Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2C188G13 Lonicera japonica HOM05D004635 ORTHO05D005899 9.1e-44 179.9 92 100.0
Lj6A677T80 Lonicera japonica HOM05D004635 ORTHO05D005899 2.2e-37 158.7 85 92.9
Dinv38955 Davidia involucrata HOM05D004635 ORTHO05D005899 6.1e-24 114.0 79 73.4
Atru.chr9.2220 Acer truncatum HOM05D004635 ORTHO05D005899 1.3e-21 106.3 81 64.2
Hma1.2p1_0377F.1_g139240 Hydrangea macrophylla HOM05D004635 ORTHO05D005899 1.3e-21 106.3 73 65.8
Actinidia02016 Actinidia chinensis HOM05D004635 ORTHO05D005899 1.7e-21 105.9 86 61.6
CSS0019840 Camellia sinensis var. sinensis HOM05D004635 ORTHO05D005899 2.2e-21 105.5 79 65.8
Lj4g0017456 Lotus japonicus HOM05D004635 ORTHO05D005899 2.2e-21 105.5 87 60.9
vmacro11312 Vaccinium macrocarpon HOM05D004635 ORTHO05D005899 4.8e-21 104.4 79 65.8
PGSC0003DMG400005819 Solanum tuberosum HOM05D004635 ORTHO05D005899 3.1e-20 101.7 79 64.6
CAN.G792.84 Capsicum annuum HOM05D004635 ORTHO05D005899 4.1e-20 101.3 86 62.8
FAN18G0535 Fragaria x ananassa HOM05D004635 ORTHO05D005899 7.0e-20 100.5 67 68.7
Solyc08g007990.3 Solanum lycopersicum HOM05D004635 ORTHO05D005899 7.0e-20 100.5 79 65.8
Sopen08g003860 Solanum pennellii HOM05D004635 ORTHO05D005899 7.0e-20 100.5 79 65.8
FvH4_5g23090 Fragaria vesca HOM05D004635 ORTHO05D005899 1.2e-19 99.8 67 68.7
FAN18G1690 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.2e-19 99.8 67 68.7
FAN26G1714 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.2e-19 99.8 67 68.7
FAN28G2416 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.2e-19 99.8 67 68.7
VMungo0251G2718 Vigna mungo HOM05D004635 ORTHO05D005899 1.6e-19 99.4 80 63.8
PGSC0003DMG400029793 Solanum tuberosum HOM05D004635 ORTHO05D005899 2.0e-19 99.0 79 64.6
MSTRG.13840 Avicennia marina HOM05D004635 ORTHO05D005899 3.5e-19 98.2 86 61.6
DCAR_000603 Daucus carota HOM05D004635 ORTHO05D005899 3.5e-19 98.2 83 59.0
Peaxi162Scf00102g01512 Petunia axillaris HOM05D004635 ORTHO05D005899 3.5e-19 98.2 85 60.0
RcHm_v2.0_Chr7g0179141 Rosa chinensis HOM05D004635 ORTHO05D005899 4.5e-19 97.8 71 63.4
Nitab4.5_0003907g0020 Nicotiana tabacum HOM05D004635 ORTHO05D005899 1.3e-18 96.3 79 62.0
Duzib084G1397 Durio zibethinus HOM05D004635 ORTHO05D005899 1.7e-18 95.9 71 66.2
Glyma.05G206400 Glycine max HOM05D004635 ORTHO05D005899 1.7e-18 95.9 80 62.5
Nitab4.5_0004836g0050 Nicotiana tabacum HOM05D004635 ORTHO05D005899 1.7e-18 95.9 79 59.5
PGR042G2640 Punica granatum HOM05D004635 ORTHO05D005899 2.2e-18 95.5 67 70.1
SGA_v2.0_scaffold146G36254 Striga asiatica HOM05D004635 ORTHO05D005899 3.8e-18 94.7 83 61.4
Gohir.A09G192700 Gossypium hirsutum HOM05D004635 ORTHO05D005899 5.0e-18 94.4 79 62.0
