ghi', 'Gohir.D01G157901' => 'ghi', 'Gohir.D08G014666' => 'ghi', 'Gohir.D09G095250' => 'ghi', 'Gohir.D12G072201' => 'ghi', 'Gorai.001G161500' => 'gra', 'Gorai.002G152200' => 'gra', 'Gorai.002G196000' => 'gra', 'Gorai.004G166700' => 'gra', 'Gorai.008G079300' => 'gra', 'HanXRQChr00c0349g0573951' => 'han', 'HanXRQChr00c0557g0575721' => 'han', 'HanXRQChr00c0593g0576391' => 'han', 'HanXRQChr01g0013341' => 'han', 'HanXRQChr01g0013351' => 'han', 'HanXRQChr01g0020191' => 'han', 'HanXRQChr04g0127461' => 'han', 'HanXRQChr05g0147721' => 'han', 'HanXRQChr05g0152551' => 'han', 'HanXRQChr06g0172541' => 'han', 'HanXRQChr10g0284411' => 'han', 'HanXRQChr10g0318031' => 'han', 'HanXRQChr11g0321121' => 'han', 'HanXRQChr11g0326991' => 'han', 'HanXRQChr11g0345301' => 'han', 'HanXRQChr12g0369881' => 'han', 'HanXRQChr14g0433081' => 'han', 'HanXRQChr15g0486801' => 'han', 'HanXRQChr16g0504311' => 'han', 'HanXRQChr16g0530211' => 'han', 'HanXRQChr17g0554541' => 'han', 'HanXRQCPg0580211' => 'han', 'HanXRQMTg0579601' => 'han', 'Haze_07953' => 'cav', 'Haze_16657' => 'cav', 'Hma1.2p1_0105F.1_g050680' => 'hma', 'Hund04058' => 'sun', 'Hund08207' => 'sun', 'Hund10099' => 'sun', 'Hund12658' => 'sun', 'Hund26845' => 'sun', 'Hund27846' => 'sun', 'Hund28045' => 'sun', 'Hund28418' => 'sun', 'Hund29038' => 'sun', 'Hund29684' => 'sun', 'Hund29734' => 'sun', 'Hund29823' => 'sun', 'Hund30343' => 'sun', 'Hund30390' => 'sun', 'Hund30392' => 'sun', 'Hund30419' => 'sun', 'Hund30965' => 'sun', 'Hund31335' => 'sun', 'Lalb_Chr00c21g0405751' => 'lal', 'Lalb_Chr00c24g0407071' => 'lal', 'Lalb_Chr03g0039341' => 'lal', 'Lalb_Chr11g0070091' => 'lal', 'Lalb_Chr11g0070101' => 'lal', 'Lalb_Chr11g0070921' => 'lal', 'Lalb_Chr13g0291611' => 'lal', 'Lalb_Chr18g0049321' => 'lal', 'Lalb_Chr19g0127771' => 'lal', 'Lalb_Chr23g0274251' => 'lal', 'Lj2C1237T35' => 'lonja', 'Lj2P1221T93' => 'lonja', 'Lj2P1230T111' => 'lonja', 'LjContig00315g0000313' => 'lja', 'LjContig00318g0015359' => 'lja', 'Lsat_1_v5_gn_0_38040' => 'lsa', 'Lsat_1_v5_gn_4_106021' => 'lsa', 'Lsat_1_v5_gn_4_178801' => 'lsa', 'Lsat_1_v5_gn_8_132861' => 'lsa', 'Lsat_1_v5_gn_8_92120' => 'lsa', 'Mapoly0052s0079' => 'mpo', 'Mapoly0118s0046' => 'mpo', 'MBI05_g05348_MAGBIO' => 'mbi', 'MBI16_g09478_MAGBIO' => 'mbi', 'MD06G1012400' => 'mdo', 'Medtr0002s0780' => 'mtr', 'Medtr0702s0030' => 'mtr', 'Medtr1779s0010' => 'mtr', 'Medtr2g087560' => 'mtr', 'Medtr4g034750' => 'mtr', 'Medtr8g081460' => 'mtr', 'MELO3C000108.2' => 'cme', 'MELO3C028575.2' => 'cme', 'Migut.D01329' => 'egut', 'Nitab4.5_0000216g0140' => 'nta', 'Nitab4.5_0000309g0180' => 'nta', 'Nitab4.5_0000309g0190' => 'nta', 'Nitab4.5_0000309g0210' => 'nta', 'Nitab4.5_0000309g0220' => 'nta', 'Nitab4.5_0000330g0070' => 'nta', 'Nitab4.5_0000334g0030' => 'nta', 'Nitab4.5_0000334g0040' => 'nta', 'Nitab4.5_0000451g0190' => 'nta', 'Nitab4.5_0001153g0110' => 'nta', 'Nitab4.5_0001761g0040' => 'nta', 'Nitab4.5_0002589g0040' => 'nta', 'Nitab4.5_0002616g0170' => 'nta', 'Nitab4.5_0007104g0030' => 'nta', 'Nitab4.5_0007876g0050' => 'nta', 'Nitab4.5_0007962g0010' => 'nta', 'Nitab4.5_0009561g0020' => 'nta', 'Nitab4.5_0009561g0030' => 'nta', 'Nitab4.5_0009703g0120' => 'nta', 'Nitab4.5_0010033g0070' => 'nta', 'Nitab4.5_0011784g0040' => 'nta', 'Nn002s41363' => 'nnu', 'Nn021s41520' => 'nnu', 'Nn070s42373' => 'nnu', 'Nn1g01958' => 'nnu', 'Nn1g10074' => 'nnu', 'Os11g0269100' => 'osa', 'Peaxi162Scf00084g00915' => 'pax', 'Peaxi162Scf00238g00149' => 'pax', 'Peaxi162Scf00360g00814' => 'pax', 'Peaxi162Scf00360g00815' => 'pax', 'Peaxi162Scf00934g00143' => 'pax', 'Peaxi162Scf01098g00013' => 'pax', 'PGR111G0010' => 'pgr', 'PGSC0003DMG400013869' => 'stu', 'PGSC0003DMG400030936' => 'stu', 'PGSC0003DMG400042640' => 'stu', 'Pp3c2_23477' => 'ppa', 'Pp3c2_23480' => 'ppa', 'Psat0s1446g0200' => 'psa', 'Psat0s406g0040' => 'psa', 'Psat1g091000' => 'psa', 'Psat3g190880' => 'psa', 'Psat5g096040' => 'psa', 'Psat6g191040' => 'psa', 'Psat7g012480' => 'psa', 'PSO541G5803' => 'pso', 'PSO548G0086' => 'pso', 'PSO675G5335' => 'pso', 'PSO675G5880' => 'pso', 'PSO675G6514' => 'pso', 'QL07p023375' => 'qlo', 'QL93p1043_0023' => 'qlo', 'RcHm_v2.0_Chr2g0118571' => 'rch', 'RcHm_v2.0_Chr5g0031171' => 'rch', 'RcHm_v2.0_MTg0498421' => 'rch', 'RhsimMtG0002600' => 'rsi', 'SabraMtG0007200' => 'sbr', 'SalBow1G3504' => 'sbo', 'SalBow1G4210' => 'sbo', 'SalBow6G6095' => 'sbo', 'Sc17g0003730' => 'sci', 'Sc25g0002060' => 'sci', 'Sed0005999' => 'sed', 'Sed0015467' => 'sed', 'SEGI_15837' => 'sgi', 'SEGI_15868' => 'sgi', 'SEGI_19238' => 'sgi', 'SEGI_40200' => 'sgi', 'SGA_v2.0_scaffold245G44435' => 'sas', 'SGA_v2.0_scaffold255G45472' => 'sas', 'SGA_v2.0_scaffold324G48665' => 'sas', 'SGA_v2.0_scaffold3325G54315' => 'sas', 'SGA_v2.0_scaffold339G49282' => 'sas', 'SHI01961' => 'shi', 'SHI01963' => 'shi', 'SHI01964' => 'shi', 'SHI07819' => 'shi', 'SHI11170' => 'shi', 'SHI11171' => 'shi', 'SHI20096' => 'shi', 'SHI29633' => 'shi', 'SMO059G0001' => 'smo', 'SMO086G0056' => 'smo', 'SMO172G0196' => 'smo', 'Solyc00g500032.1' => 'sly', 'Solyc00g500077.1' => 'sly', 'Solyc00g500100.1' => 'sly', 'Solyc00g500117.1' => 'sly', 'Solyc00g500154.1' => 'sly', 'Solyc00g500245.1' => 'sly', 'Solyc00g500274.1' => 'sly', 'Solyc00g500309.1' => 'sly', 'Solyc03g063770.3' => 'sly', 'Solyc05g045770.1' => 'sly', 'Solyc05g045780.1' => 'sly', 'Solyc05g045822.1' => 'sly', 'Solyc05g045824.1' => 'sly', 'Solyc05g045826.1' => 'sly', 'Solyc05g045828.1' => 'sly', 'Solyc05g045840.1' => 'sly', 'Solyc05g045920.1' => 'sly', 'Solyc06g008140.1' => 'sly', 'Solyc08g045870.3' => 'sly', 'Solyc08g074700.1' => 'sly', 'Solyc09g015850.4' => 'sly', 'Solyc09g015860.1' => 'sly', 'Solyc09g050065.1' => 'sly', 'Solyc10g006910.3' => 'sly', 'Solyc12g035815.1' => 'sly', 'Solyc12g035820.3' => 'sly', 'Solyc12g038985.1' => 'sly', 'Sopen05g027050' => 'spe', 'Sopen05g027070' => 'spe', 'Sopen08g010250' => 'spe', 'Sopen10g002820' => 'spe', 'Sp3g25720' => 'spa', 'TAR358G0001' => 'tar', 'TAR365G0637' => 'tar', 'TAR375G0860' => 'tar', 'Thhalv10001268m.g' => 'esa', 'Thhalv10018971m.g' => 'esa', 'TPR.G21771' => 'tpr', 'TPR.G26049' => 'tpr', 'unitig_87.g28029' => 'ugi', 'unitig_91.g26513' => 'ugi' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001987' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001987' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001987' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001987' )
