Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0017373 Lotus japonicus HOM05D005564 ORTHO05D006872 1.7e-162 575.9 283 100.0
Lalb_Chr19g0127411 Lupinus albus HOM05D005564 ORTHO05D006872 6.1e-131 471.1 282 80.5
Glyma.01G079300 Glycine max HOM05D005564 ORTHO05D006872 3.3e-129 465.3 282 81.9
VMungo1383G3643 Vigna mungo HOM05D005564 ORTHO05D006872 9.7e-129 463.8 282 80.9
Phvul.008G143300 Phaseolus vulgaris HOM05D005564 ORTHO05D006872 2.8e-128 462.2 281 80.1
Ca_27086_v3 Cicer arietinum L. HOM05D005564 ORTHO05D006872 1.0e-125 453.8 270 81.1
TPR.G39148 Trifolium pratense HOM05D005564 ORTHO05D006872 2.2e-125 452.6 301 74.4
arahy.Tifrunner.gnm1.ann1.2T0BFY Arachis hypogaea HOM05D005564 ORTHO05D006872 2.9e-125 452.2 281 78.6
Medtr0053s0020 Medicago truncatula HOM05D005564 ORTHO05D006872 3.2e-124 448.7 300 73.3
Phvul.005G030000 Phaseolus vulgaris HOM05D005564 ORTHO05D006872 2.3e-122 442.6 282 77.7
VMungo1080G0069 Vigna mungo HOM05D005564 ORTHO05D006872 5.2e-114 414.8 324 67.0
Thecc.03G145600 Theobroma cacao HOM05D005564 ORTHO05D006872 2.8e-104 382.5 289 67.5
Duzib084G1177 Durio zibethinus HOM05D005564 ORTHO05D006872 2.4e-103 379.4 288 68.8
Cfa013601 Carpinus fangiana HOM05D005564 ORTHO05D006872 5.0e-101 371.7 284 67.3
Manes.06G130000 Manihot esculenta HOM05D005564 ORTHO05D006872 4.2e-100 368.6 289 64.7
FvH4_7g26720 Fragaria vesca HOM05D005564 ORTHO05D006872 5.5e-100 368.2 282 64.2
Sabra15G0133100 Salix brachista HOM05D005564 ORTHO05D006872 2.1e-99 366.3 288 65.3
Gohir.D07G048900 Gossypium hirsutum HOM05D005564 ORTHO05D006872 3.6e-99 365.5 289 66.4
Gorai.001G052100 Gossypium raimondii HOM05D005564 ORTHO05D006872 4.7e-99 365.2 289 66.1
Cpa.g.sc13.231 Carica papaya HOM05D005564 ORTHO05D006872 8.0e-99 364.4 292 66.1
Hma1.2p1_1014F.1_g247960 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 2.3e-98 362.8 287 64.5
Hma1.2p1_1305F.1_g274526 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 2.3e-98 362.8 287 64.5
Gohir.A13G032000 Gossypium hirsutum HOM05D005564 ORTHO05D006872 1.2e-97 360.5 289 65.4
Potri.015G111628 Populus trichocarpa HOM05D005564 ORTHO05D006872 1.2e-97 360.5 288 63.5
CSS0008072 Camellia sinensis var. sinensis HOM05D005564 ORTHO05D006872 2.0e-97 359.8 287 64.1
Gorai.007G289400 Gossypium raimondii HOM05D005564 ORTHO05D006872 1.7e-96 356.7 288 64.9
Gorai.005G129900 Gossypium raimondii HOM05D005564 ORTHO05D006872 1.1e-95 354.0 289 64.7
PGR042G2925 Punica granatum HOM05D005564 ORTHO05D006872 2.4e-95 352.8 287 63.4
CANSAT56G0249 Cannabis sativa HOM05D005564 ORTHO05D006872 7.0e-95 351.3 286 64.7
QL09p027441 Quercus lobata HOM05D005564 ORTHO05D006872 1.6e-94 350.1 287 62.7
Migut.F00541 Erythranthe guttata HOM05D005564 ORTHO05D006872 7.7e-94 347.8 289 60.6
TWI39G1038 Tripterygium wilfordii HOM05D005564 ORTHO05D006872 7.7e-94 347.8 288 62.8
GSVIVG01024470001 Vitis vinifera HOM05D005564 ORTHO05D006872 1.0e-93 347.4 282 61.7
Ciclev10032148m.g Citrus clementina HOM05D005564 ORTHO05D006872 2.3e-93 346.3 316 57.9