FAN08G3353 Fragaria x ananassa HOM05D004635 ORTHO05D005899 6.5e-18 94.0 91 56.0
FAN13G3179 Fragaria x ananassa HOM05D004635 ORTHO05D005899 8.5e-18 93.6 91 54.9
Phvul.002G288000 Phaseolus vulgaris HOM05D004635 ORTHO05D005899 8.5e-18 93.6 80 60.0
Lalb_Chr05g0224871 Lupinus albus HOM05D004635 ORTHO05D005899 1.1e-17 93.2 78 62.8
ECA240G4094 Erigeron canadensis HOM05D004635 ORTHO05D005899 1.5e-17 92.8 86 59.3
Ciclev10019281m.g Citrus clementina HOM05D004635 ORTHO05D005899 1.9e-17 92.4 78 62.8
RcHm_v2.0_Chr7g0211871 Rosa chinensis HOM05D004635 ORTHO05D005899 1.9e-17 92.4 90 56.7
RcHm_v2.0_Chr7g0211921 Rosa chinensis HOM05D004635 ORTHO05D005899 1.9e-17 92.4 90 56.7
FAN04G0694 Fragaria x ananassa HOM05D004635 ORTHO05D005899 2.5e-17 92.0 91 54.9
Glyma.08G013300 Glycine max HOM05D004635 ORTHO05D005899 2.5e-17 92.0 85 58.8
Thecc.03G276500 Theobroma cacao HOM05D004635 ORTHO05D005899 2.5e-17 92.0 79 60.8
TAR629G3080 Trochodendron aralioides HOM05D004635 ORTHO05D005899 2.5e-17 92.0 79 59.5
SalBow6G1328 Salvia bowleyana HOM05D004635 ORTHO05D005899 3.2e-17 91.7 85 57.6
Actinidia14552 Actinidia chinensis HOM05D004635 ORTHO05D005899 4.2e-17 91.3 79 59.5
COL.COLO4_34438 Corchorus olitorius HOM05D004635 ORTHO05D005899 4.2e-17 91.3 91 54.9
Gohir.D09G186900 Gossypium hirsutum HOM05D004635 ORTHO05D005899 4.2e-17 91.3 79 59.5
Gorai.006G209700 Gossypium raimondii HOM05D004635 ORTHO05D005899 4.2e-17 91.3 79 59.5
Prupe.5G097400 Prunus persica HOM05D004635 ORTHO05D005899 7.2e-17 90.5 85 57.6
TWI81G1014 Tripterygium wilfordii HOM05D004635 ORTHO05D005899 7.2e-17 90.5 87 59.8
Cfa012156 Carpinus fangiana HOM05D004635 ORTHO05D005899 9.5e-17 90.1 80 62.5
Nn5g27546 Nelumbo nucifera HOM05D004635 ORTHO05D005899 9.5e-17 90.1 79 57.0
TAR636G1354 Trochodendron aralioides HOM05D004635 ORTHO05D005899 1.2e-16 89.7 86 54.7
Potri.003G124700 Populus trichocarpa HOM05D004635 ORTHO05D005899 2.1e-16 89.0 87 58.6
Nn1g02763 Nelumbo nucifera HOM05D004635 ORTHO05D005899 2.8e-16 88.6 79 55.7
Sc01g0009470 Simmondsia chinensis HOM05D004635 ORTHO05D005899 2.8e-16 88.6 80 60.0
Haze_08871 Corylus avellana HOM05D004635 ORTHO05D005899 3.6e-16 88.2 90 58.9
Eucgr.E00572 Eucalyptus grandis HOM05D004635 ORTHO05D005899 3.6e-16 88.2 71 63.4
Migut.A00784 Erythranthe guttata HOM05D004635 ORTHO05D005899 6.1e-16 87.4 91 53.8
Sed0018462 Sechium edule HOM05D004635 ORTHO05D005899 6.1e-16 87.4 78 53.8
QL01p003129 Quercus lobata HOM05D004635 ORTHO05D005899 8.0e-16 87.0 82 57.3
ClCG01G002860 Citrullus lanatus HOM05D004635 ORTHO05D005899 1.4e-15 86.3 78 55.1
MD14G1101800 Malus domestica HOM05D004635 ORTHO05D005899 1.8e-15 85.9 86 53.5