include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Notice (8): Trying to access array offset on value of type null [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001987', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '333', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A04p09400' => 'bna', 'A07p38510' => 'bna', 'Aa31csc822G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.831' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2082' => 'aag', 'Actinidia34925' => 'ach', 'Ah.01g011840' => 'amhyb', 'Ah.02g118900' => 'amhyb', 'Ah.06g195180' => 'amhyb', 'Ah.10g027330' => 'amhyb', 'Ah.10g027450' => 'amhyb', 'Ah.10g027970' => 'amhyb', 'Ah.10g028680' => 'amhyb', 'Ah.10g028690' => 'amhyb', 'Ah.10g028990' => 'amhyb', 'AL1G67310' => 'aly', 'AL2G20540' => 'aly', 'AL2G21740' => 'aly', 'AL4G23360' => 'aly', 'AL5G20250' => 'aly', 'Aqoxy4G01609' => 'aox', 'Aqoxy5G00594' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4JG1UT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A4IEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YIJR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8UR9GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5EGR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2JJBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K88Y93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L3L3JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MWRF4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T14CIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TY26DT' => 'arhy', 'AT2G28815' => 'ath', 'ATCG00790' => 'ath', 'ATMG00080' => 'ath', 'ATMG00090' => 'ath', 'ATR0424G001' => 'atr', 'ATR0620G114' => 'atr', 'ATR0661G567' => 'atr', 'Atru.chr11.441' => 'acertr', 'BcaB03g14981' => 'bca', 'BcaC08g46689' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00360' => 'bna', 'BolC6t39714H' => 'bol', 'BolSC28t60315H' => 'bol', 'BolSC28t60316H' => 'bol', 'BolSC28t60371H' => 'bol', 'BolSC29t60531H' => 'bol', 'BolSC29t60612H' => 'bol', 'BolSC29t60628H' => 'bol', 'BolSC35t60672H' => 'bol', 'BolSC35t60727H' => 'bol', 'BolSC49t61161H' => 'bol', 'BolSC56t61246H' => 'bol', 'BraA07t31411Z' => 'bra', 'BraSC159t45730Z' => 'bra', 'BraSC48t46240Z' => 'bra', 'BraSC48t46330Z' => 'bra', 'BraSC48t46331Z' => 'bra', 'BraSC54t46368Z' => 'bra', 'BraSC58t46443Z' => 'bra', 'C03p38120' => 'bna', 'C06p46690' => 'bna', 'CAN.G1202.8' => 'can', 'CAN.G1542.10' => 'can', 'CANSAT16G0046' => 'cansat', 'CARHR127990' => 'chi', 'CARHR282630' => 'chi', 'CARHR287450' => 'chi', 'CARHR288240' => 'chi', 'Carub.0004s0981' => 'cru', 'Ca_30750_v3' => 'car', 'CDE02G0251' => 'cde', 'CDE02G0755' => 'cde', 'Cfa023008' => 'cfa', 'Cfa025269' => 'cfa', 'Ciclev10004001m.g' => 'ccl', 'Ciclev10013231m.g' => 'ccl', 'Ciclev10021160m.g' => 'ccl', 'Ciclev10024383m.g' => 'ccl', 'CiPaw.01G253800' => 'cil', 'CiPaw.03G280800' => 'cil', 'ClCG00G004300' => 'cla', 'ClCG08G009700' => 'cla', 'ClCG08G015640' => 'cla', 'ClCG11G014310' => 'cla', 'Cpa.g.sc1367.1' => 'cpa', 'Cre06.g278224' => 'cre', 'CsaV3_UNG208600' => 'csa', 'DCAR_032447' => 'dca', 'DCAR_032448' => 'dca', 'DCAR_032523' => 'dca', 'Dinv06676' => 'din', 'Dinv35896' => 'din', 'ECA236G3336' => 'eca', 'ECA240G1514' => 'eca', 'EL10Ac1g01304' => 'bvu', 'EL10Ac4g10036' => 'bvu', 'EL10Ac5g11671' => 'bvu', 'EL10Ac5g12759' => 'bvu', 'EL10As12g24036' => 'bvu', 'Eucgr.A01256' => 'egr', 'Eucgr.H02719' => 'egr', 'Eucgr.J02744' => 'egr', 'FAN11G2273' => 'fan', 'FAN16G3148' => 'fan', 'FAN21G1218' => 'fan', 'FAN25G2706' => 'fan', 'FvH4_3g18440' => 'fve', 'Gohir.1Z049902' => 'ghi', 'Gohir.1Z049934' => 'ghi', 'Gohir.A03G162750' => 'ghi', 'Gohir.A05G144450' => 'ghi', 'Gohir.A05G396300' => 'ghi', 'Gohir.A12G024600' => 'ghi', 'Gohir.A12G178655' => 'ghi', 'Gohir.A13G113500' => 'ghi', 'Gohir.D01G102151' => 'ghi', 'Gohir.D01G121380' => 'ghi', 'Gohir.D01G157901' => 'ghi', 'Gohir.D08G014666' => 'ghi', 'Gohir.D09G095250' => 'ghi', 'Gohir.D12G072201' => 'ghi', 'Gorai.001G161500' => 'gra', 'Gorai.002G152200' => 'gra', 'Gorai.002G196000' => 'gra', 'Gorai.004G166700' => 'gra', 'Gorai.008G079300' => 'gra', 'HanXRQChr00c0349g0573951' => 'han', 'HanXRQChr00c0557g0575721' => 'han', 'HanXRQChr00c0593g0576391' => 'han', 'HanXRQChr01g0013341' => 'han', 'HanXRQChr01g0013351' => 'han', 'HanXRQChr01g0020191' => 'han', 'HanXRQChr04g0127461' => 'han', 'HanXRQChr05g0147721' => 'han', 'HanXRQChr05g0152551' => 'han', 'HanXRQChr06g0172541' => 'han', 'HanXRQChr10g0284411' => 'han', 'HanXRQChr10g0318031' => 'han', 'HanXRQChr11g0321121' => 'han', 'HanXRQChr11g0326991' => 'han', 'HanXRQChr11g0345301' => 'han', 'HanXRQChr12g0369881' => 'han', 'HanXRQChr14g0433081' => 'han', 'HanXRQChr15g0486801' => 'han', 'HanXRQChr16g0504311' => 'han', 'HanXRQChr16g0530211' => 'han', 'HanXRQChr17g0554541' => 'han', 'HanXRQCPg0580211' => 'han', 'HanXRQMTg0579601' => 'han', 'Haze_07953' => 'cav', 'Haze_16657' => 'cav', 'Hma1.2p1_0105F.1_g050680' => 'hma', 'Hund04058' => 'sun', 'Hund08207' => 'sun', 'Hund10099' => 'sun', 'Hund12658' => 'sun', 'Hund26845' => 'sun', 'Hund27846' => 'sun', 'Hund28045' => 'sun', 'Hund28418' => 'sun', 'Hund29038' => 'sun', 'Hund29684' => 'sun', 'Hund29734' => 'sun', 'Hund29823' => 'sun', 'Hund30343' => 'sun', 'Hund30390' => 'sun', 'Hund30392' => 'sun', 'Hund30419' => 'sun', 'Hund30965' => 'sun', 'Hund31335' => 