Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A1055T49 Lonicera japonica HOM05D006496 ORTHO05D008390 2.0e-223 778.9 419 100.0
CSS0042381 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 8.0e-55 218.8 427 35.8
Sopen11g030740 Solanum pennellii HOM05D006496 ORTHO05D008390 4.0e-54 216.5 294 47.3
Lsat_1_v5_gn_5_167360 Lactuca sativa HOM05D006496 ORTHO05D008390 1.2e-53 214.9 404 35.4
Cc01_g12300 Coffea canephora HOM05D006496 ORTHO05D008390 4.4e-53 213.0 320 40.3
Actinidia37238 Actinidia chinensis HOM05D006496 ORTHO05D008390 9.8e-53 211.8 425 35.5
CAN.G420.5 Capsicum annuum HOM05D006496 ORTHO05D008390 2.9e-52 210.3 279 44.8
CSS0000664 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 8.3e-52 208.8 279 44.8
SalBow3G1961 Salvia bowleyana HOM05D006496 ORTHO05D008390 1.9e-51 207.6 296 42.2
ECA248G1113 Erigeron canadensis HOM05D006496 ORTHO05D008390 5.4e-51 206.1 447 33.1
Oeu058535.1 Olea europaea HOM05D006496 ORTHO05D008390 3.3e-48 196.8 280 41.4
vmacro03111 Vaccinium macrocarpon HOM05D006496 ORTHO05D008390 1.6e-47 194.5 440 33.0
Rhsim13G0086700 Rhododendron simsii HOM05D006496 ORTHO05D008390 3.1e-46 190.3 303 39.6
Nitab4.5_0009215g0030 Nicotiana tabacum HOM05D006496 ORTHO05D008390 6.8e-46 189.1 421 34.7
Nitab4.5_0003498g0030 Nicotiana tabacum HOM05D006496 ORTHO05D008390 7.5e-45 185.7 274 43.1
Migut.D02127 Erythranthe guttata HOM05D006496 ORTHO05D008390 6.4e-44 182.6 284 42.3
Actinidia07064 Actinidia chinensis HOM05D006496 ORTHO05D008390 2.1e-42 177.6 272 42.3
HanXRQChr04g0106921 Helianthus annuus HOM05D006496 ORTHO05D008390 7.3e-40 169.1 307 36.8
Peaxi162Scf00411g00117 Petunia axillaris HOM05D006496 ORTHO05D008390 8.1e-39 165.6 166 56.6
PGSC0003DMG400015535 Solanum tuberosum HOM05D006496 ORTHO05D008390 8.9e-38 162.2 199 48.7
HanXRQChr01g0009851 Helianthus annuus HOM05D006496 ORTHO05D008390 2.6e-37 160.6 273 35.5
ECA247G0375 Erigeron canadensis HOM05D006496 ORTHO05D008390 3.7e-36 156.8 335 33.4
Hma1.2p1_0035F.1_g022050 Hydrangea macrophylla HOM05D006496 ORTHO05D008390 1.4e-35 154.8 290 34.5
Lsat_1_v5_gn_9_22140 Lactuca sativa HOM05D006496 ORTHO05D008390 2.4e-35 154.1 289 36.7
Solyc11g073080.3 Solanum lycopersicum HOM05D006496 ORTHO05D008390 3.2e-35 153.7 187 50.8
SGA_v2.0_scaffold61G21263 Striga asiatica HOM05D006496 ORTHO05D008390 4.1e-35 153.3 270 34.8
HanXRQChr01g0009831 Helianthus annuus HOM05D006496 ORTHO05D008390 5.4e-35 152.9 308 32.8
AUR62001835 Chenopodium quinoa HOM05D006496 ORTHO05D008390 2.1e-34 151.0 300 33.0
AUR62009623 Chenopodium quinoa HOM05D006496 ORTHO05D008390 2.1e-34 151.0 302 33.1
Dinv06145 Davidia involucrata HOM05D006496 ORTHO05D008390 7.8e-34 149.1 180 49.4
Hund04996 Selenicereus undatus HOM05D006496 ORTHO05D008390 1.9e-32 144.4 298 32.2
QL01p033240 Quercus lobata HOM05D006496 ORTHO05D008390 3.3e-32 143.7 287 35.9
QL01p033291 Quercus lobata HOM05D006496 ORTHO05D008390 3.3e-32 143.7 287 35.9
