Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2C222T2 Lonicera japonica HOM05D004152 ORTHO05D004878 8.8e-145 516.9 260 100.0
PGSC0003DMG400024154 Solanum tuberosum HOM05D004152 ORTHO05D004878 2.4e-94 349.4 227 78.0
Sopen06g020930 Solanum pennellii HOM05D004152 ORTHO05D004878 5.4e-94 348.2 225 78.2
Solyc06g060790.1 Solanum lycopersicum HOM05D004152 ORTHO05D004878 7.1e-94 347.8 225 78.2
Nitab4.5_0000618g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 9.3e-94 347.4 228 76.8
Nitab4.5_0002881g0050 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.6e-93 346.7 228 77.6
CSS0047405 Camellia sinensis var. sinensis HOM05D004152 ORTHO05D004878 2.1e-93 346.3 259 71.4
COL.COLO4_08312 Corchorus olitorius HOM05D004152 ORTHO05D004878 1.1e-91 340.5 212 80.7
QL12p011587 Quercus lobata HOM05D004152 ORTHO05D004878 2.5e-91 339.3 264 69.3
ClCG01G004210 Citrullus lanatus HOM05D004152 ORTHO05D004878 3.3e-91 339.0 218 75.2
CANSAT21G2552 Cannabis sativa HOM05D004152 ORTHO05D004878 7.4e-91 337.8 260 68.1
Gohir.A04G110300 Gossypium hirsutum HOM05D004152 ORTHO05D004878 7.4e-91 337.8 255 70.6
Manes.01G082700 Manihot esculenta HOM05D004152 ORTHO05D004878 1.3e-90 337.0 193 81.9
VMungo0331G1163 Vigna mungo HOM05D004152 ORTHO05D004878 1.3e-90 337.0 254 70.1
Thecc.02G150400 Theobroma cacao HOM05D004152 ORTHO05D004878 2.1e-90 336.3 242 72.7
Glyma.08G210500 Glycine max HOM05D004152 ORTHO05D004878 4.8e-90 335.1 234 72.2
Gorai.012G137200 Gossypium raimondii HOM05D004152 ORTHO05D004878 8.1e-90 334.3 255 70.2
Phvul.010G153800 Phaseolus vulgaris HOM05D004152 ORTHO05D004878 8.1e-90 334.3 205 80.5
Duzib052G0353 Durio zibethinus HOM05D004152 ORTHO05D004878 1.4e-89 333.6 262 67.2
Haze_18794 Corylus avellana HOM05D004152 ORTHO05D004878 1.8e-89 333.2 259 69.5
Glyma.07G032200 Glycine max HOM05D004152 ORTHO05D004878 1.8e-89 333.2 225 74.7
Aqoxy7G00694 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 3.1e-89 332.4 261 67.8
Gohir.D04G150500 Gossypium hirsutum HOM05D004152 ORTHO05D004878 3.1e-89 332.4 258 69.4
Gohir.D04G150600 Gossypium hirsutum HOM05D004152 ORTHO05D004878 3.1e-89 332.4 258 69.4
Cfa019694 Carpinus fangiana HOM05D004152 ORTHO05D004878 4.0e-89 332.0 259 68.3
TWI81G0703 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 4.0e-89 332.0 216 77.8
THA.LOC104824129 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 6.9e-89 331.3 239 70.7
HanXRQChr13g0417841 Helianthus annuus HOM05D004152 ORTHO05D004878 1.2e-88 330.5 247 72.1
Potri.003G107800 Populus trichocarpa HOM05D004152 ORTHO05D004878 1.2e-88 330.5 250 67.2
arahy.Tifrunner.gnm1.ann1.HAI1EF Arachis hypogaea HOM05D004152 ORTHO05D004878 2.0e-88 329.7 197 82.2
CAN.G62.23 Capsicum annuum HOM05D004152 ORTHO05D004878 2.0e-88 329.7 181 89.5
MELO3C005518.2 Cucumis melo HOM05D004152 ORTHO05D004878 2.0e-88 329.7 201 79.6
Gorai.005G214700 Gossypium raimondii HOM05D004152 ORTHO05D004878 2.0e-88 329.7 233 73.0
CiPaw.16G091100 Carya illinoinensis HOM05D004152 ORTHO05D004878 4.5e-88 328.6 261 67.4