'sun', 'Lalb_Chr00c21g0405751' => 'lal', 'Lalb_Chr00c24g0407071' => 'lal', 'Lalb_Chr03g0039341' => 'lal', 'Lalb_Chr11g0070091' => 'lal', 'Lalb_Chr11g0070101' => 'lal', 'Lalb_Chr11g0070921' => 'lal', 'Lalb_Chr13g0291611' => 'lal', 'Lalb_Chr18g0049321' => 'lal', 'Lalb_Chr19g0127771' => 'lal', 'Lalb_Chr23g0274251' => 'lal', 'Lj2C1237T35' => 'lonja', 'Lj2P1221T93' => 'lonja', 'Lj2P1230T111' => 'lonja', 'LjContig00315g0000313' => 'lja', 'LjContig00318g0015359' => 'lja', 'Lsat_1_v5_gn_0_38040' => 'lsa', 'Lsat_1_v5_gn_4_106021' => 'lsa', 'Lsat_1_v5_gn_4_178801' => 'lsa', 'Lsat_1_v5_gn_8_132861' => 'lsa', 'Lsat_1_v5_gn_8_92120' => 'lsa', 'Mapoly0052s0079' => 'mpo', 'Mapoly0118s0046' => 'mpo', 'MBI05_g05348_MAGBIO' => 'mbi', 'MBI16_g09478_MAGBIO' => 'mbi', 'MD06G1012400' => 'mdo', 'Medtr0002s0780' => 'mtr', 'Medtr0702s0030' => 'mtr', 'Medtr1779s0010' => 'mtr', 'Medtr2g087560' => 'mtr', 'Medtr4g034750' => 'mtr', 'Medtr8g081460' => 'mtr', 'MELO3C000108.2' => 'cme', 'MELO3C028575.2' => 'cme', 'Migut.D01329' => 'egut', 'Nitab4.5_0000216g0140' => 'nta', 'Nitab4.5_0000309g0180' => 'nta', 'Nitab4.5_0000309g0190' => 'nta', 'Nitab4.5_0000309g0210' => 'nta', 'Nitab4.5_0000309g0220' => 'nta', 'Nitab4.5_0000330g0070' => 'nta', 'Nitab4.5_0000334g0030' => 'nta', 'Nitab4.5_0000334g0040' => 'nta', 'Nitab4.5_0000451g0190' => 'nta', 'Nitab4.5_0001153g0110' => 'nta', 'Nitab4.5_0001761g0040' => 'nta', 'Nitab4.5_0002589g0040' => 'nta', 'Nitab4.5_0002616g0170' => 'nta', 'Nitab4.5_0007104g0030' => 'nta', 'Nitab4.5_0007876g0050' => 'nta', 'Nitab4.5_0007962g0010' => 'nta', 'Nitab4.5_0009561g0020' => 'nta', 'Nitab4.5_0009561g0030' => 'nta', 'Nitab4.5_0009703g0120' => 'nta', 'Nitab4.5_0010033g0070' => 'nta', 'Nitab4.5_0011784g0040' => 'nta', 'Nn002s41363' => 'nnu', 'Nn021s41520' => 'nnu', 'Nn070s42373' => 'nnu', 'Nn1g01958' => 'nnu', 'Nn1g10074' => 'nnu', 'Os11g0269100' => 'osa', 'Peaxi162Scf00084g00915' => 'pax', 'Peaxi162Scf00238g00149' => 'pax', 'Peaxi162Scf00360g00814' => 'pax', 'Peaxi162Scf00360g00815' => 'pax', 'Peaxi162Scf00934g00143' => 'pax', 'Peaxi162Scf01098g00013' => 'pax', 'PGR111G0010' => 'pgr', 'PGSC0003DMG400013869' => 'stu', 'PGSC0003DMG400030936' => 'stu', 'PGSC0003DMG400042640' => 'stu', 'Pp3c2_23477' => 'ppa', 'Pp3c2_23480' => 'ppa', 'Psat0s1446g0200' => 'psa', 'Psat0s406g0040' => 'psa', 'Psat1g091000' => 'psa', 'Psat3g190880' => 'psa', 'Psat5g096040' => 'psa', 'Psat6g191040' => 'psa', 'Psat7g012480' => 'psa', 'PSO541G5803' => 'pso', 'PSO548G0086' => 'pso', 'PSO675G5335' => 'pso', 'PSO675G5880' => 'pso', 'PSO675G6514' => 'pso', 'QL07p023375' => 'qlo', 'QL93p1043_0023' => 'qlo', 'RcHm_v2.0_Chr2g0118571' => 'rch', 'RcHm_v2.0_Chr5g0031171' => 'rch', 'RcHm_v2.0_MTg0498421' => 'rch', 'RhsimMtG0002600' => 'rsi', 'SabraMtG0007200' => 'sbr', 'SalBow1G3504' => 'sbo', 'SalBow1G4210' => 'sbo', 'SalBow6G6095' => 'sbo', 'Sc17g0003730' => 'sci', 'Sc25g0002060' => 'sci', 'Sed0005999' => 'sed', 'Sed0015467' => 'sed', 'SEGI_15837' => 'sgi', 'SEGI_15868' => 'sgi', 'SEGI_19238' => 'sgi', 'SEGI_40200' => 'sgi', 'SGA_v2.0_scaffold245G44435' => 'sas', 'SGA_v2.0_scaffold255G45472' => 'sas', 'SGA_v2.0_scaffold324G48665' => 'sas', 'SGA_v2.0_scaffold3325G54315' => 'sas', 'SGA_v2.0_scaffold339G49282' => 'sas', 'SHI01961' => 'shi', 'SHI01963' => 'shi', 'SHI01964' => 'shi', 'SHI07819' => 'shi', 'SHI11170' => 'shi', 'SHI11171' => 'shi', 'SHI20096' => 'shi', 'SHI29633' => 'shi', 'SMO059G0001' => 'smo', 'SMO086G0056' => 'smo', 'SMO172G0196' => 'smo', 'Solyc00g500032.1' => 'sly', 'Solyc00g500077.1' => 'sly', 'Solyc00g500100.1' => 'sly', 'Solyc00g500117.1' => 'sly', 'Solyc00g500154.1' => 'sly', 'Solyc00g500245.1' => 'sly', 'Solyc00g500274.1' => 'sly', 'Solyc00g500309.1' => 'sly', 'Solyc03g063770.3' => 'sly', 'Solyc05g045770.1' => 'sly', 'Solyc05g045780.1' => 'sly', 'Solyc05g045822.1' => 'sly', 'Solyc05g045824.1' => 'sly', 'Solyc05g045826.1' => 'sly', 'Solyc05g045828.1' => 'sly', 'Solyc05g045840.1' => 'sly', 'Solyc05g045920.1' => 'sly', 'Solyc06g008140.1' => 'sly', 'Solyc08g045870.3' => 'sly', 'Solyc08g074700.1' => 'sly', 'Solyc09g015850.4' => 'sly', 'Solyc09g015860.1' => 'sly', 'Solyc09g050065.1' => 'sly', 'Solyc10g006910.3' => 'sly', 'Solyc12g035815.1' => 'sly', 'Solyc12g035820.3' => 'sly', 'Solyc12g038985.1' => 'sly', 'Sopen05g027050' => 'spe', 'Sopen05g027070' => 'spe', 'Sopen08g010250' => 'spe', 'Sopen10g002820' => 'spe', 'Sp3g25720' => 'spa', 'TAR358G0001' => 'tar', 'TAR365G0637' => 'tar', 'TAR375G0860' => 'tar', 'Thhalv10001268m.g' => 'esa', 'Thhalv10018971m.g' => 'esa', 'TPR.G21771' => 'tpr', 'TPR.G26049' => 'tpr', 'unitig_87.g28029' => 'ugi', 'unitig_91.g26513' => 'ugi' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001987', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001987' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001987', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '333', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001987' ) ), 'genes' => array( 'A04p09400' => 'bna', 'A07p38510' => 'bna', 'Aa31csc822G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.831' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2082' => 'aag', 'Actinidia34925' => 'ach', 'Ah.01g011840' => 'amhyb', 'Ah.02g118900' => 'amhyb', 'Ah.06g195180' => 'amhyb', 'Ah.10g027330' => 'amhyb', 'Ah.10g027450' => 'amhyb', 'Ah.10g027970' => 'amhyb', 'Ah.10g028680' => 'amhyb', 'Ah.10g028690' => 'amhyb', 'Ah.10g028990' => 'amhyb', 'AL1G67310' => 'aly', 'AL2G20540' => 'aly', 'AL2G21740' => 'aly', 'AL4G23360' => 'aly', 'AL5G20250' => 'aly', 'Aqoxy4G01609' => 'aox', 