Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1C677T5 Lonicera japonica HOM05D004503 ORTHO05D005460 0.0e+00 1683.7 839 100.0
Dinv07955 Davidia involucrata HOM05D004503 ORTHO05D005460 0.0e+00 1525.4 835 90.2
GSVIVG01020844001 Vitis vinifera HOM05D004503 ORTHO05D005460 0.0e+00 1508.4 839 88.1
Sopen07g029580 Solanum pennellii HOM05D004503 ORTHO05D005460 0.0e+00 1497.6 837 87.1
Nitab4.5_0002251g0070 Nicotiana tabacum HOM05D004503 ORTHO05D005460 0.0e+00 1495.7 838 87.6
Solyc07g056220.3 Solanum lycopersicum HOM05D004503 ORTHO05D005460 0.0e+00 1494.9 837 87.0
TAR629G1355 Trochodendron aralioides HOM05D004503 ORTHO05D005460 0.0e+00 1489.6 842 87.4
Peaxi162Scf00111g00222 Petunia axillaris HOM05D004503 ORTHO05D005460 0.0e+00 1486.5 901 81.8
CAN.G585.22 Capsicum annuum HOM05D004503 ORTHO05D005460 0.0e+00 1475.3 837 86.3
Actinidia12541 Actinidia chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1460.7 847 85.5
vmacro08730 Vaccinium macrocarpon HOM05D004503 ORTHO05D005460 0.0e+00 1458.4 917 80.5
Lsat_1_v5_gn_8_31680 Lactuca sativa HOM05D004503 ORTHO05D005460 0.0e+00 1452.2 835 84.1
Gorai.001G211500 Gossypium raimondii HOM05D004503 ORTHO05D005460 0.0e+00 1451.8 838 85.3
MSTRG.6739 Avicennia marina HOM05D004503 ORTHO05D005460 0.0e+00 1451.0 842 85.2
CANSAT64G0633 Cannabis sativa HOM05D004503 ORTHO05D005460 0.0e+00 1448.7 842 84.7
HanXRQChr13g0387771 Helianthus annuus HOM05D004503 ORTHO05D005460 0.0e+00 1447.6 842 83.7
Gohir.A07G183000 Gossypium hirsutum HOM05D004503 ORTHO05D005460 0.0e+00 1446.0 845 84.9
Thecc.01G170000 Theobroma cacao HOM05D004503 ORTHO05D005460 0.0e+00 1446.0 845 85.1
Migut.M00558 Erythranthe guttata HOM05D004503 ORTHO05D005460 0.0e+00 1440.2 842 83.6
PGR042G1526 Punica granatum HOM05D004503 ORTHO05D005460 0.0e+00 1437.2 846 83.8
SGA_v2.0_scaffold70G23615 Striga asiatica HOM05D004503 ORTHO05D005460 0.0e+00 1432.9 865 82.0
Cc05_g09730 Coffea canephora HOM05D004503 ORTHO05D005460 0.0e+00 1431.4 842 83.0
COL.COLO4_08894 Corchorus olitorius HOM05D004503 ORTHO05D005460 0.0e+00 1429.5 862 82.4
arahy.Tifrunner.gnm1.ann1.S01VYL Arachis hypogaea HOM05D004503 ORTHO05D005460 0.0e+00 1425.2 839 83.2
TWI14G0297 Tripterygium wilfordii HOM05D004503 ORTHO05D005460 0.0e+00 1424.1 849 83.0
Sc09g0009430 Simmondsia chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1423.3 843 82.9
MD17G1136200 Malus domestica HOM05D004503 ORTHO05D005460 0.0e+00 1422.1 837 83.2
CsaV3_4G031940 Cucumis sativus L. HOM05D004503 ORTHO05D005460 0.0e+00 1419.4 845 82.8
arahy.Tifrunner.gnm1.ann1.96CX7H Arachis hypogaea HOM05D004503 ORTHO05D005460 0.0e+00 1419.1 839 82.8
Ca_14599_v3 Cicer arietinum L. HOM05D004503 ORTHO05D005460 0.0e+00 1419.1 844 82.9
MELO3C026971.2 Cucumis melo HOM05D004503 ORTHO05D005460 0.0e+00 1418.3 845 82.6
CiPaw.13G152400 Carya illinoinensis HOM05D004503 ORTHO05D005460 0.0e+00 1417.9 848 83.8