Sabra03G0088200 Salix brachista HOM05D004635 ORTHO05D005899 4.0e-15 84.7 87 55.2
Psat7g034520 Pisum sativum HOM05D004635 ORTHO05D005899 5.2e-15 84.3 85 56.5
Medtr8g098490 Medicago truncatula HOM05D004635 ORTHO05D005899 6.8e-15 84.0 87 52.9
MBI18_g19087_MAGBIO Magnolia biondii HOM05D004635 ORTHO05D005899 8.8e-15 83.6 73 56.2
CANSAT78G0227 Cannabis sativa HOM05D004635 ORTHO05D005899 1.2e-14 83.2 87 56.3
Hund11485 Selenicereus undatus HOM05D004635 ORTHO05D005899 1.2e-14 83.2 79 57.0
THA.LOC104818064 Tarenaya hassleriana HOM05D004635 ORTHO05D005899 1.2e-14 83.2 77 57.1
Ca_17544_v3 Cicer arietinum L. HOM05D004635 ORTHO05D005899 1.5e-14 82.8 84 50.0
PSO017G3139 Papaver somniferum HOM05D004635 ORTHO05D005899 2.0e-14 82.4 82 57.3
Aqoxy5G04278 Aquilegia oxysepala HOM05D004635 ORTHO05D005899 3.4e-14 81.6 79 55.7
PSO170G0760 Papaver somniferum HOM05D004635 ORTHO05D005899 3.4e-14 81.6 82 57.3
CiPaw.11G137400 Carya illinoinensis HOM05D004635 ORTHO05D005899 4.4e-14 81.3 80 60.0
arahy.Tifrunner.gnm1.ann1.NB74KP Arachis hypogaea HOM05D004635 ORTHO05D005899 5.7e-14 80.9 79 55.7
arahy.Tifrunner.gnm1.ann1.Y4HLQF Arachis hypogaea HOM05D004635 ORTHO05D005899 7.5e-14 80.5 90 53.3
Cpa.g.sc202.13 Carica papaya HOM05D004635 ORTHO05D005899 7.5e-14 80.5 79 53.2
TPR.G12861 Trifolium pratense HOM05D004635 ORTHO05D005899 7.5e-14 80.5 90 54.4
PSO339G4625 Papaver somniferum HOM05D004635 ORTHO05D005899 9.8e-14 80.1 86 57.0
RcHm_v2.0_Chr2g0099081 Rosa chinensis HOM05D004635 ORTHO05D005899 1.3e-13 79.7 75 54.7
EL10Ac5g12781 Beta vulgaris HOM05D004635 ORTHO05D005899 1.7e-13 79.3 79 57.0
CARHR213190 Cardamine hirsuta HOM05D004635 ORTHO05D005899 1.7e-13 79.3 78 51.3
HanXRQChr13g0416481 Helianthus annuus HOM05D004635 ORTHO05D005899 2.2e-13 79.0 90 52.2
MELO3C005661.2 Cucumis melo HOM05D004635 ORTHO05D005899 2.8e-13 78.6 79 53.2
Cc08_g14490 Coffea canephora HOM05D004635 ORTHO05D005899 3.7e-13 78.2 89 50.6
PSO384G0809 Papaver somniferum HOM05D004635 ORTHO05D005899 4.9e-13 77.8 86 55.8
CsaV3_5G002950 Cucumis sativus L. HOM05D004635 ORTHO05D005899 6.3e-13 77.4 79 51.9
EL10Ac1g00317 Beta vulgaris HOM05D004635 ORTHO05D005899 1.1e-12 76.6 83 53.0
Manes.01G063000 Manihot esculenta HOM05D004635 ORTHO05D005899 1.4e-12 76.3 79 53.2
Sp7g00720 Schrenkiella parvula HOM05D004635 ORTHO05D005899 1.4e-12 76.3 71 57.7
SpUn0010_0200 Schrenkiella parvula HOM05D004635 ORTHO05D005899 1.4e-12 76.3 71 57.7
Aa31LG9G660 Aethionema arabicum HOM05D004635 ORTHO05D005899 2.4e-12 75.5 77 51.9
AUR62010616 Chenopodium quinoa HOM05D004635 ORTHO05D005899 2.4e-12 75.5 87 54.0
Lsat_1_v5_gn_6_87181 Lactuca sativa HOM05D004635 ORTHO05D005899 3.1e-12 75.1 88 51.1
