Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0002439 Lotus japonicus HOM05D005584 ORTHO05D006809 1.1e-124 449.9 223 100.0
Lj3g0022996 Lotus japonicus HOM05D005584 ORTHO05D006809 1.1e-122 443.4 223 98.7
Medtr5g077780 Medicago truncatula HOM05D005584 ORTHO05D006809 2.3e-101 372.5 223 83.0
Ca_28318_v3 Cicer arietinum L. HOM05D005584 ORTHO05D006809 1.1e-98 363.6 223 82.1
Psat2g045680 Pisum sativum HOM05D005584 ORTHO05D006809 2.5e-95 352.4 223 80.3
Lalb_Chr12g0210051 Lupinus albus HOM05D005584 ORTHO05D006809 2.1e-94 349.4 230 76.5
arahy.Tifrunner.gnm1.ann1.0L0HR0 Arachis hypogaea HOM05D005584 ORTHO05D006809 5.7e-92 341.3 231 75.3
arahy.Tifrunner.gnm1.ann1.5FW2L6 Arachis hypogaea HOM05D005584 ORTHO05D006809 5.7e-92 341.3 231 75.3
Phvul.011G052800 Phaseolus vulgaris HOM05D005584 ORTHO05D006809 2.9e-88 328.9 223 74.4
Gohir.A01G162200 Gossypium hirsutum HOM05D005584 ORTHO05D006809 2.4e-82 309.3 229 68.6
Gohir.D08G021700 Gossypium hirsutum HOM05D005584 ORTHO05D006809 5.9e-81 304.7 229 67.2
Thecc.02G253500 Theobroma cacao HOM05D005584 ORTHO05D006809 2.9e-80 302.4 229 67.7
COL.COLO4_24203 Corchorus olitorius HOM05D005584 ORTHO05D006809 5.0e-80 301.6 229 68.1
Gohir.D05G347832 Gossypium hirsutum HOM05D005584 ORTHO05D006809 1.1e-79 300.4 229 66.8
Duzib251G0376 Durio zibethinus HOM05D005584 ORTHO05D006809 2.5e-79 299.3 229 66.8
Manes.12G026800 Manihot esculenta HOM05D005584 ORTHO05D006809 3.2e-79 298.9 231 68.0
Gohir.D01G149500 Gossypium hirsutum HOM05D005584 ORTHO05D006809 5.5e-79 298.1 229 66.4
Atru.chr11.2060 Acer truncatum HOM05D005584 ORTHO05D006809 4.7e-78 295.0 230 66.1
TPR.G23699 Trifolium pratense HOM05D005584 ORTHO05D006809 4.7e-78 295.0 222 69.8
GSVIVG01013774001 Vitis vinifera HOM05D005584 ORTHO05D006809 8.0e-78 294.3 234 65.4
CSS0030415 Camellia sinensis var. sinensis HOM05D005584 ORTHO05D006809 1.0e-77 293.9 227 67.4
TAR374G1289 Trochodendron aralioides HOM05D005584 ORTHO05D006809 1.8e-77 293.1 231 66.2
QL03p059496 Quercus lobata HOM05D005584 ORTHO05D006809 2.3e-77 292.7 236 65.7
Hma1.2p1_0587F.1_g184080 Hydrangea macrophylla HOM05D005584 ORTHO05D006809 3.0e-77 292.4 231 67.1
CiPaw.05G185800 Carya illinoinensis HOM05D005584 ORTHO05D006809 4.0e-77 292.0 231 67.1
FvH4_3g23340 Fragaria vesca HOM05D005584 ORTHO05D006809 6.8e-77 291.2 231 67.1
VMungo1127G1231 Vigna mungo HOM05D005584 ORTHO05D006809 6.8e-77 291.2 198 74.2
RcHm_v2.0_Chr5g0041131 Rosa chinensis HOM05D005584 ORTHO05D006809 1.5e-76 290.0 231 67.5
CsaV3_2G024710 Cucumis sativus L. HOM05D005584 ORTHO05D006809 2.0e-76 289.7 227 67.0
Potri.009G167600 Populus trichocarpa HOM05D005584 ORTHO05D006809 2.0e-76 289.7 239 65.7
Ciclev10032655m.g Citrus clementina HOM05D005584 ORTHO05D006809 3.4e-76 288.9 231 66.2
PGR142G0158 Punica granatum HOM05D005584 ORTHO05D006809 3.4e-76 288.9 226 68.1
MD11G1211500 Malus domestica HOM05D005584 ORTHO05D006809 4.4e-76 288.5 231 64.5
FAN16G0047 Fragaria x ananassa HOM05D005584 ORTHO05D006809 5.7e-76 288.1 231 66.7