Glyma.18G109800 Glycine max HOM05D004503 ORTHO05D005460 0.0e+00 1417.9 838 83.1
Medtr0071s0030 Medicago truncatula HOM05D004503 ORTHO05D005460 0.0e+00 1417.9 844 82.7
Medtr3g046640 Medicago truncatula HOM05D004503 ORTHO05D005460 0.0e+00 1417.9 844 82.7
Glyma.08G307900 Glycine max HOM05D004503 ORTHO05D005460 0.0e+00 1416.0 838 82.7
EL10Ac1g01630 Beta vulgaris HOM05D004503 ORTHO05D005460 0.0e+00 1415.6 843 81.0
CSS0024997 Camellia sinensis var. sinensis HOM05D004503 ORTHO05D005460 0.0e+00 1414.8 857 82.8
Prupe.3G176600 Prunus persica HOM05D004503 ORTHO05D005460 0.0e+00 1412.5 845 82.0
Duzib138G1342 Durio zibethinus HOM05D004503 ORTHO05D005460 0.0e+00 1411.4 845 83.3
VMungo0647G0468 Vigna mungo HOM05D004503 ORTHO05D005460 0.0e+00 1410.6 838 82.8
Rhsim12G0009900 Rhododendron simsii HOM05D004503 ORTHO05D005460 0.0e+00 1409.8 865 82.1
Psat5g185680 Pisum sativum HOM05D004503 ORTHO05D005460 0.0e+00 1406.0 844 82.3
Lj6g0014906 Lotus japonicus HOM05D004503 ORTHO05D005460 0.0e+00 1405.6 842 82.1
Lalb_Chr07g0191281 Lupinus albus HOM05D004503 ORTHO05D005460 0.0e+00 1405.6 838 82.5
ECA233G4498 Erigeron canadensis HOM05D004503 ORTHO05D005460 0.0e+00 1403.7 845 81.3
Phvul.006G022400 Phaseolus vulgaris HOM05D004503 ORTHO05D005460 0.0e+00 1403.3 838 82.1
Potri.005G204400 Populus trichocarpa HOM05D004503 ORTHO05D005460 0.0e+00 1402.9 847 81.3
Nn4g24335 Nelumbo nucifera HOM05D004503 ORTHO05D005460 0.0e+00 1402.1 835 82.5
Ciclev10030701m.g Citrus clementina HOM05D004503 ORTHO05D005460 0.0e+00 1399.0 842 82.8
Sed0003027 Sechium edule HOM05D004503 ORTHO05D005460 0.0e+00 1397.9 845 81.3
Atru.chr6.2055 Acer truncatum HOM05D004503 ORTHO05D005460 0.0e+00 1397.1 843 82.7
ClCG11G016490 Citrullus lanatus HOM05D004503 ORTHO05D005460 0.0e+00 1397.1 845 81.7
PSO675G5402 Papaver somniferum HOM05D004503 ORTHO05D005460 0.0e+00 1390.9 839 80.5
Aqoxy1G01732 Aquilegia oxysepala HOM05D004503 ORTHO05D005460 0.0e+00 1390.2 840 80.7
AUR62026613 Chenopodium quinoa HOM05D004503 ORTHO05D005460 0.0e+00 1386.3 842 80.0
Sabra05G0155000 Salix brachista HOM05D004503 ORTHO05D005460 0.0e+00 1386.3 890 77.4
RcHm_v2.0_Chr2g0152001 Rosa chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1385.2 858 78.8
Potri.002G057800 Populus trichocarpa HOM05D004503 ORTHO05D005460 0.0e+00 1382.1 847 80.8
AUR62034921 Chenopodium quinoa HOM05D004503 ORTHO05D005460 0.0e+00 1379.0 842 79.6
THA.LOC104826541 Tarenaya hassleriana HOM05D004503 ORTHO05D005460 0.0e+00 1378.2 854 80.3
QL01p017640 Quercus lobata HOM05D004503 ORTHO05D005460 0.0e+00 1374.4 903 77.4
HanXRQChr13g0403751 Helianthus annuus HOM05D004503 ORTHO05D005460 0.0e+00 1373.2 785 83.9
Hund26670 Selenicereus undatus HOM05D004503 ORTHO05D005460 0.0e+00 1370.9 944 72.8
Cpa.g.sc648.4 Carica papaya HOM05D004503 ORTHO05D005460 0.0e+00 1369.8 850 80.4
Manes.02G088300 Manihot esculenta HOM05D004503 ORTHO05D005460 0.0e+00 1369.8 850 80.6
