Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0014898 Lotus japonicus HOM05D001486 ORTHO05D004921 0.0e+00 2058.1 1067 100.0
Lj4g0010019 Lotus japonicus HOM05D001486 ORTHO05D004921 0.0e+00 1792.7 1080 87.1
Ca_17277_v3 Cicer arietinum L. HOM05D001486 ORTHO05D004921 0.0e+00 1723.8 1082 83.7
Glyma.08G045900 Glycine max HOM05D001486 ORTHO05D004921 0.0e+00 1723.8 1082 83.3
Glyma.05G238800 Glycine max HOM05D001486 ORTHO05D004921 0.0e+00 1713.0 1081 82.8
VMungo0251G0466 Vigna mungo HOM05D001486 ORTHO05D004921 0.0e+00 1709.5 1082 82.0
TPR.G19252 Trifolium pratense HOM05D001486 ORTHO05D004921 0.0e+00 1707.2 1081 82.7
Phvul.002G321200 Phaseolus vulgaris HOM05D001486 ORTHO05D004921 0.0e+00 1703.7 1082 82.0
arahy.Tifrunner.gnm1.ann1.FK3VI9 Arachis hypogaea HOM05D001486 ORTHO05D004921 0.0e+00 1692.2 1081 81.4
arahy.Tifrunner.gnm1.ann1.WZE3XK Arachis hypogaea HOM05D001486 ORTHO05D004921 0.0e+00 1688.7 1081 81.3
Medtr8g105290 Medicago truncatula HOM05D001486 ORTHO05D004921 0.0e+00 1685.2 1081 81.9
Psat7g007960 Pisum sativum HOM05D001486 ORTHO05D004921 0.0e+00 1678.7 1083 81.9
Lalb_Chr05g0222211 Lupinus albus HOM05D001486 ORTHO05D004921 0.0e+00 1654.0 1081 80.4
Lalb_Chr09g0330891 Lupinus albus HOM05D001486 ORTHO05D004921 0.0e+00 1644.4 1081 79.8
QL03p035815 Quercus lobata HOM05D001486 ORTHO05D004921 0.0e+00 1562.7 1086 75.4
CiPaw.06G051900 Carya illinoinensis HOM05D001486 ORTHO05D004921 0.0e+00 1546.2 1088 74.6
Dinv10475 Davidia involucrata HOM05D001486 ORTHO05D004921 0.0e+00 1542.7 1087 74.4
Thecc.02G292500 Theobroma cacao HOM05D001486 ORTHO05D004921 0.0e+00 1531.5 1087 74.2
Prupe.1G333300 Prunus persica HOM05D001486 ORTHO05D004921 0.0e+00 1519.2 1087 73.3
COL.COLO4_16588 Corchorus olitorius HOM05D001486 ORTHO05D004921 0.0e+00 1517.7 1086 73.5
Gohir.D02G139700 Gossypium hirsutum HOM05D001486 ORTHO05D004921 0.0e+00 1513.0 1087 73.0
Gorai.005G157100 Gossypium raimondii HOM05D001486 ORTHO05D004921 0.0e+00 1511.5 1087 72.9
Gohir.A03G115400 Gossypium hirsutum HOM05D001486 ORTHO05D004921 0.0e+00 1504.6 1087 72.7
Atru.chr11.925 Acer truncatum HOM05D001486 ORTHO05D004921 0.0e+00 1503.4 1087 73.0
Ciclev10014036m.g Citrus clementina HOM05D001486 ORTHO05D004921 0.0e+00 1502.3 1087 72.4
Duzib268G0355 Durio zibethinus HOM05D001486 ORTHO05D004921 0.0e+00 1501.1 1087 72.6
Actinidia36627 Actinidia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 1500.3 1087 72.1
CSS0037038 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D004921 0.0e+00 1494.6 1087 72.9
TWI74G0959 Tripterygium wilfordii HOM05D001486 ORTHO05D004921 0.0e+00 1491.5 1087 71.2
Duzib251G0538 Durio zibethinus HOM05D001486 ORTHO05D004921 0.0e+00 1482.6 1087 72.2
CANSAT01G0610 Cannabis sativa HOM05D001486 ORTHO05D004921 0.0e+00 1481.8 1084 71.7
FvH4_4g33560 Fragaria vesca HOM05D001486 ORTHO05D004921 0.0e+00 1476.5 1087 71.8
FAN22G2372 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 1475.7 1087 71.8
vmacro10693 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 0.0e+00 1474.9 1088 70.9
FAN12G0503 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 1473.8 1087 71.8
Actinidia12394 Actinidia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 1471.1 1079 71.5
Lj3A864G85 Lonicera japonica HOM05D001486 ORTHO05D004921 0.0e+00 1471.1 1090 71.1
Manes.17G083900 Manihot esculenta HOM05D001486 ORTHO05D004921 0.0e+00 1469.5 1088 70.7
