Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1C829T6 Lonicera japonica HOM05D005043 ORTHO05D006182 5.7e-189 664.1 329 100.0
Dinv18365 Davidia involucrata HOM05D005043 ORTHO05D006182 6.6e-137 491.1 327 75.5
GSVIVG01014196001 Vitis vinifera HOM05D005043 ORTHO05D006182 2.4e-131 472.6 349 69.1
TAR636G1993 Trochodendron aralioides HOM05D005043 ORTHO05D006182 1.2e-130 470.3 339 69.9
Oeu031030.1 Olea europaea HOM05D005043 ORTHO05D006182 4.6e-130 468.4 346 69.7
Migut.M00727 Erythranthe guttata HOM05D005043 ORTHO05D006182 7.8e-130 467.6 325 73.5
Gohir.D01G042722 Gossypium hirsutum HOM05D005043 ORTHO05D006182 1.7e-129 466.5 332 70.8
Gorai.002G054600 Gossypium raimondii HOM05D005043 ORTHO05D006182 1.7e-129 466.5 332 70.8
COL.COLO4_17542 Corchorus olitorius HOM05D005043 ORTHO05D006182 6.6e-129 464.5 327 71.3
Prupe.4G164600 Prunus persica HOM05D005043 ORTHO05D006182 1.9e-128 463.0 347 68.0
Ciclev10023741m.g Citrus clementina HOM05D005043 ORTHO05D006182 2.5e-128 462.6 338 70.4
MSTRG.12865 Avicennia marina HOM05D005043 ORTHO05D006182 7.3e-128 461.1 327 71.6
Gohir.A01G054300 Gossypium hirsutum HOM05D005043 ORTHO05D006182 1.2e-127 460.3 332 70.5
Cpa.g.sc77.9 Carica papaya HOM05D005043 ORTHO05D006182 2.8e-127 459.1 329 70.8
Hma1.2p1_0290F.1_g114850 Hydrangea macrophylla HOM05D005043 ORTHO05D006182 3.6e-127 458.8 347 68.6
MD11G1263900 Malus domestica HOM05D005043 ORTHO05D006182 3.6e-127 458.8 346 67.6
Potri.001G390500 Populus trichocarpa HOM05D005043 ORTHO05D006182 4.7e-127 458.4 330 71.5
Thecc.07G117100 Theobroma cacao HOM05D005043 ORTHO05D006182 8.9e-126 454.1 327 70.6
TWI38G0078 Tripterygium wilfordii HOM05D005043 ORTHO05D006182 3.4e-125 452.2 328 67.4
Duzib213G0837 Durio zibethinus HOM05D005043 ORTHO05D006182 7.5e-125 451.1 335 68.1
PGR083G1657 Punica granatum HOM05D005043 ORTHO05D006182 9.9e-125 450.7 344 67.4
Atru.chr2.2132 Acer truncatum HOM05D005043 ORTHO05D006182 2.2e-124 449.5 325 68.9
Sabra16G0255900 Salix brachista HOM05D005043 ORTHO05D006182 2.2e-124 449.5 330 69.7
SGA_v2.0_scaffold70G23376 Striga asiatica HOM05D005043 ORTHO05D006182 5.4e-123 444.9 339 67.6
Nn7g37328 Nelumbo nucifera HOM05D005043 ORTHO05D006182 9.2e-123 444.1 364 63.7
Eucgr.F01242 Eucalyptus grandis HOM05D005043 ORTHO05D006182 4.6e-122 441.8 350 64.0
Manes.15G094900 Manihot esculenta HOM05D005043 ORTHO05D006182 7.8e-122 441.0 343 67.6
THA.LOC104822566 Tarenaya hassleriana HOM05D005043 ORTHO05D006182 7.8e-122 441.0 348 64.7
CiPaw.11G160200 Carya illinoinensis HOM05D005043 ORTHO05D006182 1.3e-121 440.3 329 68.4
Rhsim06G0208200 Rhododendron simsii HOM05D005043 ORTHO05D006182 1.3e-121 440.3 346 65.9
RcHm_v2.0_Chr5g0030901 Rosa chinensis HOM05D005043 ORTHO05D006182 2.3e-121 439.5 336 66.4
Ca_26224_v3 Cicer arietinum L. HOM05D005043 ORTHO05D006182 3.9e-121 438.7 335 67.2
Phvul.011G162300 Phaseolus vulgaris HOM05D005043 ORTHO05D006182 1.1e-120 437.2 336 65.2