FAN05G2445 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1368.2 858 78.1
FvH4_6g38590 Fragaria vesca HOM05D004503 ORTHO05D005460 0.0e+00 1363.2 858 78.0
FAN14G5858 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1359.0 858 77.7
HPP92_024264 Vanilla planifolia HOM05D004503 ORTHO05D005460 0.0e+00 1345.9 835 78.3
FAN02G3131 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1337.0 917 72.8
FAN09G1308 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1330.1 917 72.4
Aa31LG5G23690 Aethionema arabicum HOM05D004503 ORTHO05D005460 0.0e+00 1327.8 854 76.3
Gohir.D07G189800 Gossypium hirsutum HOM05D004503 ORTHO05D005460 0.0e+00 1308.1 762 85.2
BcaC01g05572 Brassica carinata HOM05D004503 ORTHO05D005460 0.0e+00 1305.8 855 75.9
C03p24750 Brassica napus HOM05D004503 ORTHO05D005460 0.0e+00 1305.8 855 75.9
BolC3t14864H Brassica oleracea HOM05D004503 ORTHO05D005460 0.0e+00 1305.8 855 75.9
Thhalv10016232m.g Eutrema salsugineum HOM05D004503 ORTHO05D005460 0.0e+00 1305.4 855 75.7
Sp4g20340 Schrenkiella parvula HOM05D004503 ORTHO05D005460 0.0e+00 1304.3 855 75.7
AL4G35000 Arabidopsis lyrata HOM05D004503 ORTHO05D005460 0.0e+00 1303.5 855 75.7
A03p21010 Brassica napus HOM05D004503 ORTHO05D005460 0.0e+00 1303.1 855 75.6
BraA03t11340Z Brassica rapa HOM05D004503 ORTHO05D005460 0.0e+00 1303.1 855 75.6
Carub.0004s1999 Capsella rubella HOM05D004503 ORTHO05D005460 0.0e+00 1301.6 855 75.2
SEGI_01586 Sequoiadendron giganteum HOM05D004503 ORTHO05D005460 0.0e+00 1300.4 835 74.1
CARHR132590 Cardamine hirsuta HOM05D004503 ORTHO05D005460 0.0e+00 1297.7 855 75.1
AT2G38020 Arabidopsis thaliana HOM05D004503 ORTHO05D005460 0.0e+00 1296.6 854 75.3
ATR0772G123 Amborella trichopoda HOM05D004503 ORTHO05D005460 0.0e+00 1287.3 850 73.3
HPP92_024256 Vanilla planifolia HOM05D004503 ORTHO05D005460 0.0e+00 1284.6 835 75.3
DCAR_013322 Daucus carota HOM05D004503 ORTHO05D005460 0.0e+00 1235.7 834 75.7
Eucgr.A02017 Eucalyptus grandis HOM05D004503 ORTHO05D005460 0.0e+00 1223.4 726 82.1
Ah.05g168350 Amaranthus hybridus HOM05D004503 ORTHO05D005460 0.0e+00 1193.7 842 71.1
Cfa009838 Carpinus fangiana HOM05D004503 ORTHO05D005460 0.0e+00 1120.5 851 70.0
Mapoly0052s0038 Marchantia polymorpha HOM05D004503 ORTHO05D005460 0.0e+00 1103.6 837 62.7
Haze_23205 Corylus avellana HOM05D004503 ORTHO05D005460 0.0e+00 1093.2 1141 55.5
Os01g0666800 Oryza sativa ssp. japonica HOM05D004503 ORTHO05D005460 0.0e+00 1084.7 878 64.9
Pp3c13_19740 Physcomitrium patens HOM05D004503 ORTHO05D005460 0.0e+00 1083.9 837 62.0
MBI10_g21107_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 1.4e-303 1046.2 851 67.2
SMO358G0621 Selaginella moellendorffii HOM05D004503 ORTHO05D005460 3.8e-298 1028.1 836 58.6
PSO063G7036 Papaver somniferum HOM05D004503 ORTHO05D005460 4.7e-288 994.6 622 77.0
BcaB01g03734 Brassica carinata HOM05D004503 ORTHO05D005460 1.2e-283 979.9 686 73.5