Prupe.2G270700 Prunus persica HOM05D005564 ORTHO05D006872 2.9e-93 345.9 283 62.2
TAR629G2772 Trochodendron aralioides HOM05D005564 ORTHO05D006872 3.8e-93 345.5 292 62.0
CiPaw.07G183300 Carya illinoinensis HOM05D005564 ORTHO05D006872 8.6e-93 344.4 234 71.4
C09p39850 Brassica napus HOM05D005564 ORTHO05D006872 1.5e-92 343.6 291 60.5
CsaV3_5G005020 Cucumis sativus L. HOM05D005564 ORTHO05D006872 1.9e-92 343.2 289 58.8
SalBow3G4594 Salvia bowleyana HOM05D005564 ORTHO05D006872 1.9e-92 343.2 282 62.1
Dinv34536 Davidia involucrata HOM05D005564 ORTHO05D006872 2.5e-92 342.8 270 64.8
BcaC04g20726 Brassica carinata HOM05D005564 ORTHO05D006872 3.3e-92 342.4 291 60.1
BolC9t56884H Brassica oleracea HOM05D005564 ORTHO05D006872 3.3e-92 342.4 291 60.1
Haze_22223 Corylus avellana HOM05D005564 ORTHO05D006872 3.3e-92 342.4 272 65.1
MD07G1241800 Malus domestica HOM05D005564 ORTHO05D006872 3.3e-92 342.4 287 61.7
BraSC35t46004Z Brassica rapa HOM05D005564 ORTHO05D006872 4.2e-92 342.0 290 60.7
A10p07960 Brassica napus HOM05D005564 ORTHO05D006872 9.5e-92 340.9 290 60.3
Thhalv10014247m.g Eutrema salsugineum HOM05D005564 ORTHO05D006872 2.1e-91 339.7 294 60.5
SGA_v2.0_scaffold60G20845 Striga asiatica HOM05D005564 ORTHO05D006872 3.6e-91 339.0 286 60.1
Nitab4.5_0003973g0040 Nicotiana tabacum HOM05D005564 ORTHO05D006872 4.7e-91 338.6 289 60.6
AT5G51170 Arabidopsis thaliana HOM05D005564 ORTHO05D006872 8.0e-91 337.8 285 61.4
CARHR256880 Cardamine hirsuta HOM05D005564 ORTHO05D006872 6.8e-90 334.7 293 60.8
Eucgr.A02932 Eucalyptus grandis HOM05D005564 ORTHO05D006872 8.9e-90 334.3 285 61.8
Aa31LG3G7670 Aethionema arabicum HOM05D005564 ORTHO05D006872 1.2e-89 334.0 294 59.2
HanXRQChr08g0221891 Helianthus annuus HOM05D005564 ORTHO05D006872 1.2e-89 334.0 279 62.4
MSTRG.27230 Avicennia marina HOM05D005564 ORTHO05D006872 1.5e-89 333.6 284 59.5
COL.COLO4_37310 Corchorus olitorius HOM05D005564 ORTHO05D006872 2.6e-89 332.8 257 66.9
FAN03G1301 Fragaria x ananassa HOM05D005564 ORTHO05D006872 4.4e-89 332.0 267 62.2
HanXRQChr08g0223121 Helianthus annuus HOM05D005564 ORTHO05D006872 4.4e-89 332.0 279 62.4
THA.LOC104825050 Tarenaya hassleriana HOM05D005564 ORTHO05D006872 4.4e-89 332.0 288 59.7
FAN06G0976 Fragaria x ananassa HOM05D005564 ORTHO05D006872 7.5e-89 331.3 267 62.9
Sp6g13380 Schrenkiella parvula HOM05D005564 ORTHO05D006872 7.5e-89 331.3 290 59.7
Carub.0008s1121 Capsella rubella HOM05D005564 ORTHO05D006872 1.7e-88 330.1 293 59.0
ClCG01G004820 Citrullus lanatus HOM05D005564 ORTHO05D006872 2.2e-88 329.7 299 56.9
Oeu030874.1 Olea europaea HOM05D005564 ORTHO05D006872 2.2e-88 329.7 285 57.5
Atru.chr6.1979 Acer truncatum HOM05D005564 ORTHO05D006872 2.8e-88 329.3 294 59.5
Atru.chr6.2007 Acer truncatum HOM05D005564 ORTHO05D006872 2.8e-88 329.3 294 59.5
Nn6g33765 Nelumbo nucifera HOM05D005564 ORTHO05D006872 4.9e-88 328.6 283 61.8
vmacro19959 Vaccinium macrocarpon HOM05D005564 ORTHO05D006872 4.9e-88 328.6 285 60.7