Sc10g0005540 Simmondsia chinensis HOM05D004152 ORTHO05D004878 4.5e-88 328.6 215 77.2
BraA03t11610Z Brassica rapa HOM05D004152 ORTHO05D004878 7.6e-88 327.8 268 66.0
BolC3t15222H Brassica oleracea HOM05D004152 ORTHO05D004878 9.9e-88 327.4 267 65.5
FAN04G2897 Fragaria x ananassa HOM05D004152 ORTHO05D004878 9.9e-88 327.4 224 75.0
Sabra03G0074600 Salix brachista HOM05D004152 ORTHO05D004878 9.9e-88 327.4 259 67.2
Lj3g0007947 Lotus japonicus HOM05D004152 ORTHO05D004878 1.7e-87 326.6 253 68.8
PGR031G2826 Punica granatum HOM05D004152 ORTHO05D004878 1.7e-87 326.6 266 66.9
A03p23950 Brassica napus HOM05D004152 ORTHO05D004878 2.2e-87 326.2 268 66.0
Ca_20428_v3 Cicer arietinum L. HOM05D004152 ORTHO05D004878 2.2e-87 326.2 255 67.1
Psat7g255640 Pisum sativum HOM05D004152 ORTHO05D004878 2.2e-87 326.2 218 74.3
MD04G1062100 Malus domestica HOM05D004152 ORTHO05D004878 2.9e-87 325.9 255 68.6
C03p28570 Brassica napus HOM05D004152 ORTHO05D004878 4.9e-87 325.1 267 64.8
Sed0004379 Sechium edule HOM05D004152 ORTHO05D004878 4.9e-87 325.1 235 70.6
TAR629G1833 Trochodendron aralioides HOM05D004152 ORTHO05D004878 4.9e-87 325.1 209 76.1
Carub.0004s2557 Capsella rubella HOM05D004152 ORTHO05D004878 6.4e-87 324.7 266 65.8
Lalb_Chr25g0279491 Lupinus albus HOM05D004152 ORTHO05D004878 8.4e-87 324.3 226 72.1
Prupe.5G066300 Prunus persica HOM05D004152 ORTHO05D004878 8.4e-87 324.3 256 68.8
Aqoxy7G00850 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 3.2e-86 322.4 265 67.2
MSTRG.12117 Avicennia marina HOM05D004152 ORTHO05D004878 3.2e-86 322.4 190 83.2
DCAR_002274 Daucus carota HOM05D004152 ORTHO05D004878 3.2e-86 322.4 262 65.6
Gohir.D02G191900 Gossypium hirsutum HOM05D004152 ORTHO05D004878 3.2e-86 322.4 241 70.1
Cpa.g.sc29.188 Carica papaya HOM05D004152 ORTHO05D004878 4.2e-86 322.0 261 65.1
Medtr4g011180 Medicago truncatula HOM05D004152 ORTHO05D004878 5.5e-86 321.6 203 76.8
arahy.Tifrunner.gnm1.ann1.Y2K32V Arachis hypogaea HOM05D004152 ORTHO05D004878 7.1e-86 321.2 182 84.1
SGA_v2.0_scaffold104G30172 Striga asiatica HOM05D004152 ORTHO05D004878 7.1e-86 321.2 264 67.8
FAN13G0727 Fragaria x ananassa HOM05D004152 ORTHO05D004878 9.3e-86 320.9 195 81.5
TWI60G0584 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 9.3e-86 320.9 259 67.2
Nitab4.5_0002881g0130 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.2e-85 320.5 262 66.8
CsaV3_5G004400 Cucumis sativus L. HOM05D004152 ORTHO05D004878 2.1e-85 319.7 254 67.7
Rhsim07G0110300 Rhododendron simsii HOM05D004152 ORTHO05D004878 2.1e-85 319.7 270 67.0
FAN08G2273 Fragaria x ananassa HOM05D004152 ORTHO05D004878 2.7e-85 319.3 257 67.3
AL4G41740 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 3.5e-85 318.9 260 66.2
BraA05t19344Z Brassica rapa HOM05D004152 ORTHO05D004878 3.5e-85 318.9 224 71.4
FAN18G1702 Fragaria x ananassa HOM05D004152 ORTHO05D004878 3.5e-85 318.9 259 67.2
Oeu040710.1 Olea europaea HOM05D004152 ORTHO05D004878 3.5e-85 318.9 246 69.1
