Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0025632 Lotus japonicus HOM05D004364 ORTHO05D006299 4.7e-58 227.6 114 100.0
Phvul.011G156100 Phaseolus vulgaris HOM05D004364 ORTHO05D006299 5.4e-14 81.3 137 40.1
Glyma.12G146600 Glycine max HOM05D004364 ORTHO05D006299 7.1e-14 80.9 137 40.1
Lj3g0027191 Lotus japonicus HOM05D004364 ORTHO05D006299 1.2e-13 80.1 137 40.9
Glyma.06G255000 Glycine max HOM05D004364 ORTHO05D006299 1.6e-13 79.7 137 39.4
Nitab4.5_0000092g0270 Nicotiana tabacum HOM05D004364 ORTHO05D006299 2.1e-13 79.3 93 46.2
CANSAT11G0334 Cannabis sativa HOM05D004364 ORTHO05D006299 7.9e-13 77.4 129 38.8
arahy.Tifrunner.gnm1.ann1.19RIMK Arachis hypogaea HOM05D004364 ORTHO05D006299 1.0e-12 77.0 136 37.5
arahy.Tifrunner.gnm1.ann1.B7TU6S Arachis hypogaea HOM05D004364 ORTHO05D006299 1.0e-12 77.0 136 37.5
Atru.chr2.2938 Acer truncatum HOM05D004364 ORTHO05D006299 1.8e-12 76.3 129 38.8
Psat5g247520 Pisum sativum HOM05D004364 ORTHO05D006299 1.8e-12 76.3 128 36.7
Ca_01795_v3 Cicer arietinum L. HOM05D004364 ORTHO05D006299 2.3e-12 75.9 128 37.5
TPR.G32881 Trifolium pratense HOM05D004364 ORTHO05D006299 2.3e-12 75.9 129 37.2
Manes.03G117700 Manihot esculenta HOM05D004364 ORTHO05D006299 3.0e-12 75.5 129 38.8
Aqoxy1G03944 Aquilegia oxysepala HOM05D004364 ORTHO05D006299 5.1e-12 74.7 129 39.5
Cc05_g12790 Coffea canephora HOM05D004364 ORTHO05D006299 5.1e-12 74.7 129 38.0
PSO832G2674 Papaver somniferum HOM05D004364 ORTHO05D006299 6.7e-12 74.3 129 38.8
Medtr2g081180 Medicago truncatula HOM05D004364 ORTHO05D006299 8.7e-12 73.9 128 35.9
AL3G34510 Arabidopsis lyrata HOM05D004364 ORTHO05D006299 1.1e-11 73.6 129 38.0
AT3G20630 Arabidopsis thaliana HOM05D004364 ORTHO05D006299 1.1e-11 73.6 129 38.0
BcaB06g26128 Brassica carinata HOM05D004364 ORTHO05D006299 1.1e-11 73.6 129 38.0
A05p28190 Brassica napus HOM05D004364 ORTHO05D006299 1.1e-11 73.6 129 38.0
C05p43630 Brassica napus HOM05D004364 ORTHO05D006299 1.1e-11 73.6 129 38.0
BolC5t33082H Brassica oleracea HOM05D004364 ORTHO05D006299 1.1e-11 73.6 129 38.0
BraA05t21700Z Brassica rapa HOM05D004364 ORTHO05D006299 1.1e-11 73.6 129 38.0
CARHR096430 Cardamine hirsuta HOM05D004364 ORTHO05D006299 1.1e-11 73.6 129 38.0
CSS0001646 Camellia sinensis var. sinensis HOM05D004364 ORTHO05D006299 1.5e-11 73.2 129 38.0
MD03G1217200 Malus domestica HOM05D004364 ORTHO05D006299 1.5e-11 73.2 129 38.0
MD11G1234900 Malus domestica HOM05D004364 ORTHO05D006299 1.5e-11 73.2 129 38.0
PSO210G4872 Papaver somniferum HOM05D004364 ORTHO05D006299 1.5e-11 73.2 144 34.7
Prupe.4G192200 Prunus persica HOM05D004364 ORTHO05D006299 1.5e-11 73.2 129 38.0
BcaB04g19118 Brassica carinata HOM05D004364 ORTHO05D006299 1.9e-11 72.8 129 38.0
A03p41850 Brassica napus HOM05D004364 ORTHO05D006299 1.9e-11 72.8 129 38.0
BraA03t13338Z Brassica rapa HOM05D004364 ORTHO05D006299 1.9e-11 72.8 129 38.0
Dinv22351 Davidia involucrata HOM05D004364 ORTHO05D006299 1.9e-11 72.8 129 38.0
Thhalv10020069m.g Eutrema salsugineum HOM05D004364 ORTHO05D006299 1.9e-11 72.8 129 38.0
Lalb_Chr02g0159341 Lupinus albus HOM05D004364 ORTHO05D006299 1.9e-11 72.8 136 36.8
Cpa.g.sc12.20 Carica papaya HOM05D004364 ORTHO05D006299 2.5e-11 72.4 129 35.7
Hma1.2p1_0015F.1_g010280 Hydrangea macrophylla HOM05D004364 ORTHO05D006299 2.5e-11 72.4 128 38.3