FAN07G1595 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 1466.8 1087 71.6
RcHm_v2.0_Chr4g0443061 Rosa chinensis HOM05D001486 ORTHO05D004921 0.0e+00 1464.9 1086 71.5
Nn4g24372 Nelumbo nucifera HOM05D001486 ORTHO05D004921 0.0e+00 1461.4 1088 71.3
FAN17G1739 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 1455.7 1087 70.8
Potri.008G134800 Populus trichocarpa HOM05D001486 ORTHO05D004921 0.0e+00 1451.4 1087 69.5
PGR142G2431 Punica granatum HOM05D001486 ORTHO05D004921 0.0e+00 1441.4 1086 70.5
MD13G1020400 Malus domestica HOM05D001486 ORTHO05D004921 0.0e+00 1439.9 1084 70.8
Eucgr.G02106 Eucalyptus grandis HOM05D001486 ORTHO05D004921 0.0e+00 1425.2 1087 69.5
Sabra08G0102800 Salix brachista HOM05D001486 ORTHO05D004921 0.0e+00 1424.8 1107 67.8
Sed0010499 Sechium edule HOM05D001486 ORTHO05D004921 0.0e+00 1419.8 1086 69.0
MSTRG.2128 Avicennia marina HOM05D001486 ORTHO05D004921 0.0e+00 1416.4 1085 67.5
Migut.E00481 Erythranthe guttata HOM05D001486 ORTHO05D004921 0.0e+00 1414.1 1087 68.0
Rhsim09G0089500 Rhododendron simsii HOM05D001486 ORTHO05D004921 0.0e+00 1412.5 1088 68.8
CAN.G601.2 Capsicum annuum HOM05D001486 ORTHO05D004921 0.0e+00 1409.4 1087 67.6
ClCG07G005610 Citrullus lanatus HOM05D001486 ORTHO05D004921 0.0e+00 1407.9 1085 68.6
Aqoxy3G03310 Aquilegia oxysepala HOM05D001486 ORTHO05D004921 0.0e+00 1403.7 1082 68.9
Cc04_g10510 Coffea canephora HOM05D001486 ORTHO05D004921 0.0e+00 1403.7 1086 68.8
MELO3C026441.2 Cucumis melo HOM05D001486 ORTHO05D004921 0.0e+00 1403.3 1085 68.0
CAN.G149.16 Capsicum annuum HOM05D001486 ORTHO05D004921 0.0e+00 1398.3 1088 67.2
SalBow2G2685 Salvia bowleyana HOM05D001486 ORTHO05D004921 0.0e+00 1394.0 1105 66.3
CsaV3_5G015740 Cucumis sativus L. HOM05D001486 ORTHO05D004921 0.0e+00 1391.7 1086 67.7
SGA_v2.0_scaffold23G10214 Striga asiatica HOM05D001486 ORTHO05D004921 0.0e+00 1388.6 1087 66.7
Hma1.2p1_0277F.1_g111740 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 0.0e+00 1387.5 1138 67.0
Aqoxy7G03241 Aquilegia oxysepala HOM05D001486 ORTHO05D004921 0.0e+00 1387.1 1082 68.5
Solyc07g008160.3 Solanum lycopersicum HOM05D001486 ORTHO05D004921 0.0e+00 1379.8 1087 67.0
EL10Ac3g06288 Beta vulgaris HOM05D001486 ORTHO05D004921 0.0e+00 1378.2 1084 66.8
DCAR_007329 Daucus carota HOM05D001486 ORTHO05D004921 0.0e+00 1377.8 1073 67.3
Sopen07g004030 Solanum pennellii HOM05D001486 ORTHO05D004921 0.0e+00 1376.7 1087 66.8
Hund13366 Selenicereus undatus HOM05D001486 ORTHO05D004921 0.0e+00 1372.8 1083 66.7
THA.LOC104823681 Tarenaya hassleriana HOM05D001486 ORTHO05D004921 0.0e+00 1365.9 1071 67.1
Ah.13g072990 Amaranthus hybridus HOM05D001486 ORTHO05D004921 0.0e+00 1357.0 1082 65.9
Cpa.g.sc2.194 Carica papaya HOM05D001486 ORTHO05D004921 0.0e+00 1352.0 1086 67.3
CARHR015390 Cardamine hirsuta HOM05D001486 ORTHO05D004921 0.0e+00 1345.9 1083 66.4
Thhalv10006562m.g Eutrema salsugineum HOM05D001486 ORTHO05D004921 0.0e+00 1331.2 1083 66.3
HanXRQChr08g0212501 Helianthus annuus HOM05D001486 ORTHO05D004921 0.0e+00 1329.3 1087 64.4
Oeu064208.1 Olea europaea HOM05D001486 ORTHO05D004921 0.0e+00 1328.2 1087 65.3
Carub.0001s1464 Capsella rubella HOM05D001486 ORTHO05D004921 0.0e+00 1327.4 1083 65.3
Sp1g13290 Schrenkiella parvula HOM05D001486 ORTHO05D004921 0.0e+00 1327.4 1083 65.8
BcaB02g06554 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 1325.1 1083 65.8