MD06G1055800 Malus domestica HOM05D004152 ORTHO05D004878 4.6e-85 318.5 240 68.8
PSO210G0624 Papaver somniferum HOM05D004152 ORTHO05D004878 6.0e-85 318.2 262 67.2
ECA240G2077 Erigeron canadensis HOM05D004152 ORTHO05D004878 7.9e-85 317.8 218 73.9
BolC4t22054H Brassica oleracea HOM05D004152 ORTHO05D004878 1.0e-84 317.4 229 70.7
DCAR_008502 Daucus carota HOM05D004152 ORTHO05D004878 1.0e-84 317.4 260 67.3
Nn6g33894 Nelumbo nucifera HOM05D004152 ORTHO05D004878 1.0e-84 317.4 258 66.7
CARHR138160 Cardamine hirsuta HOM05D004152 ORTHO05D004878 1.3e-84 317.0 259 64.9
Migut.A01125 Erythranthe guttata HOM05D004152 ORTHO05D004878 1.3e-84 317.0 179 86.6
Atru.chr9.1286 Acer truncatum HOM05D004152 ORTHO05D004878 1.8e-84 316.6 194 78.9
AT2G43090 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 1.8e-84 316.6 260 65.8
Peaxi162Scf01022g00023 Petunia axillaris HOM05D004152 ORTHO05D004878 1.8e-84 316.6 242 68.2
BcaNung03538 Brassica carinata HOM05D004152 ORTHO05D004878 3.0e-84 315.8 274 63.5
Sp4g25220 Schrenkiella parvula HOM05D004152 ORTHO05D004878 3.9e-84 315.5 265 64.5
BcaC02g12415 Brassica carinata HOM05D004152 ORTHO05D004878 5.1e-84 315.1 269 64.7
AUR62007107 Chenopodium quinoa HOM05D004152 ORTHO05D004878 5.1e-84 315.1 250 67.6
Thhalv10017142m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 5.1e-84 315.1 265 63.0
FvH4_5g19250 Fragaria vesca HOM05D004152 ORTHO05D004878 5.1e-84 315.1 261 66.7
Ciclev10021871m.g Citrus clementina HOM05D004152 ORTHO05D004878 6.7e-84 314.7 245 67.8
HanXRQChr03g0088791 Helianthus annuus HOM05D004152 ORTHO05D004878 6.7e-84 314.7 248 68.1
PSO210G4930 Papaver somniferum HOM05D004152 ORTHO05D004878 8.7e-84 314.3 263 65.0
unitig_899.g15440 Utricularia gibba HOM05D004152 ORTHO05D004878 1.1e-83 313.9 196 77.6
SalBow6G1227 Salvia bowleyana HOM05D004152 ORTHO05D004878 3.3e-83 312.4 259 63.3
Ah.12g054170 Amaranthus hybridus HOM05D004152 ORTHO05D004878 1.6e-82 310.1 247 66.4
AUR62019969 Chenopodium quinoa HOM05D004152 ORTHO05D004878 3.7e-82 308.9 205 74.6
EL10Ac5g12362 Beta vulgaris HOM05D004152 ORTHO05D004878 1.8e-81 306.6 248 64.5
CARHR169410 Cardamine hirsuta HOM05D004152 ORTHO05D004878 4.0e-81 305.4 259 62.9
Aa31LG10G13480 Aethionema arabicum HOM05D004152 ORTHO05D004878 2.6e-80 302.8 261 62.8
THA.LOC104803472 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 7.6e-80 301.2 263 63.1
Actinidia10839 Actinidia chinensis HOM05D004152 ORTHO05D004878 2.2e-79 299.7 239 67.4
CARHR169370 Cardamine hirsuta HOM05D004152 ORTHO05D004878 1.4e-78 297.0 254 62.2
BcaB01g01073 Brassica carinata HOM05D004152 ORTHO05D004878 3.5e-77 292.4 201 72.1
Hund14573 Selenicereus undatus HOM05D004152 ORTHO05D004878 3.5e-77 292.4 179 79.9
AL5G40810 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 4.6e-77 292.0 261 62.5
Lj8A264G55 Lonicera japonica HOM05D004152 ORTHO05D004878 1.0e-76 290.8 171 84.2
Aa31LG1G24900 Aethionema arabicum HOM05D004152 ORTHO05D004878 5.1e-76 288.5 238 63.9
AT3G58990 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 6.7e-76 288.1 261 60.9