BcaC05g28303 Brassica carinata HOM05D004364 ORTHO05D006299 4.3e-11 71.6 129 37.2
QL08p017220 Quercus lobata HOM05D004364 ORTHO05D006299 4.3e-11 71.6 126 38.1
BcaC01g03545 Brassica carinata HOM05D004364 ORTHO05D006299 5.6e-11 71.2 129 37.2
C03p51230 Brassica napus HOM05D004364 ORTHO05D006299 5.6e-11 71.2 129 37.2
BolC3t17413H Brassica oleracea HOM05D004364 ORTHO05D006299 5.6e-11 71.2 129 37.2
Gohir.D08G031200 Gossypium hirsutum HOM05D004364 ORTHO05D006299 5.6e-11 71.2 129 37.2
Gorai.004G028800 Gossypium raimondii HOM05D004364 ORTHO05D006299 5.6e-11 71.2 129 37.2
RcHm_v2.0_Chr5g0036241 Rosa chinensis HOM05D004364 ORTHO05D006299 5.6e-11 71.2 129 37.2
CiPaw.11G178500 Carya illinoinensis HOM05D004364 ORTHO05D006299 7.4e-11 70.9 129 38.0
Potri.011G125800 Populus trichocarpa HOM05D004364 ORTHO05D006299 7.4e-11 70.9 129 36.4
FAN16G3737 Fragaria x ananassa HOM05D004364 ORTHO05D006299 9.6e-11 70.5 129 37.2
Gohir.A08G020600 Gossypium hirsutum HOM05D004364 ORTHO05D006299 9.6e-11 70.5 129 37.2
Sp3g18670 Schrenkiella parvula HOM05D004364 ORTHO05D006299 9.6e-11 70.5 129 37.2
THA.LOC104816919 Tarenaya hassleriana HOM05D004364 ORTHO05D006299 9.6e-11 70.5 129 36.4
Cfa020489 Carpinus fangiana HOM05D004364 ORTHO05D006299 1.3e-10 70.1 129 36.4
Lalb_Chr06g0175311 Lupinus albus HOM05D004364 ORTHO05D006299 1.3e-10 70.1 136 36.0
Thecc.07G069000 Theobroma cacao HOM05D004364 ORTHO05D006299 1.6e-10 69.7 129 38.0
Haze_09550 Corylus avellana HOM05D004364 ORTHO05D006299 2.1e-10 69.3 129 37.2
MELO3C018182.2 Cucumis melo HOM05D004364 ORTHO05D006299 2.1e-10 69.3 129 37.2
DCAR_008692 Daucus carota HOM05D004364 ORTHO05D006299 2.1e-10 69.3 129 34.9
FvH4_3g21160 Fragaria vesca HOM05D004364 ORTHO05D006299 2.1e-10 69.3 129 37.2
FAN11G0387 Fragaria x ananassa HOM05D004364 ORTHO05D006299 2.1e-10 69.3 129 37.2
FAN21G1304 Fragaria x ananassa HOM05D004364 ORTHO05D006299 2.1e-10 69.3 129 37.2
Sabra11G0111700 Salix brachista HOM05D004364 ORTHO05D006299 2.1e-10 69.3 125 36.8
TWI39G0400 Tripterygium wilfordii HOM05D004364 ORTHO05D006299 2.1e-10 69.3 134 35.8
GSVIVG01014465001 Vitis vinifera HOM05D004364 ORTHO05D006299 2.1e-10 69.3 129 38.0
AUR62041167 Chenopodium quinoa HOM05D004364 ORTHO05D006299 2.8e-10 68.9 134 35.1
Duzib170G0088 Durio zibethinus HOM05D004364 ORTHO05D006299 2.8e-10 68.9 125 36.8
SHI10080 Sapria himalayana HOM05D004364 ORTHO05D006299 2.8e-10 68.9 136 35.3
ClCG11G018570 Citrullus lanatus HOM05D004364 ORTHO05D006299 3.6e-10 68.6 129 36.4
CsaV3_3G044300 Cucumis sativus L. HOM05D004364 ORTHO05D006299 3.6e-10 68.6 129 36.4
Peaxi162Scf01216g00070 Petunia axillaris HOM05D004364 ORTHO05D006299 3.6e-10 68.6 130 36.2
SGA_v2.0_scaffold9G04963 Striga asiatica HOM05D004364 ORTHO05D006299 3.6e-10 68.6 129 36.4
MSTRG.12935 Avicennia marina HOM05D004364 ORTHO05D006299 4.8e-10 68.2 129 36.4
FAN25G2975 Fragaria x ananassa HOM05D004364 ORTHO05D006299 4.8e-10 68.2 129 36.4
SalBow7G1127 Salvia bowleyana HOM05D004364 ORTHO05D006299 4.8e-10 68.2 129 34.9
SEGI_22005 Sequoiadendron giganteum HOM05D004364 ORTHO05D006299 6.2e-10 67.8 129 35.7
Sc16g0006700 Simmondsia chinensis HOM05D004364 ORTHO05D006299 6.2e-10 67.8 133 34.6