AT1G14850 Arabidopsis thaliana HOM05D001486 ORTHO05D004921 0.0e+00 1323.9 1083 65.7
AL1G26870 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 0.0e+00 1323.1 1084 66.0
BcaC05g25406 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 1317.8 1083 65.5
C05p12830 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 1317.0 1093 65.4
ECA233G0786 Erigeron canadensis HOM05D001486 ORTHO05D004921 0.0e+00 1314.3 1087 64.0
BcaB08g34420 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 1312.7 1084 64.9
AUR62002589 Chenopodium quinoa HOM05D001486 ORTHO05D004921 0.0e+00 1312.4 1053 65.6
PSO782G0822 Papaver somniferum HOM05D001486 ORTHO05D004921 0.0e+00 1312.4 1083 65.0
Sc11g0004180 Simmondsia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 1311.2 1083 64.2
AUR62030013 Chenopodium quinoa HOM05D001486 ORTHO05D004921 0.0e+00 1310.4 1053 65.9
BolC5t30028H Brassica oleracea HOM05D001486 ORTHO05D004921 0.0e+00 1309.7 1093 64.9
A06p10890 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 1308.1 1093 65.0
BcaC07g41534 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 1307.4 1084 65.2
BraA06t24267Z Brassica rapa HOM05D001486 ORTHO05D004921 0.0e+00 1305.8 1093 64.9
C08p45360 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 1304.3 1094 64.9
A09p61750 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 1301.6 1091 65.1
BolC8t52091H Brassica oleracea HOM05D001486 ORTHO05D004921 0.0e+00 1301.6 1092 64.8
BraA09t41545Z Brassica rapa HOM05D001486 ORTHO05D004921 0.0e+00 1301.6 1095 64.9
PSO063G3102 Papaver somniferum HOM05D001486 ORTHO05D004921 0.0e+00 1300.4 1083 64.5
Lsat_1_v5_gn_8_46521 Lactuca sativa HOM05D001486 ORTHO05D004921 0.0e+00 1295.4 1071 64.2
Aa31LG1G260 Aethionema arabicum HOM05D001486 ORTHO05D004921 0.0e+00 1269.2 1053 65.1
ATR0753G157 Amborella trichopoda HOM05D001486 ORTHO05D004921 0.0e+00 1226.8 1090 62.6
Dinv07730 Davidia involucrata HOM05D001486 ORTHO05D004921 0.0e+00 1219.5 875 73.5
HPP92_002282 Vanilla planifolia HOM05D001486 ORTHO05D004921 0.0e+00 1198.3 1079 60.0
Haze_10881 Corylus avellana HOM05D001486 ORTHO05D004921 0.0e+00 1194.9 1118 61.2
Os06g0305200 Oryza sativa ssp. japonica HOM05D001486 ORTHO05D004921 0.0e+00 1192.2 1088 59.3
Zm00001eb009110 Zea mays HOM05D001486 ORTHO05D004921 0.0e+00 1145.6 1089 57.5
HanXRQChr12g0363231 Helianthus annuus HOM05D001486 ORTHO05D004921 0.0e+00 1109.0 1086 57.2
Peaxi162Scf00376g00816 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 1104.4 1087 56.5
Hma1.2p1_0705F.1_g206910 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 0.0e+00 1093.2 816 71.7
Nitab4.5_0010421g0010 Nicotiana tabacum HOM05D001486 ORTHO05D004921 8.0e-301 1037.3 1033 57.0
Nitab4.5_0004576g0040 Nicotiana tabacum HOM05D001486 ORTHO05D004921 6.8e-300 1034.2 1032 56.8
Mapoly0035s0137 Marchantia polymorpha HOM05D001486 ORTHO05D004921 2.0e-296 1022.7 1113 52.8
GSVIVG01011662001 Vitis vinifera HOM05D001486 ORTHO05D004921 1.2e-291 1006.9 731 72.6
Pp3c8_3720 Physcomitrium patens HOM05D001486 ORTHO05D004921 2.2e-290 1002.7 1103 51.3
Peaxi162Scf01391g00116 Petunia axillaris HOM05D001486 ORTHO05D004921 4.4e-267 925.2 1001 53.6
TAR629G0611 Trochodendron aralioides HOM05D001486 ORTHO05D004921 4.6e-248 862.1 585 76.1
Zm00001eb399840 Zea mays HOM05D001486 ORTHO05D004921 2.4e-241 839.7 815 57.1