DCAR_018892 Daucus carota HOM05D006496 ORTHO05D008390 1.1e-30 138.7 242 36.8
MD03G1099500 Malus domestica HOM05D006496 ORTHO05D008390 6.8e-30 136.0 294 32.0
Ah.08g218920 Amaranthus hybridus HOM05D006496 ORTHO05D008390 3.4e-29 133.7 298 29.5
Prupe.6G084300 Prunus persica HOM05D006496 ORTHO05D008390 4.4e-29 133.3 284 33.1
AL8G36350 Arabidopsis lyrata HOM05D006496 ORTHO05D008390 9.9e-29 132.1 403 28.3
Ciclev10028859m.g Citrus clementina HOM05D006496 ORTHO05D008390 9.9e-29 132.1 297 29.6
MSTRG.21183 Avicennia marina HOM05D006496 ORTHO05D008390 1.3e-28 131.7 166 48.2
GSVIVG01025031001 Vitis vinifera HOM05D006496 ORTHO05D008390 2.9e-28 130.6 271 32.8
CARHR273380 Cardamine hirsuta HOM05D006496 ORTHO05D008390 3.8e-28 130.2 408 26.5
RcHm_v2.0_Chr5g0062931 Rosa chinensis HOM05D006496 ORTHO05D008390 4.9e-28 129.8 277 30.7
BcaB08g36218 Brassica carinata HOM05D006496 ORTHO05D008390 8.4e-28 129.0 418 27.0
Carub.0008s2046 Capsella rubella HOM05D006496 ORTHO05D008390 8.4e-28 129.0 403 26.8
Sp6g21470 Schrenkiella parvula HOM05D006496 ORTHO05D008390 8.4e-28 129.0 425 27.3
MD03G1099400 Malus domestica HOM05D006496 ORTHO05D008390 1.1e-27 128.6 284 31.7
FAN25G3002 Fragaria x ananassa HOM05D006496 ORTHO05D008390 3.2e-27 127.1 276 31.9
FAN21G2388 Fragaria x ananassa HOM05D006496 ORTHO05D008390 5.4e-27 126.3 295 30.8
MD11G1113700 Malus domestica HOM05D006496 ORTHO05D008390 5.4e-27 126.3 305 32.1
RcHm_v2.0_Chr5g0062921 Rosa chinensis HOM05D006496 ORTHO05D008390 7.1e-27 125.9 273 31.1
Thhalv10014093m.g Eutrema salsugineum HOM05D006496 ORTHO05D008390 9.2e-27 125.6 426 25.6
BolC9t58098H Brassica oleracea HOM05D006496 ORTHO05D008390 1.6e-26 124.8 418 27.0
AT5G59800 Arabidopsis thaliana HOM05D006496 ORTHO05D008390 4.6e-26 123.2 380 27.4
BraA10t43786Z Brassica rapa HOM05D006496 ORTHO05D008390 4.6e-26 123.2 418 26.6
FvH4_3g35002 Fragaria vesca HOM05D006496 ORTHO05D008390 4.6e-26 123.2 276 31.2
C09p52290 Brassica napus HOM05D006496 ORTHO05D008390 1.0e-25 122.1 418 26.1
BcaC04g19631 Brassica carinata HOM05D006496 ORTHO05D008390 1.3e-25 121.7 418 26.3
FAN16G2573 Fragaria x ananassa HOM05D006496 ORTHO05D008390 1.3e-25 121.7 295 30.2
TWI75G0988 Tripterygium wilfordii HOM05D006496 ORTHO05D008390 1.3e-25 121.7 271 32.5
FAN11G2800 Fragaria x ananassa HOM05D006496 ORTHO05D008390 1.7e-25 121.3 273 31.5
Manes.04G031000 Manihot esculenta HOM05D006496 ORTHO05D008390 2.3e-25 120.9 285 31.6
CiPaw.13G099300 Carya illinoinensis HOM05D006496 ORTHO05D008390 3.9e-25 120.2 324 31.5
Prupe.6G084200 Prunus persica HOM05D006496 ORTHO05D008390 5.1e-25 119.8 268 32.8
FvH4_3g35010 Fragaria vesca HOM05D006496 ORTHO05D008390 8.7e-25 119.0 275 31.3
DCAR_015607 Daucus carota HOM05D006496 ORTHO05D008390 1.1e-24 118.6 187 42.8
Atru.chr3.3823 Acer truncatum HOM05D006496 ORTHO05D008390 1.9e-24 117.9 314 30.9