SEGI_19785 Sequoiadendron giganteum HOM05D004152 ORTHO05D004878 7.4e-75 284.6 179 75.4
Carub.0005s2573 Capsella rubella HOM05D004152 ORTHO05D004878 9.7e-75 284.3 260 58.8
Lsat_1_v5_gn_6_92521 Lactuca sativa HOM05D004152 ORTHO05D004878 9.7e-75 284.3 261 62.5
Carub.0002s0595 Capsella rubella HOM05D004152 ORTHO05D004878 1.6e-74 283.5 250 61.2
CDE11G0751 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 1.6e-74 283.5 205 69.8
ATR0693G400 Amborella trichopoda HOM05D004152 ORTHO05D004878 6.3e-74 281.6 205 72.7
Sp4g25230 Schrenkiella parvula HOM05D004152 ORTHO05D004878 4.1e-73 278.9 206 69.4
Zm00001eb249330 Zea mays HOM05D004152 ORTHO05D004878 4.1e-73 278.9 185 73.5
CARHR138170 Cardamine hirsuta HOM05D004152 ORTHO05D004878 5.3e-73 278.5 259 60.2
BraA05t19345Z Brassica rapa HOM05D004152 ORTHO05D004878 6.9e-73 278.1 254 61.4
Aa31LG1G24910 Aethionema arabicum HOM05D004152 ORTHO05D004878 1.5e-72 276.9 226 65.0
A05p03590 Brassica napus HOM05D004152 ORTHO05D004878 1.5e-72 276.9 261 60.9
Thhalv10017125m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 1.5e-72 276.9 256 60.2
BcaC01g05264 Brassica carinata HOM05D004152 ORTHO05D004878 3.4e-72 275.8 265 59.6
BcaC02g12414 Brassica carinata HOM05D004152 ORTHO05D004878 3.4e-72 275.8 260 60.8
Os02g0655300 Oryza sativa ssp. japonica HOM05D004152 ORTHO05D004878 1.3e-71 273.9 183 72.7
C04p04150 Brassica napus HOM05D004152 ORTHO05D004878 1.7e-71 273.5 260 60.0
BolC4t22055H Brassica oleracea HOM05D004152 ORTHO05D004878 1.7e-71 273.5 260 60.0
BcaNung03539 Brassica carinata HOM05D004152 ORTHO05D004878 1.4e-70 270.4 251 59.0
AL4G41750 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 2.5e-70 269.6 246 59.8
AT2G43100 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 7.2e-70 268.1 254 58.7
SMO274G0039 Selaginella moellendorffii HOM05D004152 ORTHO05D004878 1.2e-69 267.3 178 72.5
Mapoly0001s0104 Marchantia polymorpha HOM05D004152 ORTHO05D004878 3.6e-69 265.8 179 70.4
Nitab4.5_0001410g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.8e-68 263.5 194 70.1
Dinv39162 Davidia involucrata HOM05D004152 ORTHO05D004878 2.3e-68 263.1 159 83.6
Pp3c1_29090 Physcomitrium patens HOM05D004152 ORTHO05D004878 2.3e-68 263.1 178 70.2
AagrBONN_evm.TU.Sc2ySwM_228.3330 Anthoceros agrestis HOM05D004152 ORTHO05D004878 3.0e-68 262.7 185 68.6
Carub.0004s2558 Capsella rubella HOM05D004152 ORTHO05D004878 3.9e-68 262.3 250 58.4
Pp3c14_19120 Physcomitrium patens HOM05D004152 ORTHO05D004878 1.3e-66 257.3 178 68.0
Cre06.g252650 Chlamydomonas reinhardtii HOM05D004152 ORTHO05D004878 3.4e-64 249.2 177 67.2
Gohir.A03G168700 Gossypium hirsutum HOM05D004152 ORTHO05D004878 5.9e-64 248.4 211 63.0
CDE11G0227 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 1.7e-63 246.9 150 78.7
Cc08_g12220 Coffea canephora HOM05D004152 ORTHO05D004878 9.4e-62 241.1 204 65.7
Dinv21650 Davidia involucrata HOM05D004152 ORTHO05D004878 5.9e-56 221.9 126 86.5
SHI09309 Sapria himalayana HOM05D004152 ORTHO05D004878 5.0e-55 218.8 129 78.3