HanXRQChr13g0390281 Helianthus annuus HOM05D005043 ORTHO05D006182 1.9e-120 436.4 325 67.7
HanXRQChr12g0362951 Helianthus annuus HOM05D005043 ORTHO05D006182 5.6e-120 434.9 327 67.9
CANSAT35G1445 Cannabis sativa HOM05D005043 ORTHO05D006182 7.3e-120 434.5 335 66.3
Cc05_g11070 Coffea canephora HOM05D005043 ORTHO05D006182 7.3e-120 434.5 345 63.5
MBI06_g29324_MAGBIO Magnolia biondii HOM05D005043 ORTHO05D006182 6.2e-119 431.4 428 55.4
Lalb_Chr03g0031161 Lupinus albus HOM05D005043 ORTHO05D006182 8.1e-119 431.0 336 64.9
Medtr6g466500 Medicago truncatula HOM05D005043 ORTHO05D006182 1.1e-118 430.6 343 65.0
Sp3g13100 Schrenkiella parvula HOM05D005043 ORTHO05D006182 1.8e-118 429.9 356 62.6
BolC3t17001H Brassica oleracea HOM05D005043 ORTHO05D006182 3.1e-118 429.1 342 64.6
Solyc07g062430.3 Solanum lycopersicum HOM05D005043 ORTHO05D006182 3.1e-118 429.1 342 65.2
DCAR_017172 Daucus carota HOM05D005043 ORTHO05D006182 4.0e-118 428.7 328 66.5
A05p34520 Brassica napus HOM05D005043 ORTHO05D006182 5.2e-118 428.3 356 62.4
BraA05t22272Z Brassica rapa HOM05D005043 ORTHO05D006182 5.2e-118 428.3 356 62.4
Sopen07g030670 Solanum pennellii HOM05D005043 ORTHO05D006182 5.2e-118 428.3 339 64.6
BcaB06g29516 Brassica carinata HOM05D005043 ORTHO05D006182 8.9e-118 427.6 356 62.4
Sed0006465 Sechium edule HOM05D005043 ORTHO05D006182 1.2e-117 427.2 328 66.5
AL3G27210 Arabidopsis lyrata HOM05D005043 ORTHO05D006182 4.4e-117 425.2 363 62.3
C03p47310 Brassica napus HOM05D005043 ORTHO05D006182 4.4e-117 425.2 342 64.0
BcaB06g25330 Brassica carinata HOM05D005043 ORTHO05D006182 5.8e-117 424.9 357 62.2
SalBow8G1024 Salvia bowleyana HOM05D005043 ORTHO05D006182 5.8e-117 424.9 321 69.5
Glyma.12G157700 Glycine max HOM05D005043 ORTHO05D006182 7.6e-117 424.5 357 60.2
C05p52260 Brassica napus HOM05D005043 ORTHO05D006182 2.2e-116 422.9 357 62.2
Carub.0003s1455 Capsella rubella HOM05D005043 ORTHO05D006182 2.2e-116 422.9 360 62.5
BolC5t33915H Brassica oleracea HOM05D005043 ORTHO05D006182 2.9e-116 422.5 351 62.4
arahy.Tifrunner.gnm1.ann1.NUK3H0 Arachis hypogaea HOM05D005043 ORTHO05D006182 6.4e-116 421.4 338 63.9
PGSC0003DMG400007070 Solanum tuberosum HOM05D005043 ORTHO05D006182 8.4e-116 421.0 335 65.7
A03p39040 Brassica napus HOM05D005043 ORTHO05D006182 1.4e-115 420.2 342 63.2
BraA03t13053Z Brassica rapa HOM05D005043 ORTHO05D006182 1.4e-115 420.2 342 63.2
Aqoxy7G03872 Aquilegia oxysepala HOM05D005043 ORTHO05D006182 2.4e-115 419.5 322 64.3
ClCG11G017440 Citrullus lanatus HOM05D005043 ORTHO05D006182 5.4e-115 418.3 355 61.1
ECA240G3232 Erigeron canadensis HOM05D005043 ORTHO05D006182 5.4e-115 418.3 326 64.1
FAN21G3659 Fragaria x ananassa HOM05D005043 ORTHO05D006182 7.1e-115 417.9 319 65.8
AT3G14890 Arabidopsis thaliana HOM05D005043 ORTHO05D006182 9.2e-115 417.5 363 61.7
FAN11G3478 Fragaria x ananassa HOM05D005043 ORTHO05D006182 1.6e-114 416.8 319 66.5
FAN25G1853 Fragaria x ananassa HOM05D005043 ORTHO05D006182 1.6e-114 416.8 319 66.8