A10p17060 Brassica napus HOM05D006496 ORTHO05D008390 1.9e-24 117.9 418 26.1
FAN11G0827 Fragaria x ananassa HOM05D006496 ORTHO05D008390 5.6e-24 116.3 291 30.6
Potri.009G027600 Populus trichocarpa HOM05D006496 ORTHO05D008390 4.7e-23 113.2 277 30.3
COL.COLO4_18451 Corchorus olitorius HOM05D006496 ORTHO05D008390 4.0e-22 110.2 179 39.1
Medtr2g096520 Medicago truncatula HOM05D006496 ORTHO05D008390 9.0e-22 109.0 306 31.7
Aa31sc23G160 Aethionema arabicum HOM05D006496 ORTHO05D008390 1.2e-21 108.6 275 29.5
EL10Ac7g15965 Beta vulgaris HOM05D006496 ORTHO05D008390 9.9e-21 105.5 315 27.3
CSS0005064 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 9.9e-21 105.5 148 41.2
THA.LOC104810806 Tarenaya hassleriana HOM05D006496 ORTHO05D008390 1.7e-20 104.8 271 27.7
MSTRG.21184 Avicennia marina HOM05D006496 ORTHO05D008390 8.4e-20 102.4 138 49.3
Psat5g284080 Pisum sativum HOM05D006496 ORTHO05D008390 1.1e-19 102.1 297 30.0
Duzib168G2252 Durio zibethinus HOM05D006496 ORTHO05D008390 1.9e-19 101.3 201 35.3
FAN16G0777 Fragaria x ananassa HOM05D006496 ORTHO05D008390 1.9e-19 101.3 274 29.6
Glyma.13G333300 Glycine max HOM05D006496 ORTHO05D008390 3.2e-19 100.5 308 28.9
FAN21G0875 Fragaria x ananassa HOM05D006496 ORTHO05D008390 4.2e-19 100.1 318 26.4
BolC3t13791H Brassica oleracea HOM05D006496 ORTHO05D008390 7.1e-19 99.4 275 27.3
BcaC01g06549 Brassica carinata HOM05D006496 ORTHO05D008390 9.3e-19 99.0 275 27.3
C03p13280 Brassica napus HOM05D006496 ORTHO05D008390 2.1e-18 97.8 275 27.3
Dinv06143 Davidia involucrata HOM05D021242 ORTHO05D022491 5.1e-17 93.2 136 38.2
TPR.G34315 Trifolium pratense HOM05D006496 ORTHO05D008390 5.1e-17 93.2 332 26.8
Sc06g0008220 Simmondsia chinensis HOM05D006496 ORTHO05D008390 1.1e-16 92.0 154 35.7
A03p11480 Brassica napus HOM05D006496 ORTHO05D008390 5.6e-16 89.7 181 35.4
Lj3g0009171 Lotus japonicus HOM05D006496 ORTHO05D008390 1.3e-15 88.6 169 33.1
Ca_01342_v3 Cicer arietinum L. HOM05D006496 ORTHO05D008390 6.2e-15 86.3 204 31.9
BraA03t10462Z Brassica rapa HOM05D006496 ORTHO05D008390 1.1e-14 85.5 167 34.7
TPR.G34303 Trifolium pratense HOM05D006496 ORTHO05D008390 1.1e-14 85.5 231 28.6
Sabra09G0018800 Salix brachista HOM05D006496 ORTHO05D008390 1.8e-14 84.7 312 26.9
Psat5g284120 Pisum sativum HOM05D006496 ORTHO05D008390 2.4e-14 84.3 203 32.5
Cpa.g.sc190.31 Carica papaya HOM05D006496 ORTHO05D008390 4.0e-14 83.6 229 32.3
Thecc.09G327500 Theobroma cacao HOM05D006496 ORTHO05D008390 5.3e-14 83.2 176 33.5
Duzib093G1405 Durio zibethinus HOM05D006496 ORTHO05D004692 1.5e-13 81.6 172 31.4
FAN25G1110 Fragaria x ananassa HOM05D006496 ORTHO05D008390 2.0e-13 81.3 319 25.1
Gohir.A13G227300 Gossypium hirsutum HOM05D004190 ORTHO05D004692 1.4e-11 75.1 170 30.6
Gorai.013G263700 Gossypium raimondii HOM05D004190 ORTHO05D004692 1.4e-11 75.1 170 30.6
BraA03t10485Z Brassica rapa HOM05D004190 ORTHO05D004692 2.4e-11 74.3 184 28.3
