Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A22G66 Lonicera japonica HOM05D003978 ORTHO05D015758 3.5e-89 331.6 172 100.0
Dinv41792 Davidia involucrata HOM05D003978 ORTHO05D006033 2.9e-27 125.9 237 40.5
DCAR_006405 Daucus carota HOM05D003978 ORTHO05D006033 3.7e-22 109.0 232 37.9
Lsat_1_v5_gn_2_113200 Lactuca sativa HOM05D003978 ORTHO05D006033 1.5e-20 103.6 250 38.4
CSS0034790 Camellia sinensis var. sinensis HOM05D003978 ORTHO05D006033 2.0e-20 103.2 245 36.3
CiPaw.02G171600 Carya illinoinensis HOM05D003978 ORTHO05D006033 3.8e-19 99.0 244 36.5
ECA238G2158 Erigeron canadensis HOM05D003978 ORTHO05D006033 3.8e-19 99.0 208 37.5
TPR.G26271 Trifolium pratense HOM05D003978 ORTHO05D006033 3.8e-19 99.0 238 37.4
Lj3A937G87 Lonicera japonica HOM05D003978 ORTHO05D006033 1.1e-18 97.4 255 32.9
Potri.010G228700 Populus trichocarpa HOM05D003978 ORTHO05D006033 1.4e-18 97.1 236 35.6
TAR633G1384 Trochodendron aralioides HOM05D003978 ORTHO05D006033 1.9e-18 96.7 240 35.8
arahy.Tifrunner.gnm1.ann1.3AH3YU Arachis hypogaea HOM05D003978 ORTHO05D006033 2.5e-18 96.3 235 36.2
TWI38G1352 Tripterygium wilfordii HOM05D003978 ORTHO05D006033 4.2e-18 95.5 239 37.2
Glyma.10G276500 Glycine max HOM05D003978 ORTHO05D006033 9.4e-18 94.4 231 35.5
Peaxi162Scf00253g00327 Petunia axillaris HOM05D003978 ORTHO05D006033 9.4e-18 94.4 189 40.2
TWI63G1197 Tripterygium wilfordii HOM05D003978 ORTHO05D006033 2.7e-17 92.8 238 35.3
PGSC0003DMG400016922 Solanum tuberosum HOM05D003978 ORTHO05D006033 6.1e-17 91.7 241 36.9
Migut.F01713 Erythranthe guttata HOM05D003978 ORTHO05D006033 7.9e-17 91.3 244 34.4
CANSAT64G1994 Cannabis sativa HOM05D003978 ORTHO05D006033 1.8e-16 90.1 190 35.3
CsaV3_5G036020 Cucumis sativus L. HOM05D001446 ORTHO05D001360 2.3e-16 89.7 244 35.7
Sabra10G0177400 Salix brachista HOM05D003978 ORTHO05D006033 2.3e-16 89.7 281 31.0
Ca_11194_v3 Cicer arietinum L. HOM05D003978 ORTHO05D006033 5.1e-16 88.6 235 36.2
CsaV3_2G021100 Cucumis sativus L. HOM05D003978 ORTHO05D006033 5.1e-16 88.6 244 33.6
Potri.008G033000 Populus trichocarpa HOM05D003978 ORTHO05D006033 5.1e-16 88.6 210 37.6
Sed0002426 Sechium edule HOM05D003978 ORTHO05D006033 5.1e-16 88.6 245 33.1
HanXRQChr14g0456531 Helianthus annuus HOM05D003978 ORTHO05D006033 6.7e-16 88.2 267 34.1
TAR623G0946 Trochodendron aralioides HOM05D003978 ORTHO05D006033 8.8e-16 87.8 249 36.1
Lj5g0022774 Lotus japonicus HOM05D003978 ORTHO05D006033 1.1e-15 87.4 237 33.3
Sopen03g019840 Solanum pennellii HOM05D003978 ORTHO05D006033 2.0e-15 86.7 232 38.4
GSVIVG01016195001 Vitis vinifera HOM05D003978 ORTHO05D006033 2.0e-15 86.7 250 32.8
Glyma.20G113200 Glycine max HOM05D003978 ORTHO05D006033 4.4e-15 85.5 240 34.2
MD01G1101500 Malus domestica HOM05D003978 ORTHO05D006033 4.4e-15 85.5 206 35.4
Nn6g35249 Nelumbo nucifera HOM05D003978 ORTHO05D006033 4.4e-15 85.5 239 36.4
VMungo0720G1413 Vigna mungo HOM05D003978 ORTHO05D006033 5.7e-15 85.1 234 32.9
MD07G1168200 Malus domestica HOM05D003978 ORTHO05D006033 9.7e-15 84.3 206 35.4