AL8G25430 Arabidopsis lyrata HOM05D005564 ORTHO05D006872 6.3e-88 328.2 292 59.2
EL10Ac7g17720 Beta vulgaris HOM05D005564 ORTHO05D006872 8.3e-88 327.8 337 52.2
MD07G1243700 Malus domestica HOM05D005564 ORTHO05D006872 8.3e-88 327.8 288 59.0
BcaB08g35471 Brassica carinata HOM05D005564 ORTHO05D006872 3.1e-87 325.9 292 58.6
TAR636G1392 Trochodendron aralioides HOM05D005564 ORTHO05D008130 1.6e-86 323.6 272 61.8
Lj8A49G34 Lonicera japonica HOM05D005564 ORTHO05D006872 4.5e-86 322.0 298 60.1
DCAR_020165 Daucus carota HOM05D005564 ORTHO05D006872 1.0e-85 320.9 283 62.2
CSS0031726 Camellia sinensis var. sinensis HOM05D005564 ORTHO05D006872 1.3e-85 320.5 288 57.3
Gorai.013G121700 Gossypium raimondii HOM05D005564 ORTHO05D006872 2.3e-85 319.7 261 64.4
Sed0010204 Sechium edule HOM05D005564 ORTHO05D006872 1.5e-84 317.0 231 65.4
ClCG09G010750 Citrullus lanatus HOM05D005564 ORTHO05D006872 3.3e-84 315.8 282 56.0
PSO063G5398 Papaver somniferum HOM05D005564 ORTHO05D006872 4.3e-84 315.5 291 55.7
Peaxi162Scf00073g01727 Petunia axillaris HOM05D005564 ORTHO05D006872 4.3e-84 315.5 285 57.2
CAN.G309.23 Capsicum annuum HOM05D005564 ORTHO05D006872 9.5e-84 314.3 285 58.6
Ah.08g213710 Amaranthus hybridus HOM05D005564 ORTHO05D006872 1.2e-83 313.9 291 57.4
CDE02G1506 Ceratophyllum demersum HOM05D005564 ORTHO05D006872 1.6e-83 313.5 278 56.1
PGSC0003DMG400008328 Solanum tuberosum HOM05D005564 ORTHO05D006872 2.1e-83 313.2 284 58.5
Sopen03g024760 Solanum pennellii HOM05D005564 ORTHO05D006872 1.4e-82 310.5 286 57.3
Solyc03g093880.3 Solanum lycopersicum HOM05D005564 ORTHO05D006872 1.2e-81 307.4 286 56.3
ECA233G5472 Erigeron canadensis HOM05D005564 ORTHO05D006872 4.4e-81 305.4 253 62.1
Gohir.A07G044400 Gossypium hirsutum HOM05D005564 ORTHO05D006872 9.8e-81 304.3 255 61.6
Cc00_g13030 Coffea canephora HOM05D005564 ORTHO05D006872 1.3e-80 303.9 293 53.9
MD01G1175500 Malus domestica HOM05D005564 ORTHO05D006872 1.4e-79 300.4 312 52.9
PSO017G2767 Papaver somniferum HOM05D005564 ORTHO05D006872 1.0e-77 294.3 226 60.6
PSO782G4004 Papaver somniferum HOM05D005564 ORTHO05D006872 1.3e-77 293.9 291 54.3
SHI14145 Sapria himalayana HOM05D005564 ORTHO05D000001 1.3e-77 293.9 276 57.2
Hund18321 Selenicereus undatus HOM05D005564 ORTHO05D006872 1.7e-77 293.5 276 56.2
Medtr0092s0090 Medicago truncatula HOM05D005564 ORTHO05D006872 2.3e-77 293.1 214 69.2
MD07G1244900 Malus domestica HOM05D005564 ORTHO05D006872 5.0e-77 292.0 204 67.6
arahy.Tifrunner.gnm1.ann1.R6MN5Z Arachis hypogaea HOM05D005564 ORTHO05D006872 9.5e-76 287.7 276 57.2
Zm00001eb249040 Zea mays HOM05D005564 ORTHO05D006872 3.1e-74 282.7 287 50.5
RcHm_v2.0_Chr1g0373311 Rosa chinensis HOM05D005564 ORTHO05D006872 7.5e-73 278.1 220 65.5
AUR62008825 Chenopodium quinoa HOM05D005564 ORTHO05D006872 2.9e-72 276.2 205 64.4
AUR62025416 Chenopodium quinoa HOM05D005564 ORTHO05D006872 3.2e-71 272.7 214 61.2
FAN10G0633 Fragaria x ananassa HOM05D005564 ORTHO05D006872 5.4e-71 271.9 218 62.4