CAN.G375.16 Capsicum annuum HOM05D005043 ORTHO05D006182 2.1e-114 416.4 341 63.3
FvH4_3g18270 Fragaria vesca HOM05D005043 ORTHO05D006182 2.7e-114 416.0 319 66.5
CsaV3_4G033100 Cucumis sativus L. HOM05D005043 ORTHO05D006182 3.5e-114 415.6 350 61.7
Thhalv10020510m.g Eutrema salsugineum HOM05D005043 ORTHO05D006182 3.5e-114 415.6 352 60.2
arahy.Tifrunner.gnm1.ann1.5E18AM Arachis hypogaea HOM05D005043 ORTHO05D006182 4.6e-114 415.2 344 62.8
Peaxi162Scf00111g01457 Petunia axillaris HOM05D005043 ORTHO05D006182 6.0e-114 414.8 343 61.8
CARHR089830 Cardamine hirsuta HOM05D005043 ORTHO05D006182 1.0e-113 414.1 356 60.7
vmacro11941 Vaccinium macrocarpon HOM05D005043 ORTHO05D006182 1.0e-113 414.1 453 51.4
Aa31LG8G2100 Aethionema arabicum HOM05D005043 ORTHO05D006182 1.3e-113 413.7 356 61.2
FAN16G3394 Fragaria x ananassa HOM05D005043 ORTHO05D006182 1.3e-113 413.7 319 65.8
PSO478G3490 Papaver somniferum HOM05D005043 ORTHO05D006182 3.9e-113 412.1 326 62.9
EL10Ac4g08345 Beta vulgaris HOM05D005043 ORTHO05D006182 5.1e-113 411.8 345 62.3
Haze_09322 Corylus avellana HOM05D005043 ORTHO05D006182 5.1e-113 411.8 367 60.5
CDE09G1444 Ceratophyllum demersum HOM05D005043 ORTHO05D006182 6.6e-113 411.4 343 62.1
Lsat_1_v5_gn_9_99860 Lactuca sativa HOM05D005043 ORTHO05D006182 8.7e-113 411.0 327 63.9
PSO782G2110 Papaver somniferum HOM05D005043 ORTHO05D006182 9.6e-112 407.5 341 61.6
AUR62019576 Chenopodium quinoa HOM05D005043 ORTHO05D006182 2.8e-111 406.0 361 59.0
VMungo1127G0129 Vigna mungo HOM05D005043 ORTHO05D006182 7.6e-109 397.9 424 51.2
PSO384G1010 Papaver somniferum HOM05D005043 ORTHO05D006182 1.9e-107 393.3 372 57.8
SalBow1G3547 Salvia bowleyana HOM05D005043 ORTHO05D006182 3.9e-105 385.6 321 64.8
TPR.G12585 Trifolium pratense HOM05D005043 ORTHO05D006182 1.9e-104 383.3 296 66.9
vmacro23467 Vaccinium macrocarpon HOM05D005043 ORTHO05D006182 1.1e-99 367.5 421 51.3
Glyma.06G229100 Glycine max HOM05D005043 ORTHO05D006182 1.1e-96 357.5 249 70.3
Lj3g0009561 Lotus japonicus HOM05D005043 ORTHO05D006182 3.7e-95 352.4 303 61.4
vmacro23385 Vaccinium macrocarpon HOM05D005043 ORTHO05D006182 1.8e-94 350.1 409 49.1
Lalb_Chr19g0133801 Lupinus albus HOM05D005043 ORTHO05D006182 2.6e-93 346.3 208 77.4
MELO3C025641.2 Cucumis melo HOM05D005043 ORTHO05D006182 7.1e-91 338.2 344 54.7
ATR1131G028 Amborella trichopoda HOM05D005043 ORTHO05D006182 1.5e-88 330.5 302 56.0
unitig_749.g13541 Utricularia gibba HOM05D005043 ORTHO05D006182 1.3e-87 327.4 288 60.1
arahy.Tifrunner.gnm1.ann1.3VV2Z3 Arachis hypogaea HOM05D005043 ORTHO05D006182 2.9e-84 316.2 205 72.2
Os01g0737300 Oryza sativa ssp. japonica HOM05D005043 ORTHO05D006182 1.9e-80 303.5 298 54.0
Nitab4.5_0006953g0040 Nicotiana tabacum HOM05D005043 ORTHO05D006182 3.0e-73 279.6 339 47.5
arahy.Tifrunner.gnm1.ann1.5IY6XE Arachis hypogaea HOM05D005043 ORTHO05D006182 5.1e-73 278.9 205 66.3
Pp3c6_17140 Physcomitrium patens HOM05D005043 ORTHO05D006182 8.8e-73 278.1 362 46.1