Nitab4.5_0000297g0190 Nicotiana tabacum HOM05D004364 ORTHO05D006299 8.1e-10 67.4 130 35.4
PGR083G1074 Punica granatum HOM05D004364 ORTHO05D006299 8.1e-10 67.4 129 37.2
Solyc07g063650.4 Solanum lycopersicum HOM05D004364 ORTHO05D006299 8.1e-10 67.4 129 35.7
AUR62029293 Chenopodium quinoa HOM05D004364 ORTHO05D006299 1.1e-09 67.0 134 34.3
Nitab4.5_0001386g0060 Nicotiana tabacum HOM05D004364 ORTHO05D006299 1.1e-09 67.0 129 34.1
Sed0018829 Sechium edule HOM05D004364 ORTHO05D006299 1.1e-09 67.0 129 36.4
Potri.001G408800 Populus trichocarpa HOM05D004364 ORTHO05D006299 1.4e-09 66.6 129 35.7
Sopen07g031830 Solanum pennellii HOM05D004364 ORTHO05D006299 1.4e-09 66.6 129 34.9
Ciclev10007478m.g Citrus clementina HOM05D004364 ORTHO05D006299 1.8e-09 66.2 130 35.4
Nn1g06827 Nelumbo nucifera HOM05D004364 ORTHO05D006299 1.8e-09 66.2 129 35.7
Pp3c19_17130 Physcomitrium patens HOM05D004364 ORTHO05D006299 1.8e-09 66.2 132 35.6
CDE01G0428 Ceratophyllum demersum HOM05D004364 ORTHO05D006299 2.4e-09 65.9 129 34.9
HanXRQChr13g0407291 Helianthus annuus HOM05D004364 ORTHO05D006299 2.4e-09 65.9 129 35.7
TAR626G1658 Trochodendron aralioides HOM05D004364 ORTHO05D006299 2.4e-09 65.9 129 34.1
Migut.H01895 Erythranthe guttata HOM05D004364 ORTHO05D006299 3.1e-09 65.5 128 33.6
Ah.04g165340 Amaranthus hybridus HOM05D004364 ORTHO05D006299 4.0e-09 65.1 137 32.8
CAN.G162.111 Capsicum annuum HOM05D004364 ORTHO05D006299 4.0e-09 65.1 129 34.9
Lsat_1_v5_gn_0_5341 Lactuca sativa HOM05D004364 ORTHO05D006299 4.0e-09 65.1 129 32.6
Oeu060533.1 Olea europaea HOM05D004364 ORTHO05D006299 4.0e-09 65.1 121 38.0
Hund02178 Selenicereus undatus HOM05D004364 ORTHO05D006299 5.3e-09 64.7 125 37.6
Eucgr.F01066 Eucalyptus grandis HOM05D004364 ORTHO05D006299 1.2e-08 63.5 129 35.7
HPP92_005995 Vanilla planifolia HOM05D004364 ORTHO05D006299 2.0e-08 62.8 125 35.2
HanXRQChr03g0076071 Helianthus annuus HOM05D004364 ORTHO05D006299 2.6e-08 62.4 132 33.3
TAR624G0100 Trochodendron aralioides HOM05D004364 ORTHO05D006299 2.6e-08 62.4 132 32.6
Mapoly0028s0083 Marchantia polymorpha HOM05D004364 ORTHO05D006299 9.9e-08 60.5 125 34.4
ATR1132G023 Amborella trichopoda HOM05D004364 ORTHO05D006299 2.2e-07 59.3 128 31.2
unitig_21.g20140 Utricularia gibba HOM05D004364 ORTHO05D006299 2.9e-07 58.9 129 32.6
Carub.0003s2061 Capsella rubella HOM05D004364 ORTHO05D006299 4.9e-07 58.2 36 72.2
Aa31LG8G7430 Aethionema arabicum HOM05D004364 ORTHO05D006299 6.4e-07 57.8 179 26.3
VMungo1127G0244 Vigna mungo HOM05D004364 ORTHO05D006299 6.4e-07 57.8 36 75.0
RhsimUnG0257500 Rhododendron simsii HOM05D004364 ORTHO05D006299 1.1e-06 57.0 44 65.9
Zm00001eb336890 Zea mays HOM05D004364 ORTHO05D006299 1.1e-06 57.0 131 32.1
COL.COLO4_09498 Corchorus olitorius HOM05D004364 ORTHO05D006299 1.4e-06 56.6 101 40.6
ECA240G1374 Erigeron canadensis HOM05D004364 ORTHO05D006299 1.9e-06 56.2 122 32.8
Lj8C162G4 Lonicera japonica HOM05D004364 ORTHO05D006299 1.9e-06 56.2 76 44.7
TAR624G1198 Trochodendron aralioides HOM05D004364 ORTHO05D006299 1.9e-06 56.2 132 31.1
vmacro09573 Vaccinium macrocarpon HOM05D004364 ORTHO05D006299 1.9e-06 56.2 74 47.3
Aqoxy5G02435 Aquilegia oxysepala HOM05D004364 ORTHO05D006299 3.2e-06 55.5 131 32.1


User provided reference genes

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