AagrBONN_evm.TU.Sc2ySwM_362.1455 Anthoceros agrestis HOM05D001486 ORTHO05D004921 9.7e-222 774.6 882 51.6
unitig_27.g25159 Utricularia gibba HOM05D001486 ORTHO05D004921 6.9e-220 768.5 701 58.3
Peaxi162Scf01152g00010 Petunia axillaris HOM05D001486 ORTHO05D004921 4.5e-211 739.2 874 51.3
Peaxi162Scf01152g00113 Petunia axillaris HOM05D001486 ORTHO05D004921 8.8e-191 671.8 775 51.4
CDE06G1153 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 1.1e-177 628.2 587 58.1
SEGI_07920 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 4.9e-165 586.3 555 58.0
Peaxi162Scf00047g00710 Petunia axillaris HOM05D001486 ORTHO05D004921 2.1e-155 554.3 537 57.7
MD16G1018600 Malus domestica HOM05D001486 ORTHO05D004921 6.2e-152 542.7 478 63.8
TAR629G0795 Trochodendron aralioides HOM05D001486 ORTHO05D004921 1.2e-150 538.5 431 68.7
RcHm_v2.0_Chr2g0167011 Rosa chinensis HOM05D001486 ORTHO05D004921 1.1e-129 468.8 562 50.7
MD16G1018500 Malus domestica HOM05D001486 ORTHO05D004921 2.5e-121 441.0 349 67.9
Carub.0127s0003 Capsella rubella HOM05D001486 ORTHO05D004921 2.0e-110 404.8 487 49.5
CDE07G1854 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 1.1e-103 382.5 771 35.0
ECA247G0951 Erigeron canadensis HOM05D001486 ORTHO05D004921 1.7e-88 332.0 343 54.2
SEGI_12334 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 8.2e-80 303.1 349 50.1
MD16G1018800 Malus domestica HOM05D001486 ORTHO05D004921 1.5e-73 282.3 208 68.8
unitig_27.g25160 Utricularia gibba HOM05D001486 ORTHO05D004921 3.8e-69 267.7 216 64.8
vmacro04889 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 3.6e-67 261.2 239 58.6
SEGI_06977 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 7.0e-63 246.9 219 58.4
AL1G32070 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 4.5e-62 244.2 185 68.1
AL1G32080 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 6.6e-61 240.4 224 56.2
vmacro09906 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 1.9e-60 238.8 264 52.7
Zm00001eb255180 Zea mays HOM05D001486 ORTHO05D004921 2.4e-55 221.9 195 60.0
CDE06G1861 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 5.0e-53 214.2 172 63.4
Pp3c3_36410 Physcomitrium patens HOM05D001486 ORTHO05D004921 6.8e-42 177.2 190 52.6
RcHm_v2.0_Chr2g0167021 Rosa chinensis HOM05D001486 ORTHO05D004921 9.5e-36 156.8 208 48.1
AL2G18360 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 5.2e-34 151.0 337 34.1
MCO15G435 Micromonas commoda HOM05D001486 ORTHO05D004921 1.5e-33 149.4 1238 22.4
CSS0012816 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D004921 2.0e-33 149.1 175 50.3
Zm00001eb235300 Zea mays HOM05D001486 ORTHO05D004921 2.6e-33 148.7 130 57.7
Zm00001eb201400 Zea mays HOM05D001486 ORTHO05D004921 2.6e-25 122.1 110 60.0
Rhsim12G0118300 Rhododendron simsii HOM05D001486 ORTHO05D004921 7.8e-22 110.5 102 60.8
PRCOL_00002396 Prasinoderma coloniale HOM05D001486 ORTHO05D004921 3.6e-19 101.7 991 22.6
Cre09.g394350 Chlamydomonas reinhardtii HOM05D001486 ORTHO05D004921 4.0e-18 98.2 536 23.7
GSVIVG01026805001 Vitis vinifera HOM05D001486 ORTHO05D004921 5.4e-15 87.8 73 61.6
GSVIVG01001572001 Vitis vinifera HOM05D001486 ORTHO05D004921 1.3e-13 83.2 112 46.4
SMO306G0002 Selaginella moellendorffii HOM05D065592 ORTHO05D004921 3.2e-07 62.0 127 30.7
SMO270G0006 Selaginella moellendorffii HOM05D065592 ORTHO05D004921 9.3e-07 60.5 127 30.7


User provided reference genes

Program Settings