HPP92_009836 Vanilla planifolia HOM05D005043 ORTHO05D006182 1.2e-69 267.7 171 73.7
CBR_g66772 Chara braunii HOM05D005043 ORTHO05D006182 2.5e-67 260.0 348 46.6
Sc16g0007590 Simmondsia chinensis HOM05D005043 ORTHO05D006182 1.6e-66 257.3 289 50.9
QL08p026231 Quercus lobata HOM05D005043 ORTHO05D006182 1.1e-64 251.1 145 79.3
Mapoly0056s0069 Marchantia polymorpha HOM05D005043 ORTHO05D006182 3.3e-64 249.6 323 44.3
AUR62042780 Chenopodium quinoa HOM05D005043 ORTHO05D006182 4.4e-64 249.2 142 78.9
AagrBONN_evm.TU.Sc2ySwM_228.1872 Anthoceros agrestis HOM05D005043 ORTHO05D006182 7.4e-64 248.4 286 50.0
SMO137G0206 Selaginella moellendorffii HOM05D005043 ORTHO05D006182 2.2e-63 246.9 185 63.8
Thecc.07G116500 Theobroma cacao HOM05D005043 ORTHO05D006182 1.1e-59 234.6 136 80.9
Nitab4.5_0003565g0060 Nicotiana tabacum HOM05D005043 ORTHO05D006182 2.0e-48 197.2 327 37.9
Ah.04g164250 Amaranthus hybridus HOM05D005043 ORTHO05D006182 1.7e-47 194.1 113 76.1
BcaNung07105 Brassica carinata HOM05D005043 ORTHO05D006182 1.8e-46 190.7 197 53.3
QL08p026221 Quercus lobata HOM05D005043 ORTHO05D006182 5.3e-46 189.1 197 55.3
AUR62042782 Chenopodium quinoa HOM05D005043 ORTHO05D006182 6.3e-39 165.6 195 49.2
Hma1.2p1_0113F.1_g055130 Hydrangea macrophylla HOM05D005043 ORTHO05D006182 1.2e-29 134.8 93 71.0
MCO04G542 Micromonas commoda HOM05D005043 ORTHO05D006182 2.3e-28 130.6 188 38.8
Psat3g077040 Pisum sativum HOM05D005043 ORTHO05D006182 1.1e-27 128.3 126 54.0
CSS0038261 Camellia sinensis var. sinensis HOM05D005043 ORTHO05D006182 8.0e-26 122.1 92 67.4
Cre09.g388726 Chlamydomonas reinhardtii HOM05D005043 ORTHO05D006182 1.0e-25 121.7 181 38.7
PSO782G5034 Papaver somniferum HOM05D005043 ORTHO05D006182 9.8e-24 115.2 113 54.9
PSO478G1721 Papaver somniferum HOM05D005043 ORTHO05D006182 1.2e-21 108.2 115 52.2
Hund10554 Selenicereus undatus HOM05D005043 ORTHO05D006182 1.3e-20 104.8 103 53.4
PRCOL_00001017 Prasinoderma coloniale HOM05D005043 ORTHO05D006182 3.0e-20 103.6 164 37.8
MSTRG.9725 Avicennia marina HOM05D005043 ORTHO05D000110 3.9e-20 103.2 95 58.9
CSS0039124 Camellia sinensis var. sinensis HOM05D005043 ORTHO05D006182 5.0e-20 102.8 70 70.0
SHI37131 Sapria himalayana HOM05D005043 ORTHO05D006182 5.6e-19 99.4 65 72.3
Zm00001eb153930 Zea mays HOM05D005043 ORTHO05D006182 4.7e-18 96.3 186 34.9
ECA240G0297 Erigeron canadensis HOM05D005043 ORTHO05D006182 8.0e-18 95.5 91 58.2
Psat3g076960 Pisum sativum HOM05D005043 ORTHO05D006182 1.2e-16 91.7 90 57.8
Psat3g076840 Pisum sativum HOM05D005043 ORTHO05D006182 7.5e-16 89.0 90 57.8
Medtr6g052000 Medicago truncatula HOM05D005043 ORTHO05D006182 1.7e-15 87.8 111 48.6
RcHm_v2.0_Chr5g0030891 Rosa chinensis HOM05D005043 ORTHO05D006182 2.2e-15 87.4 117 47.0
FvH4_4g05840 Fragaria vesca HOM05D005043 ORTHO05D006182 2.9e-15 87.0 140 41.4
Actinidia09808 Actinidia chinensis HOM05D005043 ORTHO05D006182 6.4e-15 85.9 176 38.6
Psat3g076920 Pisum sativum HOM05D005043 ORTHO05D006182 8.3e-15 85.5 90 55.6