Solyc03g071560.4 Solanum lycopersicum HOM05D003978 ORTHO05D006033 1.3e-14 84.0 232 37.9
arahy.Tifrunner.gnm1.ann1.SNA779 Arachis hypogaea HOM05D003978 ORTHO05D006033 2.2e-14 83.2 274 31.4
Nitab4.5_0001450g0020 Nicotiana tabacum HOM05D003978 ORTHO05D006033 2.2e-14 83.2 255 30.6
CsaV3_2G020900 Cucumis sativus L. HOM05D003978 ORTHO05D006033 2.8e-14 82.8 232 32.8
PGR044G1831 Punica granatum HOM05D003978 ORTHO05D006033 4.8e-14 82.0 243 31.3
MBI04_g13679_MAGBIO Magnolia biondii HOM05D003978 ORTHO05D006033 1.8e-13 80.1 256 35.5
MSTRG.9145 Avicennia marina HOM05D003978 ORTHO05D006033 2.4e-13 79.7 246 34.1
Peaxi162Scf00145g00811 Petunia axillaris HOM05D003978 ORTHO05D006033 2.4e-13 79.7 236 35.2
ClCG05G021270 Citrullus lanatus HOM05D003978 ORTHO05D006033 4.1e-13 79.0 249 34.5
TWI15G0746 Tripterygium wilfordii HOM05D003978 ORTHO05D006033 4.1e-13 79.0 176 38.1
Cfa001800 Carpinus fangiana HOM05D003978 ORTHO05D006033 5.3e-13 78.6 243 32.9
Nitab4.5_0002285g0020 Nicotiana tabacum HOM05D003978 ORTHO05D006033 9.1e-13 77.8 255 32.5
Eucgr.J01044 Eucalyptus grandis HOM05D003978 ORTHO05D006033 1.2e-12 77.4 240 31.7
MSTRG.8127 Avicennia marina HOM05D003978 ORTHO05D006033 1.5e-12 77.0 210 34.3
Lalb_Chr03g0036261 Lupinus albus HOM05D003978 ORTHO05D006033 2.0e-12 76.6 174 36.2
Rhsim03G0089800 Rhododendron simsii HOM05D003978 ORTHO05D006033 2.0e-12 76.6 222 36.0
QL07p042820 Quercus lobata HOM05D003978 ORTHO05D006033 2.6e-12 76.3 235 32.8
Dinv37325 Davidia involucrata HOM05D006951 ORTHO05D008594 3.4e-12 75.9 232 33.2
TAR636G3645 Trochodendron aralioides HOM05D001807 ORTHO05D002044 1.3e-11 73.9 230 33.9
CiPaw.01G267500 Carya illinoinensis HOM05D003978 ORTHO05D006033 1.7e-11 73.6 233 34.8
QL08p053633 Quercus lobata HOM05D003978 ORTHO05D006033 1.7e-11 73.6 162 36.4
THA.LOC104823202 Tarenaya hassleriana HOM05D003978 ORTHO05D006033 3.8e-11 72.4 258 32.2
CSS0048765 Camellia sinensis var. sinensis HOM05D003978 ORTHO05D006033 8.5e-11 71.2 245 31.4
MELO3C012401.2 Cucumis melo HOM05D003978 ORTHO05D006033 8.5e-11 71.2 270 30.0
THA.LOC104816430 Tarenaya hassleriana HOM05D003978 ORTHO05D006033 8.5e-11 71.2 261 31.8
Ciclev10032520m.g Citrus clementina HOM05D003978 ORTHO05D006033 2.5e-10 69.7 170 39.4
SEGI_04637 Sequoiadendron giganteum HOM05D003978 ORTHO05D006033 3.2e-10 69.3 178 33.7
Thecc.10G086400 Theobroma cacao HOM05D003978 ORTHO05D006033 3.2e-10 69.3 234 35.5
PSO339G1141 Papaver somniferum HOM05D003978 ORTHO05D006033 4.2e-10 68.9 210 33.8
Manes.10G051200 Manihot esculenta HOM05D003978 ORTHO05D006033 7.2e-10 68.2 160 36.9
Oeu013852.1 Olea europaea HOM05D003978 ORTHO05D015758 7.2e-10 68.2 38 78.9
Cfa017638 Carpinus fangiana HOM05D003978 ORTHO05D006033 9.4e-10 67.8 229 32.8
Cc02_g10780 Coffea canephora HOM05D003978 ORTHO05D015758 2.1e-09 66.6 45 68.9
RcHm_v2.0_Chr1g0362301 Rosa chinensis HOM05D003978 ORTHO05D006033 2.1e-09 66.6 208 31.2
PSO801G0725 Papaver somniferum HOM05D003978 ORTHO05D006033 2.7e-09 66.2 202 32.2
THA.LOC104809978 Tarenaya hassleriana HOM05D003978 ORTHO05D006033 2.7e-09 66.2 245 29.8
