Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A182G26 Lonicera japonica HOM05D001758 ORTHO05D023731 1.7e-82 309.3 162 100.0
Lj8A218T22 Lonicera japonica HOM05D001758 ORTHO05D004430 6.7e-50 201.1 174 66.1
CSS0038252 Camellia sinensis var. sinensis HOM05D001758 ORTHO05D004430 1.1e-49 200.3 170 71.8
CSS0042527 Camellia sinensis var. sinensis HOM05D001758 ORTHO05D004430 1.1e-49 200.3 170 71.8
Cc08_g15000 Coffea canephora HOM05D001758 ORTHO05D004430 5.7e-49 198.0 171 66.7
MSTRG.1854 Avicennia marina HOM05D001758 ORTHO05D004430 2.2e-48 196.1 170 65.3
Oeu011033.1 Olea europaea HOM05D001758 ORTHO05D004430 1.8e-47 193.0 170 64.7
CSS0019297 Camellia sinensis var. sinensis HOM05D001758 ORTHO05D004430 3.1e-47 192.2 169 68.6
HanXRQChr13g0416041 Helianthus annuus HOM05D001758 ORTHO05D004430 3.1e-47 192.2 164 67.1
CSS0009285 Camellia sinensis var. sinensis HOM05D001758 ORTHO05D004430 4.1e-47 191.8 169 68.6
Migut.E01190 Erythranthe guttata HOM05D001758 ORTHO05D004430 4.1e-47 191.8 166 67.5
vmacro13195 Vaccinium macrocarpon HOM05D001758 ORTHO05D004430 5.3e-47 191.4 172 67.4
MBI07_g21076_MAGBIO Magnolia biondii HOM05D001758 ORTHO05D004430 9.0e-47 190.7 170 65.3
PGSC0003DMG400012194 Solanum tuberosum HOM05D001758 ORTHO05D004430 1.2e-46 190.3 162 66.0
ECA233G5934 Erigeron canadensis HOM05D001758 ORTHO05D004430 2.6e-46 189.1 170 68.8
SalBow1G0547 Salvia bowleyana HOM05D001758 ORTHO05D004430 4.5e-46 188.3 166 66.3
HanXRQChr13g0394171 Helianthus annuus HOM05D001758 ORTHO05D004430 5.9e-46 188.0 165 64.8
FAN04G0007 Fragaria x ananassa HOM05D001758 ORTHO05D004430 7.7e-46 187.6 175 67.4
FAN18G3406 Fragaria x ananassa HOM05D001758 ORTHO05D004430 7.7e-46 187.6 175 67.4
FAN08G0671 Fragaria x ananassa HOM05D001758 ORTHO05D004430 1.0e-45 187.2 175 66.9
FAN13G1114 Fragaria x ananassa HOM05D001758 ORTHO05D004430 1.3e-45 186.8 175 67.4
AUR62010715 Chenopodium quinoa HOM05D001758 ORTHO05D004430 1.7e-45 186.4 159 65.4
RcHm_v2.0_Chr7g0197091 Rosa chinensis HOM05D001758 ORTHO05D004430 1.7e-45 186.4 172 67.4
Prupe.5G103900 Prunus persica HOM05D001758 ORTHO05D004430 3.8e-45 185.3 174 63.2
Sopen08g029630 Solanum pennellii HOM05D001758 ORTHO05D004430 5.0e-45 184.9 165 64.8
SGA_v2.0_scaffold48G18078 Striga asiatica HOM05D001758 ORTHO05D004430 5.0e-45 184.9 166 68.1
Solyc08g081320.3 Solanum lycopersicum HOM05D001758 ORTHO05D004430 6.5e-45 184.5 165 64.8
Rhsim07G0088700 Rhododendron simsii HOM05D001758 ORTHO05D004430 1.9e-44 183.0 165 67.9
MD14G1108600 Malus domestica HOM05D001758 ORTHO05D004430 2.5e-44 182.6 173 65.3
THA.LOC104806416 Tarenaya hassleriana HOM05D001758 ORTHO05D004430 2.5e-44 182.6 166 62.0
SGA_v2.0_scaffold144G35913 Striga asiatica HOM05D001758 ORTHO05D004430 3.2e-44 182.2 152 68.4
QL12p032420 Quercus lobata HOM05D001758 ORTHO05D004430 4.2e-44 181.8 171 64.3
Hund14840 Selenicereus undatus HOM05D001758 ORTHO05D004430 4.2e-44 181.8 166 62.7