Prupe.4G221000 Prunus persica HOM05D005584 ORTHO05D006809 5.7e-76 288.1 232 64.7
Haze_12208 Corylus avellana HOM05D005584 ORTHO05D006809 7.5e-76 287.7 223 67.7
Cpa.g.sc69.68 Carica papaya HOM05D005584 ORTHO05D006809 9.8e-76 287.3 231 64.1
Sabra09G0130200 Salix brachista HOM05D005584 ORTHO05D006809 1.3e-75 287.0 236 64.8
TWI18G1102 Tripterygium wilfordii HOM05D005584 ORTHO05D006809 1.7e-75 286.6 233 66.1
Dinv15274 Davidia involucrata HOM05D001482 ORTHO05D001499 4.9e-75 285.0 234 65.4
CSS0021029 Camellia sinensis var. sinensis HOM05D005584 ORTHO05D006809 6.3e-75 284.6 224 66.1
Eucgr.K03598 Eucalyptus grandis HOM05D005584 ORTHO05D006809 6.3e-75 284.6 229 65.1
FAN21G3548 Fragaria x ananassa HOM05D005584 ORTHO05D006809 1.4e-74 283.5 231 66.2
FAN25G2737 Fragaria x ananassa HOM05D005584 ORTHO05D006809 1.8e-74 283.1 231 66.7
Glyma.12G050500 Glycine max HOM05D005584 ORTHO05D006809 3.1e-74 282.3 179 77.7
vmacro01156 Vaccinium macrocarpon HOM05D005584 ORTHO05D006809 3.1e-74 282.3 227 65.6
AL4G22490 Arabidopsis lyrata HOM05D005584 ORTHO05D006809 2.0e-73 279.6 233 63.5
Sed0009924 Sechium edule HOM05D005584 ORTHO05D006809 2.0e-73 279.6 231 64.9
Carub.0004s0855 Capsella rubella HOM05D005584 ORTHO05D006809 2.7e-73 279.3 229 63.8
Nn4g22723 Nelumbo nucifera HOM05D005584 ORTHO05D006809 4.5e-73 278.5 233 62.7
CANSAT56G2850 Cannabis sativa HOM05D005584 ORTHO05D006809 5.9e-73 278.1 236 62.3
MBI10_g28000_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 2.3e-72 276.2 227 63.4
Nn2g14080 Nelumbo nucifera HOM05D005584 ORTHO05D006809 2.3e-72 276.2 233 62.7
Sopen08g021760 Solanum pennellii HOM05D005584 ORTHO05D006809 1.1e-71 273.9 233 63.5
Actinidia08155 Actinidia chinensis HOM05D005584 ORTHO05D006809 1.9e-71 273.1 234 64.5
Oeu056410.1 Olea europaea HOM05D005584 ORTHO05D006809 1.9e-71 273.1 224 61.6
Cc08_g15830 Coffea canephora HOM05D005584 ORTHO05D006809 2.5e-71 272.7 223 63.2
PSO017G5970 Papaver somniferum HOM05D005584 ORTHO05D006809 3.3e-71 272.3 230 63.0
PGSC0003DMG400033619 Solanum tuberosum HOM05D005584 ORTHO05D006809 3.3e-71 272.3 233 62.7
MSTRG.2403 Avicennia marina HOM05D005584 ORTHO05D006809 4.3e-71 271.9 226 61.1
Aqoxy3G01083 Aquilegia oxysepala HOM05D005584 ORTHO05D006809 5.6e-71 271.6 224 64.3
Thhalv10017205m.g Eutrema salsugineum HOM05D005584 ORTHO05D006809 2.8e-70 269.2 232 60.8
Solyc08g067820.3 Solanum lycopersicum HOM05D005584 ORTHO05D006809 3.6e-70 268.9 233 62.7
Migut.E00177 Erythranthe guttata HOM05D005584 ORTHO05D006809 4.7e-70 268.5 236 60.2
PSO478G2901 Papaver somniferum HOM05D005584 ORTHO05D006809 4.7e-70 268.5 235 61.7
A07p18380 Brassica napus HOM05D005584 ORTHO05D006809 6.1e-70 268.1 232 60.3
BraA07t29554Z Brassica rapa HOM05D005584 ORTHO05D006809 6.1e-70 268.1 232 60.3
Rhsim12G0043700 Rhododendron simsii HOM05D005584 ORTHO05D006809 6.1e-70 268.1 241 61.0
Sp4g10620 Schrenkiella parvula HOM05D005584 ORTHO05D006809 8.0e-70 267.7 236 61.9
BcaC02g10906 Brassica carinata HOM05D005584 ORTHO05D006809 1.4e-69 266.9 232 60.8