Sed0015372 Sechium edule HOM05D004635 ORTHO05D005899 3.1e-12 75.1 81 55.6
GSVIVG01019776001 Vitis vinifera HOM05D004635 ORTHO05D005899 4.1e-12 74.7 48 75.0
AT5G41190 Arabidopsis thaliana HOM05D004635 ORTHO05D005899 5.4e-12 74.3 78 51.3
Thhalv10009994m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 7.0e-12 73.9 78 50.0
AL7G48240 Arabidopsis lyrata HOM05D004635 ORTHO05D005899 1.6e-11 72.8 78 48.7
Carub.0007s3429 Capsella rubella HOM05D004635 ORTHO05D005899 4.5e-11 71.2 77 48.1
arahy.Tifrunner.gnm1.ann1.BGY2GF Arachis hypogaea HOM05D004635 ORTHO05D005899 7.8e-11 70.5 79 53.2
arahy.Tifrunner.gnm1.ann1.MF5MQE Arachis hypogaea HOM05D004635 ORTHO05D005899 7.8e-11 70.5 79 53.2
unitig_37.g12250 Utricularia gibba HOM05D004635 ORTHO05D005899 7.8e-11 70.5 79 53.2
Thhalv10027696m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 1.7e-10 69.3 71 52.1
EL10Ac5g10794 Beta vulgaris HOM05D004635 ORTHO05D005899 2.3e-10 68.9 48 70.8
AUR62017259 Chenopodium quinoa HOM05D004635 ORTHO05D005899 2.9e-10 68.6 87 52.9
BcaB02g07904 Brassica carinata HOM05D004635 ORTHO05D005899 5.0e-10 67.8 55 58.2
BcaC08g44516 Brassica carinata HOM05D004635 ORTHO05D005899 5.0e-10 67.8 55 58.2
BcaC08g44517 Brassica carinata HOM05D004635 ORTHO05D005899 5.0e-10 67.8 55 58.2
CDE05G1698 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 6.6e-10 67.4 67 50.7
BcaB06g27604 Brassica carinata HOM05D004635 ORTHO05D005899 4.3e-09 64.7 54 59.3
BcaC02g08976 Brassica carinata HOM05D004635 ORTHO05D005899 4.3e-09 64.7 73 50.7
C04p48290 Brassica napus HOM05D004635 ORTHO05D005899 4.3e-09 64.7 73 50.7
BolC4t26422H Brassica oleracea HOM05D004635 ORTHO05D005899 4.3e-09 64.7 73 50.7
BraA07t29762Z Brassica rapa HOM05D004635 ORTHO05D005899 9.5e-09 63.5 49 59.2
CDE06G0591 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 2.1e-08 62.4 93 45.2
RcHm_v2.0_Chr7g0211961 Rosa chinensis HOM05D004635 ORTHO05D005899 2.1e-08 62.4 55 50.9
HPP92_020857 Vanilla planifolia HOM05D004635 ORTHO05D005899 2.8e-08 62.0 48 58.3
A07p20710 Brassica napus HOM05D004635 ORTHO05D005899 4.7e-08 61.2 50 56.0
Carub.0004s0410 Capsella rubella HOM05D004635 ORTHO05D005899 6.1e-08 60.8 74 44.6
SEGI_23350 Sequoiadendron giganteum HOM05D004635 ORTHO05D005899 8.0e-08 60.5 64 46.9
BolC6t37158H Brassica oleracea HOM05D004635 ORTHO05D005899 1.4e-07 59.7 65 47.7
ATR0064G111 Amborella trichopoda HOM05D004635 ORTHO05D005899 5.2e-07 57.8 79 50.6
A04p14360 Brassica napus HOM05D004635 ORTHO05D005899 1.5e-06 56.2 54 51.9
BraA04t17085Z Brassica rapa HOM05D004635 ORTHO05D005899 1.5e-06 56.2 54 51.9


User provided reference genes

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