ClCG01G002530 Citrullus lanatus HOM05D001758 ORTHO05D004430 5.5e-44 181.4 171 64.9
CANSAT21G2030 Cannabis sativa HOM05D001758 ORTHO05D004430 7.2e-44 181.0 179 63.1
MELO3C005693.2 Cucumis melo HOM05D001758 ORTHO05D004430 7.2e-44 181.0 171 65.5
Lsat_1_v5_gn_6_86320 Lactuca sativa HOM05D001758 ORTHO05D004430 7.2e-44 181.0 163 66.3
CsaV3_5G002640 Cucumis sativus L. HOM05D001758 ORTHO05D004430 9.4e-44 180.6 171 64.3
THA.LOC104813023 Tarenaya hassleriana HOM05D001758 ORTHO05D004430 9.4e-44 180.6 161 62.7
Actinidia14582 Actinidia chinensis HOM05D001758 ORTHO05D004430 1.2e-43 180.3 172 61.6
COL.COLO4_34497 Corchorus olitorius HOM05D001758 ORTHO05D004430 1.6e-43 179.9 170 61.8
FvH4_5g02830 Fragaria vesca HOM05D001758 ORTHO05D004430 1.6e-43 179.9 175 65.7
Sabra01G0076400 Salix brachista HOM05D001758 ORTHO05D004430 2.1e-43 179.5 173 61.8
A09p27770 Brassica napus HOM05D001758 ORTHO05D004430 4.6e-43 178.3 169 63.3
BraA09t38347Z Brassica rapa HOM05D001758 ORTHO05D004430 4.6e-43 178.3 169 63.3
Peaxi162Scf00074g02036 Petunia axillaris HOM05D001758 ORTHO05D004430 4.6e-43 178.3 168 63.1
Potri.001G101400 Populus trichocarpa HOM05D001758 ORTHO05D004430 4.6e-43 178.3 173 60.7
Cfa012203 Carpinus fangiana HOM05D001758 ORTHO05D004430 6.1e-43 177.9 161 62.1
MD06G1087800 Malus domestica HOM05D001758 ORTHO05D004430 6.1e-43 177.9 176 63.1
BcaC04g21134 Brassica carinata HOM05D001758 ORTHO05D004430 7.9e-43 177.6 169 63.3
C09p35180 Brassica napus HOM05D001758 ORTHO05D004430 7.9e-43 177.6 169 63.3
BolC9t56364H Brassica oleracea HOM05D001758 ORTHO05D004430 7.9e-43 177.6 169 63.3
Lalb_Chr05g0211451 Lupinus albus HOM05D001758 ORTHO05D004430 7.9e-43 177.6 169 60.9
Potri.003G130400 Populus trichocarpa HOM05D001758 ORTHO05D004430 7.9e-43 177.6 171 60.8
CARHR255190 Cardamine hirsuta HOM05D001758 ORTHO05D004430 1.0e-42 177.2 169 62.7
ClCG02G002170 Citrullus lanatus HOM05D001758 ORTHO05D004430 1.0e-42 177.2 172 60.5
Sabra03G0092700 Salix brachista HOM05D001758 ORTHO05D004430 1.0e-42 177.2 172 61.0
Dinv38922 Davidia involucrata HOM05D001758 ORTHO05D004430 1.4e-42 176.8 140 72.1
Duzib084G0730 Durio zibethinus HOM05D001758 ORTHO05D004430 1.4e-42 176.8 177 60.5
Nitab4.5_0001522g0060 Nicotiana tabacum HOM05D001758 ORTHO05D004430 1.4e-42 176.8 168 62.5
Phvul.002G034100 Phaseolus vulgaris HOM05D001758 ORTHO05D004430 1.4e-42 176.8 170 60.0
MBI10_g48303_MAGBIO Magnolia biondii HOM05D001758 ORTHO05D004430 1.8e-42 176.4 170 62.4
AT4G23460 Arabidopsis thaliana HOM05D001758 ORTHO05D004430 2.3e-42 176.0 162 62.3
ECA240G1636 Erigeron canadensis HOM05D001758 ORTHO05D004430 2.3e-42 176.0 150 66.7
Duzib205G0508 Durio zibethinus HOM05D001758 ORTHO05D004430 3.0e-42 175.6 175 60.0
Nitab4.5_0002975g0020 Nicotiana tabacum HOM05D001758 ORTHO05D004430 3.0e-42 175.6 168 61.9
Sed0001016 Sechium edule HOM05D001758 ORTHO05D004430 3.0e-42 175.6 173 61.8
Gohir.A03G019300 Gossypium hirsutum HOM05D001758 ORTHO05D004430 3.9e-42 175.3 171 60.2