Glyma.07G118700 Glycine max HOM05D006496 ORTHO05D008390 3.2e-11 73.9 203 27.6
Lalb_Chr22g0349991 Lupinus albus HOM05D006496 ORTHO05D008390 3.2e-11 73.9 201 24.4
Sp6g21060 Schrenkiella parvula HOM05D004190 ORTHO05D004692 3.2e-11 73.9 182 31.3
VMungo0464G2068 Vigna mungo HOM05D006496 ORTHO05D008390 3.2e-11 73.9 221 27.6
Gohir.D13G232900 Gossypium hirsutum HOM05D004190 ORTHO05D004692 1.2e-10 72.0 170 30.0
THA.LOC104814877 Tarenaya hassleriana HOM05D004190 ORTHO05D004692 1.2e-10 72.0 195 29.7
Thecc.09G321100 Theobroma cacao HOM05D004190 ORTHO05D004692 1.6e-10 71.6 193 25.4
COL.COLO4_18512 Corchorus olitorius HOM05D004190 ORTHO05D004692 2.7e-10 70.9 167 28.7
MD03G1092700 Malus domestica HOM05D004190 ORTHO05D004692 2.7e-10 70.9 182 27.5
ATR0680G240 Amborella trichopoda HOM05D003520 ORTHO05D003332 3.5e-10 70.5 300 25.3
Phvul.004G007200 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 3.5e-10 70.5 299 25.4
BraA10t43742Z Brassica rapa HOM05D000173 ORTHO05D000316 4.6e-10 70.1 187 27.8
Carub.0008s2005 Capsella rubella HOM05D004190 ORTHO05D004692 1.0e-09 68.9 184 29.9
AT5G59380 Arabidopsis thaliana HOM05D004190 ORTHO05D004692 1.8e-09 68.2 184 29.3
Duzib170G0106 Durio zibethinus HOM05D004190 ORTHO05D004692 2.3e-09 67.8 169 27.8
Thhalv10014530m.g Eutrema salsugineum HOM05D004190 ORTHO05D004692 3.0e-09 67.4 179 29.1
arahy.Tifrunner.gnm1.ann1.4RYS79 Arachis hypogaea HOM05D006496 ORTHO05D008390 3.9e-09 67.0 87 41.4
Ciclev10018609m.g Citrus clementina HOM05D003520 ORTHO05D003332 3.9e-09 67.0 284 25.7
MD11G1107500 Malus domestica HOM05D004190 ORTHO05D004692 5.1e-09 66.6 177 27.1
arahy.Tifrunner.gnm1.ann1.7PT1R0 Arachis hypogaea HOM05D006496 ORTHO05D008390 1.5e-08 65.1 63 49.2
Manes.01G173632 Manihot esculenta HOM05D004190 ORTHO05D004692 1.5e-08 65.1 183 29.5
Prupe.6G076700 Prunus persica HOM05D004190 ORTHO05D004692 1.5e-08 65.1 184 27.7
Rhsim07G0092500 Rhododendron simsii HOM05D003520 ORTHO05D003332 1.9e-08 64.7 316 25.9
Sed0024869 Sechium edule HOM05D004190 ORTHO05D004692 1.9e-08 64.7 169 27.8
BcaB01g04590 Brassica carinata HOM05D004190 ORTHO05D004692 2.5e-08 64.3 186 28.0
Lj2g0020727 Lotus japonicus HOM05D003520 ORTHO05D003332 2.5e-08 64.3 180 26.7
BcaB05g22507 Brassica carinata HOM05D004190 ORTHO05D004692 3.3e-08 63.9 202 26.7
C02p12490 Brassica napus HOM05D000173 ORTHO05D000316 3.3e-08 63.9 228 25.0
BcaB01g04586 Brassica carinata HOM05D004190 ORTHO05D004692 4.3e-08 63.5 187 26.7
BcaC03g14013 Brassica carinata HOM05D004190 ORTHO05D004692 4.3e-08 63.5 206 25.2
BolC2t07349H Brassica oleracea HOM05D004190 ORTHO05D004692 4.3e-08 63.5 206 25.2
Duzib150G1353 Durio zibethinus HOM05D004190 ORTHO05D004692 4.3e-08 63.5 169 26.6
TAR623G1294 Trochodendron aralioides HOM05D004190 ORTHO05D004692 4.3e-08 63.5 192 27.1
Actinidia07264 Actinidia chinensis HOM05D004190 ORTHO05D004692 5.6e-08 63.2 164 26.8