BcaNung06337 Brassica carinata HOM05D004503 ORTHO05D005460 9.4e-281 970.3 795 64.2
vmacro23147 Vaccinium macrocarpon HOM05D004503 ORTHO05D005460 2.2e-277 959.1 726 69.8
SHI12362 Sapria himalayana HOM05D004503 ORTHO05D005460 5.8e-246 854.7 602 70.4
Nitab4.5_0027860g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 9.2e-236 820.8 472 84.1
BcaC01g05574 Brassica carinata HOM05D004503 ORTHO05D005460 6.0e-227 791.6 675 62.8
Oeu020048.5 Olea europaea HOM05D004503 ORTHO05D005460 1.5e-214 750.4 464 83.0
PGSC0003DMG400017305 Solanum tuberosum HOM05D004503 ORTHO05D005460 9.6e-209 731.1 405 84.9
CDE04G0954 Ceratophyllum demersum HOM05D004503 ORTHO05D005460 2.2e-205 719.9 433 83.6
MBI10_g05864_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 4.8e-200 702.2 601 61.6
CBR_g46726 Chara braunii HOM05D004503 ORTHO05D005460 4.5e-182 642.5 846 41.6
Nitab4.5_0010124g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 1.0e-181 641.3 362 89.2
Oeu010987.1 Olea europaea HOM05D004503 ORTHO05D005460 2.0e-177 627.1 356 83.1
TPR.G25270 Trifolium pratense HOM05D004503 ORTHO05D005460 7.7e-174 615.1 337 90.2
PRCOL_00002554 Prasinoderma coloniale HOM05D004503 ORTHO05D005460 4.1e-167 592.8 856 39.8
Cfa025981 Carpinus fangiana HOM05D004503 ORTHO05D005460 5.0e-141 506.1 825 36.2
Cre03.g199311 Chlamydomonas reinhardtii HOM05D004503 ORTHO05D005460 5.6e-124 449.5 1001 31.1
TPR.G16790 Trifolium pratense HOM05D004503 ORTHO05D005460 6.8e-122 442.6 431 54.8
BcaB02g09224 Brassica carinata HOM05D004503 ORTHO05D005460 9.2e-119 432.2 593 46.0
AL3G43330 Arabidopsis lyrata HOM05D004503 ORTHO05D005460 1.6e-115 421.4 367 63.2
AagrBONN_evm.TU.Sc2ySwM_368.858 Anthoceros agrestis HOM05D004503 ORTHO05D005460 4.7e-115 419.9 327 57.2
MBI10_g02225_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 1.2e-105 388.7 260 70.0
AagrBONN_evm.TU.Sc2ySwM_368.859 Anthoceros agrestis HOM05D004503 ORTHO05D005460 1.3e-101 375.2 329 56.5
Actinidia25072 Actinidia chinensis HOM05D004503 ORTHO05D005460 3.2e-87 327.4 238 71.0
PGR042G2164 Punica granatum HOM05D004503 ORTHO05D005460 1.0e-80 305.8 165 89.1
Sabra02G0047100 Salix brachista HOM05D004503 ORTHO05D005460 9.4e-79 299.3 218 68.3
AagrBONN_evm.TU.Sc2ySwM_117.438 Anthoceros agrestis HOM05D004503 ORTHO05D005460 3.9e-77 293.9 317 49.8
BcaB01g03733 Brassica carinata HOM05D004503 ORTHO05D005460 2.5e-71 274.6 157 79.0
Nitab4.5_0010753g0030 Nicotiana tabacum HOM05D004503 ORTHO05D005460 8.3e-43 179.9 116 72.4
TPR.G20801 Trifolium pratense HOM05D004503 ORTHO05D005460 2.0e-41 175.3 97 83.5
Lsat_1_v5_gn_8_146460 Lactuca sativa HOM05D004503 ORTHO05D005460 7.2e-39 166.8 101 76.2
Lsat_1_v5_gn_2_4101 Lactuca sativa HOM05D004503 ORTHO05D005460 1.0e-37 162.9 108 69.4
Lsat_1_v5_gn_3_97321 Lactuca sativa HOM05D004503 ORTHO05D005460 1.8e-34 152.1 98 77.6
Lsat_1_v5_gn_9_81860 Lactuca sativa HOM05D004503 ORTHO05D005460 4.1e-34 151.0 94 78.7