ATR0188G007 Amborella trichopoda HOM05D005564 ORTHO05D006872 2.3e-69 266.5 282 50.4
MELO3C005454.2 Cucumis melo HOM05D005564 ORTHO05D006872 1.5e-68 263.8 225 59.6
FAN01G2799 Fragaria x ananassa HOM05D005564 ORTHO05D006872 1.6e-67 260.4 287 49.5
unitig_21.g20780 Utricularia gibba HOM05D005564 ORTHO05D006872 2.1e-67 260.0 244 54.1
Rhsim03G0157100 Rhododendron simsii HOM05D005564 ORTHO05D006872 4.0e-66 255.8 263 52.9
SEGI_35477 Sequoiadendron giganteum HOM05D005564 ORTHO05D006872 5.1e-61 238.8 275 48.0
Os02g0651000 Oryza sativa ssp. japonica HOM05D005564 ORTHO05D006872 9.9e-57 224.6 189 57.1
Gorai.006G046400 Gossypium raimondii HOM05D005564 ORTHO05D006872 5.4e-55 218.8 224 56.2
Hma1.2p1_1014F.1_g247920 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 2.5e-52 209.9 177 61.0
Nn6g32633 Nelumbo nucifera HOM05D005564 ORTHO05D006872 3.3e-52 209.5 201 56.7
Nitab4.5_0000103g0380 Nicotiana tabacum HOM05D005564 ORTHO05D006872 1.6e-51 207.2 175 62.3
Sc19g0002740 Simmondsia chinensis HOM05D005564 ORTHO05D006872 2.1e-51 206.8 203 56.7
SMO145G0164 Selaginella moellendorffii HOM05D005564 ORTHO05D006872 4.7e-51 205.7 299 39.8
AagrBONN_evm.TU.Sc2ySwM_228.2399 Anthoceros agrestis HOM05D005564 ORTHO05D006872 9.0e-50 201.4 283 41.3
CANSAT78G0945 Cannabis sativa HOM05D005564 ORTHO05D006872 2.9e-48 196.4 238 47.1
MD07G1245400 Malus domestica HOM05D005564 ORTHO05D006872 5.4e-47 192.2 149 65.1
Aqoxy3G02663 Aquilegia oxysepala HOM05D005564 ORTHO05D006872 2.1e-46 190.3 130 67.7
Dinv34539 Davidia involucrata HOM05D005564 ORTHO05D006872 1.3e-45 187.6 264 43.9
MD07G1243300 Malus domestica HOM05D005564 ORTHO05D006872 1.7e-45 187.2 233 49.8
Psat3g166160 Pisum sativum HOM05D005564 ORTHO05D006872 1.5e-44 184.1 237 46.8
CAN.G1016.1 Capsicum annuum HOM05D005564 ORTHO05D006872 8.4e-40 168.3 119 64.7
Gohir.D02G135666 Gossypium hirsutum HOM05D005564 ORTHO05D006872 1.1e-39 167.9 105 77.1
Pp3c13_1340 Physcomitrium patens HOM05D005564 ORTHO05D006872 1.1e-39 167.9 242 43.0
Rhsim03G0158000 Rhododendron simsii HOM05D005564 ORTHO05D006872 9.3e-39 164.9 286 37.8
CDE11G0070 Ceratophyllum demersum HOM05D005564 ORTHO05D006872 4.6e-38 162.5 197 48.7
Psat3g164240 Pisum sativum HOM05D005564 ORTHO05D006872 7.9e-38 161.8 199 48.2
Lsat_1_v5_gn_8_13861 Lactuca sativa HOM05D000071 ORTHO05D006872 6.7e-37 158.7 115 61.7
Prupe.4G133000 Prunus persica HOM05D005564 ORTHO05D006872 3.7e-35 152.9 170 50.0
Gohir.D02G130966 Gossypium hirsutum HOM05D005564 ORTHO05D006872 4.6e-30 136.0 136 55.9
Nn6g32636 Nelumbo nucifera HOM05D005564 ORTHO05D006872 8.2e-27 125.2 84 72.6
CBR_g31024 Chara braunii HOM05D005564 ORTHO05D006872 3.1e-26 123.2 227 33.5
Mapoly0036s0004 Marchantia polymorpha HOM05D005564 ORTHO05D006872 4.8e-19 99.4 176 40.9
MCO11G677 Micromonas commoda HOM05D005564 ORTHO05D006872 8.2e-19 98.6 258 29.1
Cre01.g041900 Chlamydomonas reinhardtii HOM05D005564 ORTHO05D006872 4.6e-14 82.8 198 27.3


User provided reference genes

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