Phvul.L002943 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 5.6e-08 63.2 50 56.0
AL8G35820 Arabidopsis lyrata HOM05D004190 ORTHO05D004692 7.4e-08 62.8 184 27.7
BcaC04g19780 Brassica carinata HOM05D004190 ORTHO05D004692 9.6e-08 62.4 188 27.1
C03p13790 Brassica napus HOM05D004190 ORTHO05D004692 9.6e-08 62.4 175 27.4
C09p51780 Brassica napus HOM05D000173 ORTHO05D004692 9.6e-08 62.4 188 27.1
BolC9t58040H Brassica oleracea HOM05D000173 ORTHO05D004692 9.6e-08 62.4 188 27.1
BcaC01g06528 Brassica carinata HOM05D004190 ORTHO05D004692 2.1e-07 61.2 168 27.4
THA.LOC104810778 Tarenaya hassleriana HOM05D004190 ORTHO05D004692 2.1e-07 61.2 173 28.3
VMungo1080G1046 Vigna mungo HOM05D006496 ORTHO05D008390 2.1e-07 61.2 195 25.1
GSVIVG01024954001 Vitis vinifera HOM05D004190 ORTHO05D004692 2.1e-07 61.2 173 28.3
BolC3t13827H Brassica oleracea HOM05D004190 ORTHO05D004692 2.8e-07 60.8 174 27.0
TWI79G1380 Tripterygium wilfordii HOM05D004190 ORTHO05D004692 3.7e-07 60.5 184 29.3
Gohir.A05G095600 Gossypium hirsutum HOM05D004190 ORTHO05D004692 6.2e-07 59.7 169 26.6
CARHR285750 Cardamine hirsuta HOM05D004190 ORTHO05D004692 8.1e-07 59.3 187 27.3
QL01p033212 Quercus lobata HOM05D006496 ORTHO05D008390 8.1e-07 59.3 148 31.8
Rhsim13G0195100 Rhododendron simsii HOM05D004190 ORTHO05D004692 8.1e-07 59.3 58 43.1
Medtr4g008590 Medicago truncatula HOM05D006496 ORTHO05D008390 1.1e-06 58.9 224 36.6
BraA02t05794Z Brassica rapa HOM05D004190 ORTHO05D004692 1.4e-06 58.5 185 25.9
Prupe.6G084500 Prunus persica HOM05D006496 ORTHO05D008390 1.4e-06 58.5 132 31.8
Thhalv10002683m.g Eutrema salsugineum HOM05D004190 ORTHO05D004692 1.8e-06 58.2 182 26.4
Lj3g0006193 Lotus japonicus HOM05D006496 ORTHO05D008390 2.4e-06 57.8 53 58.5
MSTRG.8747 Avicennia marina HOM05D003520 ORTHO05D003332 3.1e-06 57.4 163 26.4
Prupe.5G094800 Prunus persica HOM05D003520 ORTHO05D003332 3.1e-06 57.4 263 25.9
RcHm_v2.0_Chr5g0064931 Rosa chinensis HOM05D004190 ORTHO05D004692 3.1e-06 57.4 170 27.1
Atru.chr3.3912 Acer truncatum HOM05D004190 ORTHO05D004692 4.0e-06 57.0 172 27.9
Aa31LG4G15580 Aethionema arabicum HOM05D004190 ORTHO05D004692 4.0e-06 57.0 203 26.6
Aa31sc23G430 Aethionema arabicum HOM05D004190 ORTHO05D004692 4.0e-06 57.0 198 25.3
Oeu049557.4 Olea europaea HOM05D003520 ORTHO05D003332 4.0e-06 57.0 326 25.2
Sp5g15120 Schrenkiella parvula HOM05D004190 ORTHO05D004692 4.0e-06 57.0 171 27.5
Sed0018693 Sechium edule HOM05D004190 ORTHO05D004692 4.0e-06 57.0 170 25.3
BcaB08g36263 Brassica carinata HOM05D004190 ORTHO05D004692 5.3e-06 56.6 190 26.3
Gorai.009G099200 Gossypium raimondii HOM05D004190 ORTHO05D004692 6.9e-06 56.2 169 26.0
VMungo0464G1159 Vigna mungo HOM05D003520 ORTHO05D003332 6.9e-06 56.2 173 27.7
AL5G25450 Arabidopsis lyrata HOM05D004190 ORTHO05D004692 9.0e-06 55.8 179 29.6


User provided reference genes

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