CSS0027147 Camellia sinensis var. sinensis HOM05D003978 ORTHO05D006033 6.1e-09 65.1 195 34.4
HPP92_017522 Vanilla planifolia HOM05D003978 ORTHO05D006033 1.4e-08 63.9 204 31.9
SEGI_12114 Sequoiadendron giganteum HOM05D003978 ORTHO05D006033 1.8e-08 63.5 226 35.4
Aqoxy2G01695 Aquilegia oxysepala HOM05D003978 ORTHO05D006033 3.9e-08 62.4 177 33.9
CDE09G0059 Ceratophyllum demersum HOM05D000278 ORTHO05D004673 3.9e-08 62.4 173 31.8
Sopen11g003980 Solanum pennellii HOM05D003978 ORTHO05D006033 5.2e-08 62.0 275 26.2
FvH4_7g18520 Fragaria vesca HOM05D003978 ORTHO05D006033 6.7e-08 61.6 208 29.3
Oeu007407.1 Olea europaea HOM05D003978 ORTHO05D006033 6.7e-08 61.6 227 29.5
vmacro07118 Vaccinium macrocarpon HOM05D003978 ORTHO05D006033 8.8e-08 61.2 142 38.7
Nitab4.5_0001359g0090 Nicotiana tabacum HOM05D003978 ORTHO05D006033 1.1e-07 60.8 231 31.6
Duzib128G0911 Durio zibethinus HOM05D003978 ORTHO05D006033 1.5e-07 60.5 59 61.0
PGSC0003DMG400031080 Solanum tuberosum HOM05D003978 ORTHO05D006033 2.0e-07 60.1 290 25.5
Gohir.D10G209000 Gossypium hirsutum HOM05D003978 ORTHO05D006033 2.6e-07 59.7 93 45.2
Gorai.011G235100 Gossypium raimondii HOM05D003978 ORTHO05D006033 2.6e-07 59.7 93 45.2
EL10Ac7g16661 Beta vulgaris HOM05D003978 ORTHO05D006033 3.3e-07 59.3 176 33.0
AUR62026923 Chenopodium quinoa HOM05D003978 ORTHO05D006033 3.3e-07 59.3 192 34.9
CANSAT80G2867 Cannabis sativa HOM05D003978 ORTHO05D006033 4.4e-07 58.9 218 30.7
Sed0020000 Sechium edule HOM05D003978 ORTHO05D006033 4.4e-07 58.9 45 66.7
Ah.08g211530 Amaranthus hybridus HOM05D003978 ORTHO05D006033 5.7e-07 58.5 234 29.1
AUR62042058 Chenopodium quinoa HOM05D003978 ORTHO05D006033 5.7e-07 58.5 197 31.0
Duzib114G0897 Durio zibethinus HOM05D003978 ORTHO05D006033 5.7e-07 58.5 155 34.2
Sabra08G0021900 Salix brachista HOM05D003978 ORTHO05D006033 5.7e-07 58.5 158 33.5
GSVIVG01033666001 Vitis vinifera HOM05D003978 ORTHO05D000124 7.4e-07 58.2 92 41.3
Thhalv10023624m.g Eutrema salsugineum HOM05D003978 ORTHO05D006033 9.7e-07 57.8 141 34.0
Rhsim03G0115000 Rhododendron simsii HOM05D003978 ORTHO05D006033 9.7e-07 57.8 60 63.3
Sp2g04070 Schrenkiella parvula HOM05D003978 ORTHO05D006033 9.7e-07 57.8 84 41.7
Carub.0002s0468 Capsella rubella HOM05D003978 ORTHO05D006033 1.7e-06 57.0 148 35.1
Cpa.g.sc53.146 Carica papaya HOM05D003978 ORTHO05D015758 1.7e-06 57.0 38 76.3
SGA_v2.0_scaffold51G18710 Striga asiatica HOM05D003978 ORTHO05D006033 1.7e-06 57.0 38 68.4
Cc02_g10770 Coffea canephora HOM05D003978 ORTHO05D006033 2.2e-06 56.6 166 34.3
AL2G15940 Arabidopsis lyrata HOM05D003978 ORTHO05D006033 4.8e-06 55.5 161 33.5
Sp6g38470 Schrenkiella parvula HOM05D003978 ORTHO05D006033 4.8e-06 55.5 142 34.5
ATR0665G443 Amborella trichopoda HOM05D003978 ORTHO05D015758 6.3e-06 55.1 38 73.7
AL6G13910 Arabidopsis lyrata HOM05D003978 ORTHO05D006033 8.2e-06 54.7 188 31.4
CARHR052280 Cardamine hirsuta HOM05D003978 ORTHO05D006033 8.2e-06 54.7 127 34.6


User provided reference genes

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