'Aqoxy5G00594' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4JG1UT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A4IEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YIJR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8UR9GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5EGR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2JJBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K88Y93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L3L3JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MWRF4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T14CIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TY26DT' => 'arhy', 'AT2G28815' => 'ath', 'ATCG00790' => 'ath', 'ATMG00080' => 'ath', 'ATMG00090' => 'ath', 'ATR0424G001' => 'atr', 'ATR0620G114' => 'atr', 'ATR0661G567' => 'atr', 'Atru.chr11.441' => 'acertr', 'BcaB03g14981' => 'bca', 'BcaC08g46689' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00360' => 'bna', 'BolC6t39714H' => 'bol', 'BolSC28t60315H' => 'bol', 'BolSC28t60316H' => 'bol', 'BolSC28t60371H' => 'bol', 'BolSC29t60531H' => 'bol', 'BolSC29t60612H' => 'bol', 'BolSC29t60628H' => 'bol', 'BolSC35t60672H' => 'bol', 'BolSC35t60727H' => 'bol', 'BolSC49t61161H' => 'bol', 'BolSC56t61246H' => 'bol', 'BraA07t31411Z' => 'bra', 'BraSC159t45730Z' => 'bra', 'BraSC48t46240Z' => 'bra', 'BraSC48t46330Z' => 'bra', 'BraSC48t46331Z' => 'bra', 'BraSC54t46368Z' => 'bra', 'BraSC58t46443Z' => 'bra', 'C03p38120' => 'bna', 'C06p46690' => 'bna', 'CAN.G1202.8' => 'can', 'CAN.G1542.10' => 'can', 'CANSAT16G0046' => 'cansat', 'CARHR127990' => 'chi', 'CARHR282630' => 'chi', 'CARHR287450' => 'chi', 'CARHR288240' => 'chi', 'Carub.0004s0981' => 'cru', 'Ca_30750_v3' => 'car', 'CDE02G0251' => 'cde', 'CDE02G0755' => 'cde', 'Cfa023008' => 'cfa', 'Cfa025269' => 'cfa', 'Ciclev10004001m.g' => 'ccl', 'Ciclev10013231m.g' => 'ccl', 'Ciclev10021160m.g' => 'ccl', 'Ciclev10024383m.g' => 'ccl', 'CiPaw.01G253800' => 'cil', 'CiPaw.03G280800' => 'cil', 'ClCG00G004300' => 'cla', 'ClCG08G009700' => 'cla', 'ClCG08G015640' => 'cla', 'ClCG11G014310' => 'cla', 'Cpa.g.sc1367.1' => 'cpa', 'Cre06.g278224' => 'cre', 'CsaV3_UNG208600' => 'csa', 'DCAR_032447' => 'dca', 'DCAR_032448' => 'dca', 'DCAR_032523' => 'dca', 'Dinv06676' => 'din', 'Dinv35896' => 'din', 'ECA236G3336' => 'eca', 'ECA240G1514' => 'eca', 'EL10Ac1g01304' => 'bvu', 'EL10Ac4g10036' => 'bvu', 'EL10Ac5g11671' => 'bvu', 'EL10Ac5g12759' => 'bvu', 'EL10As12g24036' => 'bvu', 'Eucgr.A01256' => 'egr', 'Eucgr.H02719' => 'egr', 'Eucgr.J02744' => 'egr', 'FAN11G2273' => 'fan', 'FAN16G3148' => 'fan', 'FAN21G1218' => 'fan', 'FAN25G2706' => 'fan', 'FvH4_3g18440' => 'fve', 'Gohir.1Z049902' => 'ghi', 'Gohir.1Z049934' => 'ghi', 'Gohir.A03G162750' => 'ghi', 'Gohir.A05G144450' => 'ghi', 'Gohir.A05G396300' => 'ghi', 'Gohir.A12G024600' => 'ghi', 'Gohir.A12G178655' => 'ghi', 'Gohir.A13G113500' => 'ghi', 'Gohir.D01G102151' => 'ghi', 'Gohir.D01G121380' => 'ghi', 'Gohir.D01G157901' => 'ghi', 'Gohir.D08G014666' => 'ghi', 'Gohir.D09G095250' => 'ghi', 'Gohir.D12G072201' => 'ghi', 'Gorai.001G161500' => 'gra', 'Gorai.002G152200' => 'gra', 'Gorai.002G196000' => 'gra', 'Gorai.004G166700' => 'gra', 'Gorai.008G079300' => 'gra', 'HanXRQChr00c0349g0573951' => 'han', 'HanXRQChr00c0557g0575721' => 'han', 'HanXRQChr00c0593g0576391' => 'han', 'HanXRQChr01g0013341' => 'han', 'HanXRQChr01g0013351' => 'han', 'HanXRQChr01g0020191' => 'han', 'HanXRQChr04g0127461' => 'han', 'HanXRQChr05g0147721' => 'han', 'HanXRQChr05g0152551' => 'han', 'HanXRQChr06g0172541' => 'han', 'HanXRQChr10g0284411' => 'han', 'HanXRQChr10g0318031' => 'han', 'HanXRQChr11g0321121' => 'han', 'HanXRQChr11g0326991' => 'han', 'HanXRQChr11g0345301' => 'han', 'HanXRQChr12g0369881' => 'han', 'HanXRQChr14g0433081' => 'han', 'HanXRQChr15g0486801' => 'han', 'HanXRQChr16g0504311' => 'han', 'HanXRQChr16g0530211' => 'han', 'HanXRQChr17g0554541' => 'han', 'HanXRQCPg0580211' => 'han', 'HanXRQMTg0579601' => 'han', 'Haze_07953' => 'cav', 'Haze_16657' => 'cav', 'Hma1.2p1_0105F.1_g050680' => 'hma', 'Hund04058' => 'sun', 'Hund08207' => 'sun', 'Hund10099' => 'sun', 'Hund12658' => 'sun', 'Hund26845' => 'sun', 'Hund27846' => 'sun', 'Hund28045' => 'sun', 'Hund28418' => 'sun', 'Hund29038' => 'sun', 'Hund29684' => 'sun', 'Hund29734' => 'sun', 'Hund29823' => 'sun', 'Hund30343' => 'sun', 'Hund30390' => 'sun', 'Hund30392' => 'sun', 'Hund30419' => 'sun', 'Hund30965' => 'sun', 'Hund31335' => 'sun', 'Lalb_Chr00c21g0405751' => 'lal', 'Lalb_Chr00c24g0407071' => 'lal', 'Lalb_Chr03g0039341' => 'lal', 'Lalb_Chr11g0070091' => 'lal', 'Lalb_Chr11g0070101' => 'lal', 'Lalb_Chr11g0070921' => 'lal', 'Lalb_Chr13g0291611' => 'lal', 'Lalb_Chr18g0049321' => 'lal', 'Lalb_Chr19g0127771' => 'lal', 'Lalb_Chr23g0274251' => 'lal', 'Lj2C1237T35' => 'lonja', 'Lj2P1221T93' => 'lonja', 'Lj2P1230T111' => 'lonja', 'LjContig00315g0000313' => 'lja', 'LjContig00318g0015359' => 'lja', 'Lsat_1_v5_gn_0_38040' => 'lsa', 'Lsat_1_v5_gn_4_106021' => 'lsa', 'Lsat_1_v5_gn_4_178801' => 'lsa', 'Lsat_1_v5_gn_8_132861' => 'lsa', 'Lsat_1_v5_gn_8_92120' => 'lsa', 'Mapoly0052s0079' => 'mpo', 'Mapoly0118s0046' => 'mpo', 'MBI05_g05348_MAGBIO' => 'mbi', 'MBI16_g09478_MAGBIO' => 'mbi', 'MD06G1012400' => 'mdo', 'Medtr0002s0780' => 'mtr', 'Medtr0702s0030' => 'mtr', 'Medtr1779s0010' => 'mtr', 'Medtr2g087560' => 'mtr', 'Medtr4g034750' => 'mtr', 'Medtr8g081460' => 'mtr', 'MELO3C000108.2' => 'cme', 'MELO3C028575.2' => 'cme', 'Migut.D01329' => 'egut', 'Nitab4.5_0000216g0140' => 'nta', 'Nitab4.5_0000309g0180' => 'nta', 'Nitab4.5_0000309g0190' => 'nta', 'Nitab4.5_0000309g0210' => 'nta', 'Nitab4.5_0000309g0220' => 'nta', 'Nitab4.5_0000330g0070' => 'nta', 'Nitab4.5_0000334g0030' => 'nta', 'Nitab4.5_0000334g0040' => 'nta', 'Nitab4.5_0000451g0190' => 'nta', 'Nitab4.5_0001153g0110' => 'nta', 'Nitab4.5_0001761g0040' => 'nta', 'Nitab4.5_0002589g0040' => 'nta', 'Nitab4.5_0002616g0170' => 'nta', 'Nitab4.5_0007104g0030' => 'nta', 'Nitab4.5_0007876g0050' => 'nta', 'Nitab4.5_0007962g0010' => 'nta', 'Nitab4.5_0009561g0020' => 'nta', 'Nitab4.5_0009561g0030' => 'nta', 'Nitab4.5_0009703g0120' => 'nta', 'Nitab4.5_0010033g0070' => 'nta', 