SalBow1G7183 Salvia bowleyana HOM05D004152 ORTHO05D004878 1.2e-53 214.2 215 58.1
Lj8A267T12 Lonicera japonica HOM05D004152 ORTHO05D004878 2.1e-53 213.4 256 50.8
HPP92_020921 Vanilla planifolia HOM05D004152 ORTHO05D004878 7.9e-53 211.5 165 62.4
Actinidia31515 Actinidia chinensis HOM05D004152 ORTHO05D004878 6.7e-52 208.4 194 62.9
EL10Ac5g12363 Beta vulgaris HOM05D004152 ORTHO05D004878 3.3e-51 206.1 220 53.6
Lj8A266T18 Lonicera japonica HOM05D004152 ORTHO05D004878 3.7e-50 202.6 256 50.0
Nitab4.5_0002372g0010 Nicotiana tabacum HOM05D004152 ORTHO05D004878 6.3e-50 201.8 117 84.6
Ah.12g054180 Amaranthus hybridus HOM05D004152 ORTHO05D004878 3.8e-47 192.6 220 50.5
Carub.0005s2576 Capsella rubella HOM05D004152 ORTHO05D004878 3.8e-47 192.6 174 59.8
Rhsim05G0121600 Rhododendron simsii HOM05D004152 ORTHO05D004878 3.0e-44 183.0 156 65.4
Oeu047732.1 Olea europaea HOM05D004152 ORTHO05D004878 4.0e-44 182.6 264 45.5
TPR.G10893 Trifolium pratense HOM05D004152 ORTHO05D004878 2.8e-42 176.4 124 73.4
Sed0021243 Sechium edule HOM05D004152 ORTHO05D004878 8.2e-42 174.9 180 56.1
BcaB05g25308 Brassica carinata HOM05D004152 ORTHO05D004878 3.1e-33 146.4 169 52.1
Lsat_1_v5_gn_7_1160 Lactuca sativa HOM05D004152 ORTHO05D004878 2.1e-29 133.7 75 81.3
A05p03570 Brassica napus HOM05D000373 ORTHO05D007048 2.3e-28 130.2 78 76.9
C04p04140 Brassica napus HOM05D000373 ORTHO05D007048 3.0e-28 129.8 78 75.6
SalBow1G0783 Salvia bowleyana HOM05D001430 ORTHO05D004878 2.0e-27 127.1 103 61.2
Lsat_1_v5_gn_5_55401 Lactuca sativa HOM05D004152 ORTHO05D004878 4.1e-25 119.4 131 50.4
AUR62007106 Chenopodium quinoa HOM05D004152 ORTHO05D004878 2.0e-24 117.1 112 58.0
ATR0693G063 Amborella trichopoda HOM05D004152 ORTHO05D004878 1.1e-22 111.3 125 52.0
Rhsim03G0103100 Rhododendron simsii HOM05D004152 ORTHO05D004878 1.5e-22 110.9 88 68.2
GSVIVG01007403001 Vitis vinifera HOM05D004152 ORTHO05D004878 6.0e-16 89.0 197 38.1
COL.COLO4_34273 Corchorus olitorius HOM05D004152 ORTHO05D004878 7.3e-14 82.0 179 36.9
Ah.14g083550 Amaranthus hybridus HOM05D004152 ORTHO05D004878 3.6e-13 79.7 50 78.0
C03p28580 Brassica napus HOM05D004152 ORTHO05D004878 9.8e-11 71.6 70 50.0
Cfa024802 Carpinus fangiana HOM05D003112 ORTHO05D003660 6.4e-10 68.9 133 36.8
MCO01G562 Micromonas commoda HOM05D003112 ORTHO05D003660 1.4e-09 67.8 151 31.1
PRCOL_00005264 Prasinoderma coloniale HOM05D003112 ORTHO05D003660 1.4e-09 67.8 199 29.6
CsaV3_5G004360 Cucumis sativus L. HOM05D004152 ORTHO05D004878 2.1e-08 63.9 54 59.3
Cfa023744 Carpinus fangiana HOM05D003112 ORTHO05D003660 4.6e-08 62.8 157 30.6
BcaB01g00650 Brassica carinata HOM05D004152 ORTHO05D004878 6.0e-08 62.4 54 53.7
BcaC01g01539 Brassica carinata HOM05D004152 ORTHO05D004878 7.3e-06 55.5 60 48.3
A03p23960 Brassica napus HOM05D004152 ORTHO05D004878 7.3e-06 55.5 51 56.9
Ca_28701_v3 Cicer arietinum L. HOM05D004152 ORTHO05D003660 9.5e-06 55.1 100 39.0


User provided reference genes

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