Medtr6g052005 Medicago truncatula HOM05D005043 ORTHO05D006182 2.7e-13 80.5 44 84.1
SEGI_37980 Sequoiadendron giganteum HOM05D005043 ORTHO05D006182 4.6e-13 79.7 121 42.1
SMO175G0006 Selaginella moellendorffii HOM05D017119 ORTHO05D006182 1.3e-12 78.2 216 28.7
SEGI_01303 Sequoiadendron giganteum HOM05D005043 ORTHO05D006182 1.7e-12 77.8 68 60.3
arahy.Tifrunner.gnm1.ann1.SEI0XU Arachis hypogaea HOM05D000735 ORTHO05D000838 2.3e-12 77.4 75 50.7
CSS0012296 Camellia sinensis var. sinensis HOM05D005043 ORTHO05D006182 5.1e-12 76.3 36 97.2
Medtr6g464930 Medicago truncatula HOM05D005043 ORTHO05D006182 2.5e-11 73.9 47 70.2
TPR.G17654 Trifolium pratense HOM05D005043 ORTHO05D006182 2.5e-11 73.9 52 71.2
Mapoly0154s0015 Marchantia polymorpha HOM05D001448 ORTHO05D005781 1.3e-07 61.6 86 39.5
RcHm_v2.0_Chr1g0352751 Rosa chinensis HOM05D005043 ORTHO05D006182 2.2e-07 60.8 41 61.0
Sc24g0003080 Simmondsia chinensis HOM05D001448 ORTHO05D005781 2.9e-07 60.5 80 38.8
Sc24g0002470 Simmondsia chinensis HOM05D001448 ORTHO05D005781 3.7e-07 60.1 89 37.1
Lj2C1155G3 Lonicera japonica HOM05D001448 ORTHO05D005781 6.4e-07 59.3 85 38.8
MBI18_g10480_MAGBIO Magnolia biondii HOM05D001448 ORTHO05D005781 6.4e-07 59.3 83 37.3
Rhsim01G0266300 Rhododendron simsii HOM05D001448 ORTHO05D005781 1.1e-06 58.5 80 38.8
SMO118G0342 Selaginella moellendorffii HOM05D001448 ORTHO05D005781 1.1e-06 58.5 98 33.7
CDE09G1103 Ceratophyllum demersum HOM05D001448 ORTHO05D005781 1.4e-06 58.2 78 42.3
BcaB02g10384 Brassica carinata HOM05D001448 ORTHO05D005781 1.9e-06 57.8 80 37.5
BcaC02g11226 Brassica carinata HOM05D001448 ORTHO05D005781 1.9e-06 57.8 80 37.5
A05p14280 Brassica napus HOM05D001448 ORTHO05D005781 1.9e-06 57.8 80 37.5
C04p19030 Brassica napus HOM05D001448 ORTHO05D005781 1.9e-06 57.8 80 37.5
BolC4t23436H Brassica oleracea HOM05D001448 ORTHO05D005781 1.9e-06 57.8 80 37.5
Cc01_g18530 Coffea canephora HOM05D001448 ORTHO05D005781 2.4e-06 57.4 83 38.6
Haze_24590 Corylus avellana HOM05D001448 ORTHO05D005781 2.4e-06 57.4 79 38.0
Haze_24594 Corylus avellana HOM05D001448 ORTHO05D005781 2.4e-06 57.4 79 38.0
CARHR124940 Cardamine hirsuta HOM05D001448 ORTHO05D005781 4.1e-06 56.6 80 33.8
Manes.05G087700 Manihot esculenta HOM05D001448 ORTHO05D005781 4.1e-06 56.6 80 36.2
Carub.0004s1263 Capsella rubella HOM05D001448 ORTHO05D005781 5.4e-06 56.2 80 36.2
Cpa.g.sc50.45 Carica papaya HOM05D001448 ORTHO05D005781 5.4e-06 56.2 80 36.2
CBR_g1120 Chara braunii HOM05D001448 ORTHO05D005781 5.4e-06 56.2 80 38.8
Dinv22438 Davidia involucrata HOM05D001448 ORTHO05D005781 5.4e-06 56.2 80 36.2
Os01g0737401 Oryza sativa ssp. japonica HOM05D005043 ORTHO05D006182 7.1e-06 55.8 31 77.4
PSO063G1607 Papaver somniferum HOM05D001448 ORTHO05D005781 9.2e-06 55.5 79 36.7
THA.LOC104800882 Tarenaya hassleriana HOM05D001448 ORTHO05D005781 9.2e-06 55.5 99 34.3


User provided reference genes

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