'Nitab4.5_0011784g0040' => 'nta', 'Nn002s41363' => 'nnu', 'Nn021s41520' => 'nnu', 'Nn070s42373' => 'nnu', 'Nn1g01958' => 'nnu', 'Nn1g10074' => 'nnu', 'Os11g0269100' => 'osa', 'Peaxi162Scf00084g00915' => 'pax', 'Peaxi162Scf00238g00149' => 'pax', 'Peaxi162Scf00360g00814' => 'pax', 'Peaxi162Scf00360g00815' => 'pax', 'Peaxi162Scf00934g00143' => 'pax', 'Peaxi162Scf01098g00013' => 'pax', 'PGR111G0010' => 'pgr', 'PGSC0003DMG400013869' => 'stu', 'PGSC0003DMG400030936' => 'stu', 'PGSC0003DMG400042640' => 'stu', 'Pp3c2_23477' => 'ppa', 'Pp3c2_23480' => 'ppa', 'Psat0s1446g0200' => 'psa', 'Psat0s406g0040' => 'psa', 'Psat1g091000' => 'psa', 'Psat3g190880' => 'psa', 'Psat5g096040' => 'psa', 'Psat6g191040' => 'psa', 'Psat7g012480' => 'psa', 'PSO541G5803' => 'pso', 'PSO548G0086' => 'pso', 'PSO675G5335' => 'pso', 'PSO675G5880' => 'pso', 'PSO675G6514' => 'pso', 'QL07p023375' => 'qlo', 'QL93p1043_0023' => 'qlo', 'RcHm_v2.0_Chr2g0118571' => 'rch', 'RcHm_v2.0_Chr5g0031171' => 'rch', 'RcHm_v2.0_MTg0498421' => 'rch', 'RhsimMtG0002600' => 'rsi', 'SabraMtG0007200' => 'sbr', 'SalBow1G3504' => 'sbo', 'SalBow1G4210' => 'sbo', 'SalBow6G6095' => 'sbo', 'Sc17g0003730' => 'sci', 'Sc25g0002060' => 'sci', 'Sed0005999' => 'sed', 'Sed0015467' => 'sed', 'SEGI_15837' => 'sgi', 'SEGI_15868' => 'sgi', 'SEGI_19238' => 'sgi', 'SEGI_40200' => 'sgi', 'SGA_v2.0_scaffold245G44435' => 'sas', 'SGA_v2.0_scaffold255G45472' => 'sas', 'SGA_v2.0_scaffold324G48665' => 'sas', 'SGA_v2.0_scaffold3325G54315' => 'sas', 'SGA_v2.0_scaffold339G49282' => 'sas', 'SHI01961' => 'shi', 'SHI01963' => 'shi', 'SHI01964' => 'shi', 'SHI07819' => 'shi', 'SHI11170' => 'shi', 'SHI11171' => 'shi', 'SHI20096' => 'shi', 'SHI29633' => 'shi', 'SMO059G0001' => 'smo', 'SMO086G0056' => 'smo', 'SMO172G0196' => 'smo', 'Solyc00g500032.1' => 'sly', 'Solyc00g500077.1' => 'sly', 'Solyc00g500100.1' => 'sly', 'Solyc00g500117.1' => 'sly', 'Solyc00g500154.1' => 'sly', 'Solyc00g500245.1' => 'sly', 'Solyc00g500274.1' => 'sly', 'Solyc00g500309.1' => 'sly', 'Solyc03g063770.3' => 'sly', 'Solyc05g045770.1' => 'sly', 'Solyc05g045780.1' => 'sly', 'Solyc05g045822.1' => 'sly', 'Solyc05g045824.1' => 'sly', 'Solyc05g045826.1' => 'sly', 'Solyc05g045828.1' => 'sly', 'Solyc05g045840.1' => 'sly', 'Solyc05g045920.1' => 'sly', 'Solyc06g008140.1' => 'sly', 'Solyc08g045870.3' => 'sly', 'Solyc08g074700.1' => 'sly', 'Solyc09g015850.4' => 'sly', 'Solyc09g015860.1' => 'sly', 'Solyc09g050065.1' => 'sly', 'Solyc10g006910.3' => 'sly', 'Solyc12g035815.1' => 'sly', 'Solyc12g035820.3' => 'sly', 'Solyc12g038985.1' => 'sly', 'Sopen05g027050' => 'spe', 'Sopen05g027070' => 'spe', 'Sopen08g010250' => 'spe', 'Sopen10g002820' => 'spe', 'Sp3g25720' => 'spa', 'TAR358G0001' => 'tar', 'TAR365G0637' => 'tar', 'TAR375G0860' => 'tar', 'Thhalv10001268m.g' => 'esa', 'Thhalv10018971m.g' => 'esa', 'TPR.G21771' => 'tpr', 'TPR.G26049' => 'tpr', 'unitig_87.g28029' => 'ugi', 'unitig_91.g26513' => 'ugi' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001987' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001987' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001987' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001987' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Warning (2): Invalid argument supplied for foreach() [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001987', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '333', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A04p09400' => 'bna', 'A07p38510' => 'bna', 'Aa31csc822G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.831' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2082' => 'aag', 'Actinidia34925' => 'ach', 'Ah.01g011840' => 'amhyb', 'Ah.02g118900' => 'amhyb', 'Ah.06g195180' => 'amhyb', 'Ah.10g027330' => 'amhyb', 'Ah.10g027450' => 'amhyb', 'Ah.10g027970' => 'amhyb', 'Ah.10g028680' => 'amhyb', 'Ah.10g028690' => 'amhyb', 'Ah.10g028990' => 'amhyb', 'AL1G67310' => 'aly', 'AL2G20540' => 'aly', 'AL2G21740' => 'aly', 'AL4G23360' => 'aly', 'AL5G20250' => 'aly', 'Aqoxy4G01609' => 'aox', 'Aqoxy5G00594' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4JG1UT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A4IEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YIJR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8UR9GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5EGR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2JJBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K88Y93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L3L3JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MWRF4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T14CIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TY26DT' => 'arhy', 'AT2G28815' => 'ath', 'ATCG00790' => 'ath', 'ATMG00080' => 'ath', 'ATMG00090' => 'ath', 'ATR0424G001' => 'atr', 'ATR0620G114' => 'atr', 'ATR0661G567' => 'atr', 'Atru.chr11.441' => 'acertr', 'BcaB03g14981' => 'bca', 'BcaC08g46689' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00360' => 'bna', 'BolC6t39714H' => 'bol', 'BolSC28t60315H' => 'bol', 'BolSC28t60316H' => 'bol', 'BolSC28t60371H' => 'bol', 'BolSC29t60531H' => 'bol', 'BolSC29t60612H' => 'bol', 'BolSC29t60628H' => 'bol', 'BolSC35t60672H' => 'bol', 'BolSC35t60727H' => 'bol', 'BolSC49t61161H' => 'bol', 'BolSC56t61246H' => 'bol', 'BraA07t31411Z' => 'bra', 'BraSC159t45730Z' => 'bra', 'BraSC48t46240Z' => 'bra', 'BraSC48t46330Z' => 'bra', 'BraSC48t46331Z' => 'bra', 'BraSC54t46368Z' => 'bra', 'BraSC58t46443Z' => 'bra', 'C03p38120' => 'bna', 'C06p46690' => 'bna', 'CAN.G1202.8' => 'can', 'CAN.G1542.10' => 'can', 'CANSAT16G0046' => 'cansat', 'CARHR127990' => 'chi', 'CARHR282630' => 'chi', 'CARHR287450' => 'chi', 'CARHR288240' => 'chi', 'Carub.0004s0981' => 'cru', 'Ca_30750_v3' => 'car', 'CDE02G0251' => 'cde', 'CDE02G0755' => 'cde', 'Cfa023008' => 'cfa', 'Cfa025269' => 'cfa', 