Gorai.003G157000 Gossypium raimondii HOM05D001758 ORTHO05D004430 3.9e-42 175.3 171 60.2
TAR625G0205 Trochodendron aralioides HOM05D001758 ORTHO05D004430 3.9e-42 175.3 173 60.7
AUR62027253 Chenopodium quinoa HOM05D001758 ORTHO05D004430 5.1e-42 174.9 159 61.6
Eucgr.D01829 Eucalyptus grandis HOM05D001758 ORTHO05D004430 5.1e-42 174.9 168 61.9
Thhalv10028407m.g Eutrema salsugineum HOM05D001758 ORTHO05D004430 5.1e-42 174.9 169 62.1
Aqoxy5G01113 Aquilegia oxysepala HOM05D001758 ORTHO05D004430 6.7e-42 174.5 173 61.3
CiPaw.12G091200 Carya illinoinensis HOM05D001758 ORTHO05D004430 6.7e-42 174.5 173 60.1
Thhalv10024360m.g Eutrema salsugineum HOM05D001758 ORTHO05D004430 6.7e-42 174.5 165 61.8
Actinidia33743 Actinidia chinensis HOM05D001758 ORTHO05D004430 8.8e-42 174.1 169 63.3
Aa31LG6G6650 Aethionema arabicum HOM05D001758 ORTHO05D004430 8.8e-42 174.1 163 62.6
AL7G30000 Arabidopsis lyrata HOM05D001758 ORTHO05D004430 8.8e-42 174.1 162 61.7
Carub.0007s1765 Capsella rubella HOM05D001758 ORTHO05D004430 8.8e-42 174.1 162 61.7
Thecc.03G282700 Theobroma cacao HOM05D001758 ORTHO05D004430 8.8e-42 174.1 173 60.1
Gohir.D03G149700 Gossypium hirsutum HOM05D001758 ORTHO05D004430 1.1e-41 173.7 171 59.6
Lj3g0022998 Lotus japonicus HOM05D001758 ORTHO05D004430 1.1e-41 173.7 167 61.1
Sp6g06070 Schrenkiella parvula HOM05D001758 ORTHO05D004430 1.5e-41 173.3 169 61.5
Sed0023378 Sechium edule HOM05D001758 ORTHO05D004430 2.0e-41 172.9 172 61.0
TPR.G22570 Trifolium pratense HOM05D001758 ORTHO05D004430 2.0e-41 172.9 163 61.3
Atru.chr9.2154 Acer truncatum HOM05D001758 ORTHO05D004430 2.5e-41 172.6 177 60.5
Haze_08813 Corylus avellana HOM05D001758 ORTHO05D004430 3.3e-41 172.2 169 60.4
DCAR_005564 Daucus carota HOM05D001758 ORTHO05D004430 4.3e-41 171.8 152 67.1
arahy.Tifrunner.gnm1.ann1.KK02P6 Arachis hypogaea HOM05D001758 ORTHO05D004430 5.7e-41 171.4 163 62.6
Sc01g0009710 Simmondsia chinensis HOM05D001758 ORTHO05D004430 5.7e-41 171.4 179 60.3
TWI60G1699 Tripterygium wilfordii HOM05D001758 ORTHO05D004430 5.7e-41 171.4 169 63.3
vmacro13146 Vaccinium macrocarpon HOM05D001758 ORTHO05D004430 5.7e-41 171.4 166 63.3
MELO3C018841.2 Cucumis melo HOM05D001758 ORTHO05D004430 7.4e-41 171.0 174 58.6
AL6G45790 Arabidopsis lyrata HOM05D001758 ORTHO05D004430 1.3e-40 170.2 169 62.1
Medtr4g076210 Medicago truncatula HOM05D001758 ORTHO05D004430 1.3e-40 170.2 168 59.5
Oeu007743.2 Olea europaea HOM05D001758 ORTHO05D004430 1.3e-40 170.2 162 57.4
Ciclev10018786m.g Citrus clementina HOM05D001758 ORTHO05D004430 1.7e-40 169.9 168 59.5
arahy.Tifrunner.gnm1.ann1.AY0C6D Arachis hypogaea HOM05D001758 ORTHO05D004430 2.2e-40 169.5 163 62.6
Os03g0355600 Oryza sativa ssp. japonica HOM05D001758 ORTHO05D004430 2.2e-40 169.5 168 61.3
Phvul.011G078200 Phaseolus vulgaris HOM05D001758 ORTHO05D004430 2.8e-40 169.1 166 60.2
EL10Ac5g12803 Beta vulgaris HOM05D001758 ORTHO05D004430 3.7e-40 168.7 166 60.8