FvH4_6g38010 Fragaria vesca HOM05D004503 ORTHO05D005460 2.3e-32 145.2 168 52.4
Lsat_1_v5_gn_1_120320 Lactuca sativa HOM05D004503 ORTHO05D005460 5.0e-32 144.1 94 74.5
Lsat_1_v5_gn_5_109060 Lactuca sativa HOM05D004503 ORTHO05D005460 3.3e-31 141.4 106 71.7
Lsat_1_v5_gn_9_102961 Lactuca sativa HOM05D004503 ORTHO05D005460 1.2e-30 139.4 91 74.7
Lsat_1_v5_gn_9_107141 Lactuca sativa HOM05D004503 ORTHO05D005460 1.6e-30 139.0 85 77.6
Lsat_1_v5_gn_4_94880 Lactuca sativa HOM05D001336 ORTHO05D001211 2.3e-29 135.2 87 74.7
Nitab4.5_0010753g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 5.2e-29 134.0 187 47.6
TPR.G6024 Trifolium pratense HOM05D004503 ORTHO05D005460 1.2e-28 132.9 67 88.1
MBI10_g02227_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 3.4e-28 131.3 125 61.6
Lsat_1_v5_gn_6_107780 Lactuca sativa HOM05D004503 ORTHO05D003526 4.4e-28 131.0 96 72.9
Lsat_1_v5_gn_2_120 Lactuca sativa HOM05D003203 ORTHO05D003526 1.3e-27 129.4 113 61.1
Lsat_1_v5_gn_0_13460 Lactuca sativa HOM05D003536 ORTHO05D004233 1.4e-26 125.9 100 67.0
Lsat_1_v5_gn_1_93381 Lactuca sativa HOM05D003203 ORTHO05D003526 2.4e-26 125.2 103 66.0
Lsat_1_v5_gn_8_98160 Lactuca sativa HOM05D004503 ORTHO05D005460 5.0e-24 117.5 96 64.6
Lsat_1_v5_gn_2_105761 Lactuca sativa HOM05D001000 ORTHO05D001896 8.6e-24 116.7 75 68.0
Lsat_1_v5_gn_4_100901 Lactuca sativa HOM05D004503 ORTHO05D005460 5.6e-23 114.0 68 75.0
Lsat_1_v5_gn_2_36800 Lactuca sativa HOM05D004503 ORTHO05D005460 6.8e-21 107.1 61 77.0
Lsat_1_v5_gn_5_27580 Lactuca sativa HOM05D005974 ORTHO05D007201 1.5e-20 105.9 67 76.1
Lsat_1_v5_gn_8_13240 Lactuca sativa HOM05D004503 ORTHO05D005460 4.9e-19 100.9 82 65.9
Lsat_1_v5_gn_8_75300 Lactuca sativa HOM05D004503 ORTHO05D005460 8.3e-19 100.1 115 49.6
Lsat_1_v5_gn_8_84700 Lactuca sativa HOM05D004503 ORTHO05D005460 5.1e-16 90.9 52 78.8
Lsat_1_v5_gn_2_51260 Lactuca sativa HOM05D001336 ORTHO05D001211 8.6e-16 90.1 52 78.8
TPR.G24652 Trifolium pratense HOM05D004503 ORTHO05D005460 2.1e-14 85.5 48 91.7
SalBow8G3309 Salvia bowleyana HOM05D004503 ORTHO05D005460 4.0e-13 81.3 50 80.0
Lsat_1_v5_gn_4_85140 Lactuca sativa HOM05D003203 ORTHO05D003526 1.3e-11 76.3 37 97.3
C04p09630 Brassica napus HOM05D004503 ORTHO05D005460 4.9e-11 74.3 87 48.3
BolC4t22570H Brassica oleracea HOM05D004503 ORTHO05D005460 4.9e-11 74.3 87 48.3
Rhsim08G0005700 Rhododendron simsii HOM05D004503 ORTHO05D037450 1.2e-09 69.7 85 52.9
Lsat_1_v5_gn_8_136521 Lactuca sativa HOM05D004503 ORTHO05D000404 2.1e-09 68.9 80 48.8
Lsat_1_v5_gn_6_24580 Lactuca sativa HOM05D003889 ORTHO05D004407 3.0e-08 65.1 38 86.8
Lsat_1_v5_gn_5_118461 Lactuca sativa HOM05D001336 ORTHO05D001211 2.5e-07 62.0 41 73.2
MBI10_g02226_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 4.3e-07 61.2 34 85.3
Rhsim07G0116000 Rhododendron simsii HOM05D000382 ORTHO05D037450 8.1e-06 57.0 82 48.8


User provided reference genes

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