'Ciclev10004001m.g' => 'ccl', 'Ciclev10013231m.g' => 'ccl', 'Ciclev10021160m.g' => 'ccl', 'Ciclev10024383m.g' => 'ccl', 'CiPaw.01G253800' => 'cil', 'CiPaw.03G280800' => 'cil', 'ClCG00G004300' => 'cla', 'ClCG08G009700' => 'cla', 'ClCG08G015640' => 'cla', 'ClCG11G014310' => 'cla', 'Cpa.g.sc1367.1' => 'cpa', 'Cre06.g278224' => 'cre', 'CsaV3_UNG208600' => 'csa', 'DCAR_032447' => 'dca', 'DCAR_032448' => 'dca', 'DCAR_032523' => 'dca', 'Dinv06676' => 'din', 'Dinv35896' => 'din', 'ECA236G3336' => 'eca', 'ECA240G1514' => 'eca', 'EL10Ac1g01304' => 'bvu', 'EL10Ac4g10036' => 'bvu', 'EL10Ac5g11671' => 'bvu', 'EL10Ac5g12759' => 'bvu', 'EL10As12g24036' => 'bvu', 'Eucgr.A01256' => 'egr', 'Eucgr.H02719' => 'egr', 'Eucgr.J02744' => 'egr', 'FAN11G2273' => 'fan', 'FAN16G3148' => 'fan', 'FAN21G1218' => 'fan', 'FAN25G2706' => 'fan', 'FvH4_3g18440' => 'fve', 'Gohir.1Z049902' => 'ghi', 'Gohir.1Z049934' => 'ghi', 'Gohir.A03G162750' => 'ghi', 'Gohir.A05G144450' => 'ghi', 'Gohir.A05G396300' => 'ghi', 'Gohir.A12G024600' => 'ghi', 'Gohir.A12G178655' => 'ghi', 'Gohir.A13G113500' => 'ghi', 'Gohir.D01G102151' => 'ghi', 'Gohir.D01G121380' => 'ghi', 'Gohir.D01G157901' => 'ghi', 'Gohir.D08G014666' => 'ghi', 'Gohir.D09G095250' => 'ghi', 'Gohir.D12G072201' => 'ghi', 'Gorai.001G161500' => 'gra', 'Gorai.002G152200' => 'gra', 'Gorai.002G196000' => 'gra', 'Gorai.004G166700' => 'gra', 'Gorai.008G079300' => 'gra', 'HanXRQChr00c0349g0573951' => 'han', 'HanXRQChr00c0557g0575721' => 'han', 'HanXRQChr00c0593g0576391' => 'han', 'HanXRQChr01g0013341' => 'han', 'HanXRQChr01g0013351' => 'han', 'HanXRQChr01g0020191' => 'han', 'HanXRQChr04g0127461' => 'han', 'HanXRQChr05g0147721' => 'han', 'HanXRQChr05g0152551' => 'han', 'HanXRQChr06g0172541' => 'han', 'HanXRQChr10g0284411' => 'han', 'HanXRQChr10g0318031' => 'han', 'HanXRQChr11g0321121' => 'han', 'HanXRQChr11g0326991' => 'han', 'HanXRQChr11g0345301' => 'han', 'HanXRQChr12g0369881' => 'han', 'HanXRQChr14g0433081' => 'han', 'HanXRQChr15g0486801' => 'han', 'HanXRQChr16g0504311' => 'han', 'HanXRQChr16g0530211' => 'han', 'HanXRQChr17g0554541' => 'han', 'HanXRQCPg0580211' => 'han', 'HanXRQMTg0579601' => 'han', 'Haze_07953' => 'cav', 'Haze_16657' => 'cav', 'Hma1.2p1_0105F.1_g050680' => 'hma', 'Hund04058' => 'sun', 'Hund08207' => 'sun', 'Hund10099' => 'sun', 'Hund12658' => 'sun', 'Hund26845' => 'sun', 'Hund27846' => 'sun', 'Hund28045' => 'sun', 'Hund28418' => 'sun', 'Hund29038' => 'sun', 'Hund29684' => 'sun', 'Hund29734' => 'sun', 'Hund29823' => 'sun', 'Hund30343' => 'sun', 'Hund30390' => 'sun', 'Hund30392' => 'sun', 'Hund30419' => 'sun', 'Hund30965' => 'sun', 'Hund31335' => 'sun', 'Lalb_Chr00c21g0405751' => 'lal', 'Lalb_Chr00c24g0407071' => 'lal', 'Lalb_Chr03g0039341' => 'lal', 'Lalb_Chr11g0070091' => 'lal', 'Lalb_Chr11g0070101' => 'lal', 'Lalb_Chr11g0070921' => 'lal', 'Lalb_Chr13g0291611' => 'lal', 'Lalb_Chr18g0049321' => 'lal', 'Lalb_Chr19g0127771' => 'lal', 'Lalb_Chr23g0274251' => 'lal', 'Lj2C1237T35' => 'lonja', 'Lj2P1221T93' => 'lonja', 'Lj2P1230T111' => 'lonja', 'LjContig00315g0000313' => 'lja', 'LjContig00318g0015359' => 'lja', 'Lsat_1_v5_gn_0_38040' => 'lsa', 'Lsat_1_v5_gn_4_106021' => 'lsa', 'Lsat_1_v5_gn_4_178801' => 'lsa', 'Lsat_1_v5_gn_8_132861' => 'lsa', 'Lsat_1_v5_gn_8_92120' => 'lsa', 'Mapoly0052s0079' => 'mpo', 'Mapoly0118s0046' => 'mpo', 'MBI05_g05348_MAGBIO' => 'mbi', 'MBI16_g09478_MAGBIO' => 'mbi', 'MD06G1012400' => 'mdo', 'Medtr0002s0780' => 'mtr', 'Medtr0702s0030' => 'mtr', 'Medtr1779s0010' => 'mtr', 'Medtr2g087560' => 'mtr', 'Medtr4g034750' => 'mtr', 'Medtr8g081460' => 'mtr', 'MELO3C000108.2' => 'cme', 'MELO3C028575.2' => 'cme', 'Migut.D01329' => 'egut', 'Nitab4.5_0000216g0140' => 'nta', 'Nitab4.5_0000309g0180' => 'nta', 'Nitab4.5_0000309g0190' => 'nta', 'Nitab4.5_0000309g0210' => 'nta', 'Nitab4.5_0000309g0220' => 'nta', 'Nitab4.5_0000330g0070' => 'nta', 'Nitab4.5_0000334g0030' => 'nta', 'Nitab4.5_0000334g0040' => 'nta', 'Nitab4.5_0000451g0190' => 'nta', 'Nitab4.5_0001153g0110' => 'nta', 'Nitab4.5_0001761g0040' => 'nta', 'Nitab4.5_0002589g0040' => 'nta', 'Nitab4.5_0002616g0170' => 'nta', 'Nitab4.5_0007104g0030' => 'nta', 'Nitab4.5_0007876g0050' => 'nta', 'Nitab4.5_0007962g0010' => 'nta', 'Nitab4.5_0009561g0020' => 'nta', 'Nitab4.5_0009561g0030' => 'nta', 'Nitab4.5_0009703g0120' => 'nta', 'Nitab4.5_0010033g0070' => 'nta', 'Nitab4.5_0011784g0040' => 'nta', 'Nn002s41363' => 'nnu', 'Nn021s41520' => 'nnu', 'Nn070s42373' => 'nnu', 'Nn1g01958' => 'nnu', 'Nn1g10074' => 'nnu', 'Os11g0269100' => 'osa', 'Peaxi162Scf00084g00915' => 'pax', 'Peaxi162Scf00238g00149' => 'pax', 'Peaxi162Scf00360g00814' => 'pax', 'Peaxi162Scf00360g00815' => 'pax', 'Peaxi162Scf00934g00143' => 'pax', 'Peaxi162Scf01098g00013' => 'pax', 'PGR111G0010' => 'pgr', 'PGSC0003DMG400013869' => 'stu', 'PGSC0003DMG400030936' => 'stu', 'PGSC0003DMG400042640' => 'stu', 'Pp3c2_23477' => 'ppa', 'Pp3c2_23480' => 'ppa', 'Psat0s1446g0200' => 'psa', 'Psat0s406g0040' => 'psa', 'Psat1g091000' => 'psa', 'Psat3g190880' => 'psa', 'Psat5g096040' => 'psa', 'Psat6g191040' => 'psa', 'Psat7g012480' => 'psa', 'PSO541G5803' => 'pso', 'PSO548G0086' => 'pso', 'PSO675G5335' => 'pso', 'PSO675G5880' => 'pso', 'PSO675G6514' => 'pso', 'QL07p023375' => 'qlo', 'QL93p1043_0023' => 'qlo', 'RcHm_v2.0_Chr2g0118571' => 'rch', 'RcHm_v2.0_Chr5g0031171' => 'rch', 'RcHm_v2.0_MTg0498421' => 'rch', 'RhsimMtG0002600' => 'rsi', 'SabraMtG0007200' => 'sbr', 'SalBow1G3504' => 'sbo', 'SalBow1G4210' => 'sbo', 'SalBow6G6095' => 'sbo', 'Sc17g0003730' => 'sci', 'Sc25g0002060' => 'sci', 'Sed0005999' => 'sed', 'Sed0015467' => 'sed', 'SEGI_15837' => 'sgi', 'SEGI_15868' => 'sgi', 'SEGI_19238' => 'sgi', 'SEGI_40200' => 'sgi', 'SGA_v2.0_scaffold245G44435' => 'sas', 'SGA_v2.0_scaffold255G45472' => 'sas', 'SGA_v2.0_scaffold324G48665' => 'sas', 'SGA_v2.0_scaffold3325G54315' => 'sas', 'SGA_v2.0_scaffold339G49282' => 