ECA233G2638 Erigeron canadensis HOM05D005584 ORTHO05D006809 1.8e-69 266.5 230 62.2
C04p23810 Brassica napus HOM05D005584 ORTHO05D006809 4.0e-69 265.4 232 60.3
CARHR120490 Cardamine hirsuta HOM05D005584 ORTHO05D006809 4.0e-69 265.4 230 61.7
Lsat_1_v5_gn_9_120260 Lactuca sativa HOM05D005584 ORTHO05D006809 8.9e-69 264.2 234 61.1
BolC4t23879H Brassica oleracea HOM05D005584 ORTHO05D006809 2.0e-68 263.1 232 59.9
AUR62014068 Chenopodium quinoa HOM05D005584 ORTHO05D006809 7.5e-68 261.2 229 59.0
Cfa009174 Carpinus fangiana HOM05D005584 ORTHO05D006809 3.7e-67 258.8 203 66.0
FAN11G0752 Fragaria x ananassa HOM05D005584 ORTHO05D006809 3.7e-67 258.8 205 65.9
BcaB02g10116 Brassica carinata HOM05D005584 ORTHO05D006809 1.2e-65 253.8 203 61.6
ClCG08G017930 Citrullus lanatus HOM05D005584 ORTHO05D006809 1.2e-65 253.8 208 64.9
Peaxi162Scf00105g01417 Petunia axillaris HOM05D005584 ORTHO05D006809 2.3e-64 249.6 225 59.6
Hund25366 Selenicereus undatus HOM05D005584 ORTHO05D003410 9.5e-63 244.2 272 51.8
SalBow8G4058 Salvia bowleyana HOM05D005584 ORTHO05D006809 2.1e-62 243.0 219 59.4
Aa31LG5G8210 Aethionema arabicum HOM05D005584 ORTHO05D006809 4.7e-62 241.9 260 52.7
HanXRQChr12g0371541 Helianthus annuus HOM05D005584 ORTHO05D006809 1.4e-61 240.4 203 61.6
HPP92_004538 Vanilla planifolia HOM05D005584 ORTHO05D006809 5.2e-61 238.4 212 61.8
Gorai.009G374800 Gossypium raimondii HOM05D005584 ORTHO05D006809 1.2e-60 237.3 229 57.6
unitig_62.g23668 Utricularia gibba HOM05D005584 ORTHO05D006809 1.5e-60 236.9 225 56.9
SGA_v2.0_scaffold57G20112 Striga asiatica HOM05D005584 ORTHO05D006809 2.9e-59 232.6 211 58.3
AT5G27300 Arabidopsis thaliana HOM05D005584 ORTHO05D006809 8.3e-59 231.1 219 58.0
TPR.G25316 Trifolium pratense HOM05D005584 ORTHO05D006809 6.0e-57 224.9 122 86.9
Gorai.002G185600 Gossypium raimondii HOM05D005584 ORTHO05D006809 1.0e-56 224.2 224 57.1
Nitab4.5_0000125g0200 Nicotiana tabacum HOM05D005584 ORTHO05D006809 8.6e-56 221.1 130 80.0
Zm00001eb209860 Zea mays HOM05D005584 ORTHO05D006809 3.3e-55 219.2 257 49.4
Nitab4.5_0006579g0040 Nicotiana tabacum HOM05D005584 ORTHO05D006809 4.3e-55 218.8 146 71.9
Lj6A807T86 Lonicera japonica HOM05D005584 ORTHO05D006809 6.2e-54 214.9 233 55.4
EL10Ac6g13701 Beta vulgaris HOM05D005584 ORTHO05D006809 1.4e-53 213.8 232 53.0
Lsat_1_v5_gn_8_155560 Lactuca sativa HOM05D005584 ORTHO05D006809 6.8e-53 211.5 202 57.9
CDE06G1284 Ceratophyllum demersum HOM05D005584 ORTHO05D006809 8.3e-51 204.5 224 50.4
SGA_v2.0_scaffold74G24685 Striga asiatica HOM05D005584 ORTHO05D006809 3.5e-49 199.1 198 53.0
ATR1091G072 Amborella trichopoda HOM05D005584 ORTHO05D006809 4.6e-49 198.7 206 53.4
AUR62005408 Chenopodium quinoa HOM05D005584 ORTHO05D006809 1.0e-48 197.6 229 50.2
Hma1.2p1_0223F.1_g094390 Hydrangea macrophylla HOM05D005584 ORTHO05D006809 8.6e-48 194.5 179 61.5
MELO3C010671.2 Cucumis melo HOM05D005584 ORTHO05D006809 3.6e-46 189.1 223 49.8
Dinv24830 Davidia involucrata HOM05D005584 ORTHO05D006809 1.4e-45 187.2 179 59.8
BcaB06g28170 Brassica carinata HOM05D005584 ORTHO05D006809 3.1e-45 186.0 117 72.6