Cpa.g.sc180.11 Carica papaya HOM05D001758 ORTHO05D004430 3.7e-40 168.7 165 62.4
Gohir.A08G184000 Gossypium hirsutum HOM05D001758 ORTHO05D004430 3.7e-40 168.7 170 60.0
HPP92_008911 Vanilla planifolia HOM05D001758 ORTHO05D004430 3.7e-40 168.7 173 59.0
THA.LOC104814663 Tarenaya hassleriana HOM05D001758 ORTHO05D004430 6.3e-40 167.9 162 61.1
GSVIVG01019391001 Vitis vinifera HOM05D001758 ORTHO05D004430 6.3e-40 167.9 174 58.6
CAN.G532.6 Capsicum annuum HOM05D001758 ORTHO05D004430 8.2e-40 167.5 160 61.2
Glyma.01G227000 Glycine max HOM05D001758 ORTHO05D004430 8.2e-40 167.5 162 60.5
VMungo1127G1185 Vigna mungo HOM05D001758 ORTHO05D004430 8.2e-40 167.5 166 59.0
Glyma.11G015700 Glycine max HOM05D001758 ORTHO05D004430 1.1e-39 167.2 169 59.8
BcaB01g01638 Brassica carinata HOM05D001758 ORTHO05D004430 1.4e-39 166.8 169 60.9
Gohir.D08G202500 Gossypium hirsutum HOM05D001758 ORTHO05D004430 1.4e-39 166.8 173 59.5
Manes.02G136100 Manihot esculenta HOM05D001758 ORTHO05D004430 1.4e-39 166.8 173 59.5
Zm00001eb394540 Zea mays HOM05D001758 ORTHO05D004430 1.8e-39 166.4 170 57.6
CsaV3_7G003330 Cucumis sativus L. HOM05D001758 ORTHO05D004430 2.4e-39 166.0 177 57.6
Zm00001eb017130 Zea mays HOM05D001758 ORTHO05D004430 2.4e-39 166.0 168 60.1
ATR0329G044 Amborella trichopoda HOM05D001758 ORTHO05D004430 3.1e-39 165.6 173 60.1
Sp7g21360 Schrenkiella parvula HOM05D001758 ORTHO05D004430 3.1e-39 165.6 165 60.0
Aa31LG9G10850 Aethionema arabicum HOM05D001758 ORTHO05D004430 4.1e-39 165.2 169 60.4
Glyma.12G021600 Glycine max HOM05D001758 ORTHO05D004430 4.1e-39 165.2 167 56.9
Lsat_1_v5_gn_6_5441 Lactuca sativa HOM05D001758 ORTHO05D004430 4.1e-39 165.2 163 58.9
Psat7g179680 Pisum sativum HOM05D001758 ORTHO05D004430 4.1e-39 165.2 169 59.8
Gorai.004G213900 Gossypium raimondii HOM05D001758 ORTHO05D004430 5.3e-39 164.9 173 59.5
Nn6g31920 Nelumbo nucifera HOM05D001758 ORTHO05D004430 6.9e-39 164.5 170 57.1
Nn5g30834 Nelumbo nucifera HOM05D001758 ORTHO05D004430 1.5e-38 163.3 173 56.6
Carub.0006s3029 Capsella rubella HOM05D001758 ORTHO05D004430 2.0e-38 162.9 169 59.2
VMungo1215G2939 Vigna mungo HOM05D001758 ORTHO05D004430 2.0e-38 162.9 168 58.3
CDE08G1656 Ceratophyllum demersum HOM05D001758 ORTHO05D004430 2.6e-38 162.5 164 62.2
SEGI_36929 Sequoiadendron giganteum HOM05D001758 ORTHO05D004430 2.6e-38 162.5 167 60.5
BcaNung04480 Brassica carinata HOM05D001758 ORTHO05D004430 3.4e-38 162.2 163 60.7
Lsat_1_v5_gn_3_6140 Lactuca sativa HOM05D001758 ORTHO05D004430 4.5e-38 161.8 165 58.8
Ah.07g196400 Amaranthus hybridus HOM05D001758 ORTHO05D004430 7.7e-38 161.0 141 64.5
Lalb_Chr16g0376841 Lupinus albus HOM05D001758 ORTHO05D004430 7.7e-38 161.0 169 56.8
SHI07182 Sapria himalayana HOM05D000105 ORTHO05D000023 7.7e-38 161.0 162 59.3
AT4G11380 Arabidopsis thaliana HOM05D001758 ORTHO05D004430 1.7e-37 159.8 164 60.4
A03p54320 Brassica napus HOM05D001758 ORTHO05D004430 5.0e-37 158.3 163 61.3