'sas', 'SHI01961' => 'shi', 'SHI01963' => 'shi', 'SHI01964' => 'shi', 'SHI07819' => 'shi', 'SHI11170' => 'shi', 'SHI11171' => 'shi', 'SHI20096' => 'shi', 'SHI29633' => 'shi', 'SMO059G0001' => 'smo', 'SMO086G0056' => 'smo', 'SMO172G0196' => 'smo', 'Solyc00g500032.1' => 'sly', 'Solyc00g500077.1' => 'sly', 'Solyc00g500100.1' => 'sly', 'Solyc00g500117.1' => 'sly', 'Solyc00g500154.1' => 'sly', 'Solyc00g500245.1' => 'sly', 'Solyc00g500274.1' => 'sly', 'Solyc00g500309.1' => 'sly', 'Solyc03g063770.3' => 'sly', 'Solyc05g045770.1' => 'sly', 'Solyc05g045780.1' => 'sly', 'Solyc05g045822.1' => 'sly', 'Solyc05g045824.1' => 'sly', 'Solyc05g045826.1' => 'sly', 'Solyc05g045828.1' => 'sly', 'Solyc05g045840.1' => 'sly', 'Solyc05g045920.1' => 'sly', 'Solyc06g008140.1' => 'sly', 'Solyc08g045870.3' => 'sly', 'Solyc08g074700.1' => 'sly', 'Solyc09g015850.4' => 'sly', 'Solyc09g015860.1' => 'sly', 'Solyc09g050065.1' => 'sly', 'Solyc10g006910.3' => 'sly', 'Solyc12g035815.1' => 'sly', 'Solyc12g035820.3' => 'sly', 'Solyc12g038985.1' => 'sly', 'Sopen05g027050' => 'spe', 'Sopen05g027070' => 'spe', 'Sopen08g010250' => 'spe', 'Sopen10g002820' => 'spe', 'Sp3g25720' => 'spa', 'TAR358G0001' => 'tar', 'TAR365G0637' => 'tar', 'TAR375G0860' => 'tar', 'Thhalv10001268m.g' => 'esa', 'Thhalv10018971m.g' => 'esa', 'TPR.G21771' => 'tpr', 'TPR.G26049' => 'tpr', 'unitig_87.g28029' => 'ugi', 'unitig_91.g26513' => 'ugi' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001987', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001987' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001987', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '333', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001987' ) ), 'genes' => array( 'A04p09400' => 'bna', 'A07p38510' => 'bna', 'Aa31csc822G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.831' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2082' => 'aag', 'Actinidia34925' => 'ach', 'Ah.01g011840' => 'amhyb', 'Ah.02g118900' => 'amhyb', 'Ah.06g195180' => 'amhyb', 'Ah.10g027330' => 'amhyb', 'Ah.10g027450' => 'amhyb', 'Ah.10g027970' => 'amhyb', 'Ah.10g028680' => 'amhyb', 'Ah.10g028690' => 'amhyb', 'Ah.10g028990' => 'amhyb', 'AL1G67310' => 'aly', 'AL2G20540' => 'aly', 'AL2G21740' => 'aly', 'AL4G23360' => 'aly', 'AL5G20250' => 'aly', 'Aqoxy4G01609' => 'aox', 'Aqoxy5G00594' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4JG1UT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7A4IEF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YIJR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8UR9GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D5EGR1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2JJBF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K88Y93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L3L3JQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MWRF4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T14CIR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TY26DT' => 'arhy', 'AT2G28815' => 'ath', 'ATCG00790' => 'ath', 'ATMG00080' => 'ath', 'ATMG00090' => 'ath', 'ATR0424G001' => 'atr', 'ATR0620G114' => 'atr', 'ATR0661G567' => 'atr', 'Atru.chr11.441' => 'acertr', 'BcaB03g14981' => 'bca', 'BcaC08g46689' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00360' => 'bna', 'BolC6t39714H' => 'bol', 'BolSC28t60315H' => 'bol', 'BolSC28t60316H' => 'bol', 'BolSC28t60371H' => 'bol', 'BolSC29t60531H' => 'bol', 'BolSC29t60612H' => 'bol', 'BolSC29t60628H' => 'bol', 'BolSC35t60672H' => 'bol', 'BolSC35t60727H' => 'bol', 'BolSC49t61161H' => 'bol', 'BolSC56t61246H' => 'bol', 'BraA07t31411Z' => 'bra', 'BraSC159t45730Z' => 'bra', 'BraSC48t46240Z' => 'bra', 'BraSC48t46330Z' => 'bra', 'BraSC48t46331Z' => 'bra', 'BraSC54t46368Z' => 'bra', 'BraSC58t46443Z' => 'bra', 'C03p38120' => 'bna', 'C06p46690' => 'bna', 'CAN.G1202.8' => 'can', 'CAN.G1542.10' => 'can', 'CANSAT16G0046' => 'cansat', 'CARHR127990' => 'chi', 'CARHR282630' => 'chi', 'CARHR287450' => 'chi', 'CARHR288240' => 'chi', 'Carub.0004s0981' => 'cru', 'Ca_30750_v3' => 'car', 'CDE02G0251' => 'cde', 'CDE02G0755' => 'cde', 'Cfa023008' => 'cfa', 'Cfa025269' => 'cfa', 'Ciclev10004001m.g' => 'ccl', 'Ciclev10013231m.g' => 'ccl', 'Ciclev10021160m.g' => 'ccl', 'Ciclev10024383m.g' => 'ccl', 'CiPaw.01G253800' => 'cil', 'CiPaw.03G280800' => 'cil', 'ClCG00G004300' => 'cla', 'ClCG08G009700' => 'cla', 'ClCG08G015640' => 'cla', 'ClCG11G014310' => 'cla', 'Cpa.g.sc1367.1' => 'cpa', 'Cre06.g278224' => 'cre', 'CsaV3_UNG208600' => 'csa', 'DCAR_032447' => 'dca', 'DCAR_032448' => 'dca', 'DCAR_032523' => 'dca', 'Dinv06676' => 'din', 'Dinv35896' => 'din', 'ECA236G3336' => 'eca', 'ECA240G1514' => 'eca', 'EL10Ac1g01304' => 'bvu', 'EL10Ac4g10036' => 'bvu', 'EL10Ac5g11671' => 'bvu', 'EL10Ac5g12759' => 'bvu', 'EL10As12g24036' => 'bvu', 'Eucgr.A01256' => 'egr', 'Eucgr.H02719' => 'egr', 'Eucgr.J02744' => 'egr', 'FAN11G2273' => 'fan', 'FAN16G3148' => 'fan', 'FAN21G1218' => 'fan', 'FAN25G2706' => 'fan', 'FvH4_3g18440' => 'fve', 'Gohir.1Z049902' => 'ghi', 'Gohir.1Z049934' => 'ghi', 'Gohir.A03G162750' => 'ghi', 'Gohir.A05G144450' => 'ghi', 'Gohir.A05G396300' => 'ghi', 'Gohir.A12G024600' => 'ghi', 'Gohir.A12G178655' => 'ghi', 'Gohir.A13G113500' => 'ghi', 'Gohir.D01G102151' => 'ghi', 'Gohir.D01G121380' => 'ghi', 'Gohir.D01G157901' => 'ghi', 'Gohir.D08G014666' => 'ghi', 'Gohir.D09G095250' => 'ghi', 'Gohir.D12G072201' => 'ghi', 'Gorai.001G161500' => 'gra', 'Gorai.002G152200' => 'gra', 'Gorai.002G196000' => 'gra', 'Gorai.004G166700' => 'gra', 'Gorai.008G079300' => 'gra', 'HanXRQChr00c0349g0573951' => 'han', 'HanXRQChr00c0557g0575721' => 'han', 'HanXRQChr00c0593g0576391' => 'han', 'HanXRQChr01g0013341' => 'han', 'HanXRQChr01g0013351' => 'han', 'HanXRQChr01g0020191' => 'han', 'HanXRQChr04g0127461' => 'han', 'HanXRQChr05g0147721' => 'han', 'HanXRQChr05g0152551' => 'han', 