SEGI_24248 Sequoiadendron giganteum HOM05D005584 ORTHO05D006809 8.9e-45 184.5 254 45.3
Potri.006G221301 Populus trichocarpa HOM05D005584 ORTHO05D006809 1.3e-43 180.6 216 50.5
Eucgr.D00612 Eucalyptus grandis HOM05D005584 ORTHO05D006809 3.8e-43 179.1 148 60.8
Mapoly0029s0094 Marchantia polymorpha HOM05D005584 ORTHO05D006809 6.4e-43 178.3 245 46.5
CANSAT64G2516 Cannabis sativa HOM05D002890 ORTHO05D005855 1.9e-42 176.8 96 80.2
Gorai.001G098200 Gossypium raimondii HOM05D005584 ORTHO05D006809 2.1e-41 173.3 209 47.4
Sc11g0001080 Simmondsia chinensis HOM05D005584 ORTHO05D006809 1.3e-40 170.6 176 54.0
DCAR_026533 Daucus carota HOM05D005584 ORTHO05D006809 3.0e-40 169.5 173 57.2
AT2G27790 Arabidopsis thaliana HOM05D005584 ORTHO05D006809 5.6e-39 165.2 195 49.7
Ah.02g130030 Amaranthus hybridus HOM05D005584 ORTHO05D006809 7.3e-39 164.9 183 53.6
Pp3c16_13430 Physcomitrium patens HOM05D005584 ORTHO05D006809 2.8e-38 162.9 258 43.0
CAN.G21.11 Capsicum annuum HOM05D005584 ORTHO05D006809 9.9e-28 127.9 104 64.4
SHI17678 Sapria himalayana HOM05D005584 ORTHO05D006809 3.2e-26 122.9 70 82.9
QL01p007518 Quercus lobata HOM05D005584 ORTHO05D006809 9.3e-26 121.3 170 44.7
Hund18879 Selenicereus undatus HOM05D005584 ORTHO05D006809 3.6e-22 109.4 127 48.8
COL.COLO4_24201 Corchorus olitorius HOM05D005584 ORTHO05D006809 6.2e-22 108.6 57 80.7
Ca_05838_v3 Cicer arietinum L. HOM05D005584 ORTHO05D006809 4.9e-19 99.0 49 91.8
CBR_g19306 Chara braunii HOM05D005584 ORTHO05D006809 1.4e-18 97.4 99 53.5
SMO361G0752 Selaginella moellendorffii HOM05D005584 ORTHO05D006809 1.4e-18 97.4 67 62.7
CAN.G414.8 Capsicum annuum HOM05D000928 ORTHO05D001186 1.3e-16 90.9 50 76.0
BcaB05g23234 Brassica carinata HOM05D005584 ORTHO05D006809 1.8e-16 90.5 98 48.0
Gorai.004G016800 Gossypium raimondii HOM05D005584 ORTHO05D006809 3.3e-15 86.3 65 70.8
MBI12_g21981_MAGBIO Magnolia biondii HOM05D001465 ORTHO05D001434 1.1e-13 81.3 48 79.2
Os02g0105000 Oryza sativa ssp. japonica HOM05D005584 ORTHO05D006809 1.8e-13 80.5 58 69.0
MBI02_g44783_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 2.4e-13 80.1 48 79.2
MBI02_g20871_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 3.1e-13 79.7 48 79.2
MBI02_g25373_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 6.9e-13 78.6 48 77.1
MBI14_g03623_MAGBIO Magnolia biondii HOM05D000013 ORTHO05D006809 7.6e-12 75.1 96 46.9
MBI19_g26621_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 6.5e-11 72.0 67 55.2
MBI14_g10639_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 1.1e-10 71.2 43 76.7
Glyma.11G125900 Glycine max HOM05D005584 ORTHO05D006809 7.9e-09 65.1 29 100.0
MBI03_g02127_MAGBIO Magnolia biondii HOM05D002786 ORTHO05D006809 6.7e-08 62.0 42 66.7
Gohir.D07G091700 Gossypium hirsutum HOM05D005584 ORTHO05D006809 2.5e-07 60.1 50 64.0
Gohir.A07G086801 Gossypium hirsutum HOM05D005584 ORTHO05D006809 2.8e-06 56.6 50 62.0


User provided reference genes

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