C07p52720 Brassica napus HOM05D001758 ORTHO05D004430 5.0e-37 158.3 163 61.3
BolC7t45772H Brassica oleracea HOM05D001758 ORTHO05D004430 5.0e-37 158.3 163 61.3
BraA03t14494Z Brassica rapa HOM05D001758 ORTHO05D004430 5.0e-37 158.3 163 61.3
PSO541G5667 Papaver somniferum HOM05D001758 ORTHO05D004430 5.0e-37 158.3 172 56.4
PSO675G0536 Papaver somniferum HOM05D001758 ORTHO05D004430 6.5e-37 157.9 174 55.7
AagrBONN_evm.TU.Sc2ySwM_117.2557 Anthoceros agrestis HOM05D001758 ORTHO05D004430 1.9e-36 156.4 180 55.6
Pp3c14_2460 Physcomitrium patens HOM05D001758 ORTHO05D004430 3.2e-36 155.6 165 57.0
SMO298G0016 Selaginella moellendorffii HOM05D001758 ORTHO05D004430 3.9e-34 148.7 148 59.5
CDE02G4367 Ceratophyllum demersum HOM05D001758 ORTHO05D004430 8.8e-34 147.5 161 55.3
Pp3c2_18140 Physcomitrium patens HOM05D001758 ORTHO05D004430 7.4e-33 144.4 166 55.4
Pp3c1_19340 Physcomitrium patens HOM05D001758 ORTHO05D004430 1.7e-32 143.3 159 57.9
Mapoly0002s0295 Marchantia polymorpha HOM05D001758 ORTHO05D004430 3.7e-32 142.1 98 72.4
CBR_g10902 Chara braunii HOM05D001758 ORTHO05D004430 5.3e-31 138.3 185 50.3
PRCOL_00003609 Prasinoderma coloniale HOM05D001758 ORTHO05D004430 3.6e-27 125.6 149 53.0
unitig_62.g23539 Utricularia gibba HOM05D001758 ORTHO05D004430 2.0e-25 119.8 76 78.9
Glyma.11G095501 Glycine max HOM05D001758 ORTHO05D004430 2.4e-23 112.8 130 54.6
Actinidia36812 Actinidia chinensis HOM05D001758 ORTHO05D023347 7.0e-23 111.3 80 72.5
MBI10_g48086_MAGBIO Magnolia biondii HOM05D001758 ORTHO05D004430 7.0e-23 111.3 179 48.0
arahy.Tifrunner.gnm1.ann1.BNAN0X Arachis hypogaea HOM05D001758 ORTHO05D023731 3.8e-21 105.5 133 56.4
Cre11.g478156 Chlamydomonas reinhardtii HOM05D001758 ORTHO05D004430 2.5e-20 102.8 94 57.4
Lalb_Chr09g0320541 Lupinus albus HOM05D001758 ORTHO05D023731 6.1e-19 98.2 65 72.3
CARHR230790 Cardamine hirsuta HOM05D001758 ORTHO05D023731 8.8e-18 94.4 125 48.8
arahy.Tifrunner.gnm1.ann1.Z0QB2S Arachis hypogaea HOM05D001758 ORTHO05D023731 1.3e-16 90.5 73 64.4
CAN.G491.13 Capsicum annuum HOM05D001758 ORTHO05D018856 3.7e-16 89.0 129 47.3
MCO01G139 Micromonas commoda HOM05D001758 ORTHO05D004430 1.4e-15 87.0 87 51.7
CAN.G849.10 Capsicum annuum HOM05D001758 ORTHO05D004430 1.8e-15 86.7 67 67.2
Cfa025216 Carpinus fangiana HOM05D001758 ORTHO05D004430 3.1e-15 85.9 98 46.9
Oeu042339.1 Olea europaea HOM05D001758 ORTHO05D004430 1.2e-14 84.0 167 40.7
CAN.G205.21 Capsicum annuum HOM05D001758 ORTHO05D018856 2.3e-10 69.7 123 42.3
Cfa024790 Carpinus fangiana HOM05D001758 ORTHO05D004430 9.8e-09 64.3 105 38.1
DCAR_008367 Daucus carota HOM05D001758 ORTHO05D004430 1.3e-08 63.9 92 45.7
CAN.G453.6 Capsicum annuum HOM05D001758 ORTHO05D018856 4.9e-08 62.0 94 44.7
arahy.Tifrunner.gnm1.ann1.BTFJ3K Arachis hypogaea HOM05D001758 ORTHO05D082785 1.2e-06 57.4 98 43.9
CAN.G453.10 Capsicum annuum HOM05D001758 ORTHO05D018856 1.6e-06 57.0 103 41.7


User provided reference genes

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