'HanXRQChr06g0172541' => 'han', 'HanXRQChr10g0284411' => 'han', 'HanXRQChr10g0318031' => 'han', 'HanXRQChr11g0321121' => 'han', 'HanXRQChr11g0326991' => 'han', 'HanXRQChr11g0345301' => 'han', 'HanXRQChr12g0369881' => 'han', 'HanXRQChr14g0433081' => 'han', 'HanXRQChr15g0486801' => 'han', 'HanXRQChr16g0504311' => 'han', 'HanXRQChr16g0530211' => 'han', 'HanXRQChr17g0554541' => 'han', 'HanXRQCPg0580211' => 'han', 'HanXRQMTg0579601' => 'han', 'Haze_07953' => 'cav', 'Haze_16657' => 'cav', 'Hma1.2p1_0105F.1_g050680' => 'hma', 'Hund04058' => 'sun', 'Hund08207' => 'sun', 'Hund10099' => 'sun', 'Hund12658' => 'sun', 'Hund26845' => 'sun', 'Hund27846' => 'sun', 'Hund28045' => 'sun', 'Hund28418' => 'sun', 'Hund29038' => 'sun', 'Hund29684' => 'sun', 'Hund29734' => 'sun', 'Hund29823' => 'sun', 'Hund30343' => 'sun', 'Hund30390' => 'sun', 'Hund30392' => 'sun', 'Hund30419' => 'sun', 'Hund30965' => 'sun', 'Hund31335' => 'sun', 'Lalb_Chr00c21g0405751' => 'lal', 'Lalb_Chr00c24g0407071' => 'lal', 'Lalb_Chr03g0039341' => 'lal', 'Lalb_Chr11g0070091' => 'lal', 'Lalb_Chr11g0070101' => 'lal', 'Lalb_Chr11g0070921' => 'lal', 'Lalb_Chr13g0291611' => 'lal', 'Lalb_Chr18g0049321' => 'lal', 'Lalb_Chr19g0127771' => 'lal', 'Lalb_Chr23g0274251' => 'lal', 'Lj2C1237T35' => 'lonja', 'Lj2P1221T93' => 'lonja', 'Lj2P1230T111' => 'lonja', 'LjContig00315g0000313' => 'lja', 'LjContig00318g0015359' => 'lja', 'Lsat_1_v5_gn_0_38040' => 'lsa', 'Lsat_1_v5_gn_4_106021' => 'lsa', 'Lsat_1_v5_gn_4_178801' => 'lsa', 'Lsat_1_v5_gn_8_132861' => 'lsa', 'Lsat_1_v5_gn_8_92120' => 'lsa', 'Mapoly0052s0079' => 'mpo', 'Mapoly0118s0046' => 'mpo', 'MBI05_g05348_MAGBIO' => 'mbi', 'MBI16_g09478_MAGBIO' => 'mbi', 'MD06G1012400' => 'mdo', 'Medtr0002s0780' => 'mtr', 'Medtr0702s0030' => 'mtr', 'Medtr1779s0010' => 'mtr', 'Medtr2g087560' => 'mtr', 'Medtr4g034750' => 'mtr', 'Medtr8g081460' => 'mtr', 'MELO3C000108.2' => 'cme', 'MELO3C028575.2' => 'cme', 'Migut.D01329' => 'egut', 'Nitab4.5_0000216g0140' => 'nta', 'Nitab4.5_0000309g0180' => 'nta', 'Nitab4.5_0000309g0190' => 'nta', 'Nitab4.5_0000309g0210' => 'nta', 'Nitab4.5_0000309g0220' => 'nta', 'Nitab4.5_0000330g0070' => 'nta', 'Nitab4.5_0000334g0030' => 'nta', 'Nitab4.5_0000334g0040' => 'nta', 'Nitab4.5_0000451g0190' => 'nta', 'Nitab4.5_0001153g0110' => 'nta', 'Nitab4.5_0001761g0040' => 'nta', 'Nitab4.5_0002589g0040' => 'nta', 'Nitab4.5_0002616g0170' => 'nta', 'Nitab4.5_0007104g0030' => 'nta', 'Nitab4.5_0007876g0050' => 'nta', 'Nitab4.5_0007962g0010' => 'nta', 'Nitab4.5_0009561g0020' => 'nta', 'Nitab4.5_0009561g0030' => 'nta', 'Nitab4.5_0009703g0120' => 'nta', 'Nitab4.5_0010033g0070' => 'nta', 'Nitab4.5_0011784g0040' => 'nta', 'Nn002s41363' => 'nnu', 'Nn021s41520' => 'nnu', 'Nn070s42373' => 'nnu', 'Nn1g01958' => 'nnu', 'Nn1g10074' => 'nnu', 'Os11g0269100' => 'osa', 'Peaxi162Scf00084g00915' => 'pax', 'Peaxi162Scf00238g00149' => 'pax', 'Peaxi162Scf00360g00814' => 'pax', 'Peaxi162Scf00360g00815' => 'pax', 'Peaxi162Scf00934g00143' => 'pax', 'Peaxi162Scf01098g00013' => 'pax', 'PGR111G0010' => 'pgr', 'PGSC0003DMG400013869' => 'stu', 'PGSC0003DMG400030936' => 'stu', 'PGSC0003DMG400042640' => 'stu', 'Pp3c2_23477' => 'ppa', 'Pp3c2_23480' => 'ppa', 'Psat0s1446g0200' => 'psa', 'Psat0s406g0040' => 'psa', 'Psat1g091000' => 'psa', 'Psat3g190880' => 'psa', 'Psat5g096040' => 'psa', 'Psat6g191040' => 'psa', 'Psat7g012480' => 'psa', 'PSO541G5803' => 'pso', 'PSO548G0086' => 'pso', 'PSO675G5335' => 'pso', 'PSO675G5880' => 'pso', 'PSO675G6514' => 'pso', 'QL07p023375' => 'qlo', 'QL93p1043_0023' => 'qlo', 'RcHm_v2.0_Chr2g0118571' => 'rch', 'RcHm_v2.0_Chr5g0031171' => 'rch', 'RcHm_v2.0_MTg0498421' => 'rch', 'RhsimMtG0002600' => 'rsi', 'SabraMtG0007200' => 'sbr', 'SalBow1G3504' => 'sbo', 'SalBow1G4210' => 'sbo', 'SalBow6G6095' => 'sbo', 'Sc17g0003730' => 'sci', 'Sc25g0002060' => 'sci', 'Sed0005999' => 'sed', 'Sed0015467' => 'sed', 'SEGI_15837' => 'sgi', 'SEGI_15868' => 'sgi', 'SEGI_19238' => 'sgi', 'SEGI_40200' => 'sgi', 'SGA_v2.0_scaffold245G44435' => 'sas', 'SGA_v2.0_scaffold255G45472' => 'sas', 'SGA_v2.0_scaffold324G48665' => 'sas', 'SGA_v2.0_scaffold3325G54315' => 'sas', 'SGA_v2.0_scaffold339G49282' => 'sas', 'SHI01961' => 'shi', 'SHI01963' => 'shi', 'SHI01964' => 'shi', 'SHI07819' => 'shi', 'SHI11170' => 'shi', 'SHI11171' => 'shi', 'SHI20096' => 'shi', 'SHI29633' => 'shi', 'SMO059G0001' => 'smo', 'SMO086G0056' => 'smo', 'SMO172G0196' => 'smo', 'Solyc00g500032.1' => 'sly', 'Solyc00g500077.1' => 'sly', 'Solyc00g500100.1' => 'sly', 'Solyc00g500117.1' => 'sly', 'Solyc00g500154.1' => 'sly', 'Solyc00g500245.1' => 'sly', 'Solyc00g500274.1' => 'sly', 'Solyc00g500309.1' => 'sly', 'Solyc03g063770.3' => 'sly', 'Solyc05g045770.1' => 'sly', 'Solyc05g045780.1' => 'sly', 'Solyc05g045822.1' => 'sly', 'Solyc05g045824.1' => 'sly', 'Solyc05g045826.1' => 'sly', 'Solyc05g045828.1' => 'sly', 'Solyc05g045840.1' => 'sly', 'Solyc05g045920.1' => 'sly', 'Solyc06g008140.1' => 'sly', 'Solyc08g045870.3' => 'sly', 'Solyc08g074700.1' => 'sly', 'Solyc09g015850.4' => 'sly', 'Solyc09g015860.1' => 'sly', 'Solyc09g050065.1' => 'sly', 'Solyc10g006910.3' => 'sly', 'Solyc12g035815.1' => 'sly', 'Solyc12g035820.3' => 'sly', 'Solyc12g038985.1' => 'sly', 'Sopen05g027050' => 'spe', 'Sopen05g027070' => 'spe', 'Sopen08g010250' => 'spe', 'Sopen10g002820' => 'spe', 'Sp3g25720' => 'spa', 'TAR358G0001' => 'tar', 'TAR365G0637' => 'tar', 'TAR375G0860' => 'tar', 'Thhalv10001268m.g' => 'esa', 'Thhalv10018971m.g' => 'esa', 'TPR.G21771' => 'tpr', 'TPR.G26049' => 'tpr', 'unitig_87.g28029' => 'ugi', 'unitig_91.g26513' => 'ugi' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001987' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001987' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001987' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001987' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151