Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A427G6 Lonicera japonica HOM05D001670 ORTHO05D011598 1.1e-62 243.0 120 100.0
Dinv44111 Davidia involucrata HOM05D001670 ORTHO05D002980 8.2e-45 183.7 114 74.6
Lj9C563G7 Lonicera japonica HOM05D001670 ORTHO05D002980 3.6e-40 168.3 116 68.1
CSS0023490 Camellia sinensis var. sinensis HOM05D001670 ORTHO05D002980 3.3e-38 161.8 111 69.4
CSS0045110 Camellia sinensis var. sinensis HOM05D001670 ORTHO05D002980 3.3e-38 161.8 111 69.4
Peaxi162Scf00377g00038 Petunia axillaris HOM05D001670 ORTHO05D002980 4.1e-36 154.8 112 63.4
Nitab4.5_0000706g0120 Nicotiana tabacum HOM05D001670 ORTHO05D002980 1.5e-35 152.9 112 62.5
vmacro21039 Vaccinium macrocarpon HOM05D001670 ORTHO05D002980 1.5e-35 152.9 124 58.9
Nitab4.5_0002304g0030 Nicotiana tabacum HOM05D001670 ORTHO05D002980 7.7e-35 150.6 112 62.5
Cc02_g24610 Coffea canephora HOM05D001670 ORTHO05D002980 1.3e-34 149.8 114 62.3
CAN.G899.12 Capsicum annuum HOM05D001670 ORTHO05D002980 2.2e-34 149.1 112 60.7
Rhsim01G0135600 Rhododendron simsii HOM05D001670 ORTHO05D002980 2.2e-34 149.1 124 58.1
FAN01G0667 Fragaria x ananassa HOM05D001670 ORTHO05D002980 3.8e-34 148.3 112 61.6
RcHm_v2.0_Chr1g0348711 Rosa chinensis HOM05D001670 ORTHO05D002980 5.0e-34 147.9 112 63.4
FvH4_7g10770 Fragaria vesca HOM05D001670 ORTHO05D002980 1.9e-33 146.0 112 61.6
FAN06G0311 Fragaria x ananassa HOM05D001670 ORTHO05D002980 1.9e-33 146.0 112 61.6
FAN06G1683 Fragaria x ananassa HOM05D001670 ORTHO05D002980 1.9e-33 146.0 112 61.6
FAN10G0390 Fragaria x ananassa HOM05D001670 ORTHO05D002980 2.5e-33 145.6 112 60.7
FAN10G2564 Fragaria x ananassa HOM05D001670 ORTHO05D002980 2.5e-33 145.6 112 60.7
Oeu000038.3 Olea europaea HOM05D001670 ORTHO05D002980 3.2e-33 145.2 109 64.2
Cfa011137 Carpinus fangiana HOM05D001670 ORTHO05D002980 4.2e-33 144.8 117 60.7
FAN03G2300 Fragaria x ananassa HOM05D001670 ORTHO05D002980 5.5e-33 144.4 112 60.7
QL04p035871 Quercus lobata HOM05D001670 ORTHO05D002980 5.5e-33 144.4 112 60.7
Solyc01g090780.3 Solanum lycopersicum HOM05D001670 ORTHO05D002980 5.5e-33 144.4 111 59.5
Sopen01g036510 Solanum pennellii HOM05D001670 ORTHO05D002980 5.5e-33 144.4 111 59.5
Actinidia12668 Actinidia chinensis HOM05D001670 ORTHO05D011598 7.2e-33 144.1 100 69.0
MD02G1214300 Malus domestica HOM05D001670 ORTHO05D002980 7.2e-33 144.1 115 61.7
Duzib268G0141 Durio zibethinus HOM05D001670 ORTHO05D002980 9.4e-33 143.7 111 62.2
MSTRG.20721 Avicennia marina HOM05D001670 ORTHO05D002980 3.6e-32 141.7 114 59.6
Oeu064574.1 Olea europaea HOM05D001670 ORTHO05D002980 3.6e-32 141.7 112 59.8
TAR374G0935 Trochodendron aralioides HOM05D001670 ORTHO05D002980 3.6e-32 141.7 115 58.3
Atru.chr5.219 Acer truncatum HOM05D001670 ORTHO05D002980 4.7e-32 141.4 114 60.5
Thecc.01G385600 Theobroma cacao HOM05D001670 ORTHO05D002980 4.7e-32 141.4 111 62.2
DCAR_025093 Daucus carota HOM05D001670 ORTHO05D002980 6.1e-32 141.0 112 57.1
Haze_02723 Corylus avellana HOM05D001670 ORTHO05D002980 8.0e-32 140.6 117 59.0
Gohir.D11G082433 Gossypium hirsutum HOM05D001670 ORTHO05D002980 8.0e-32 140.6 111 61.3
Gorai.007G088100 Gossypium raimondii HOM05D001670 ORTHO05D002980 8.0e-32 140.6 111 61.3
DCAR_015867 Daucus carota HOM05D001670 ORTHO05D002980 1.0e-31 140.2 112 58.0
Migut.B01578 Erythranthe guttata HOM05D001670 ORTHO05D002980 1.8e-31 139.4 114 57.0
Manes.05G050200 Manihot esculenta HOM05D001670 ORTHO05D002980 2.3e-31 139.0 112 59.8
SGA_v2.0_scaffold399G50813 Striga asiatica HOM05D001670 ORTHO05D002980 2.3e-31 139.0 109 58.7
Lj7C538G19 Lonicera japonica HOM05D001670 ORTHO05D002980 3.0e-31 138.7 75 89.3
Prupe.2G135900 Prunus persica HOM05D001670 ORTHO05D002980 3.0e-31 138.7 109 60.6
Oeu061519.1 Olea europaea HOM05D001670 ORTHO05D002980 3.9e-31 138.3 116 54.3
COL.COLO4_12469 Corchorus olitorius HOM05D001670 ORTHO05D002980 5.2e-31 137.9 111 61.3
SGA_v2.0_scaffold153G36957 Striga asiatica HOM05D001670 ORTHO05D002980 6.7e-31 137.5 114 56.1
Cpa.g.sc914.1 Carica papaya HOM05D001670 ORTHO05D002980 2.0e-30 136.0 116 56.9
Gorai.008G107100 Gossypium raimondii HOM05D001670 ORTHO05D002980 2.6e-30 135.6 111 59.5
MBI04_g09509_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D002980 3.3e-30 135.2 115 56.5
GSVIVG01018721001 Vitis vinifera HOM05D001670 ORTHO05D002980 3.3e-30 135.2 113 56.6
Ciclev10018430m.g Citrus clementina HOM05D001670 ORTHO05D002980 9.7e-30 133.7 114 53.5
Potri.002G143000 Populus trichocarpa HOM05D001670 ORTHO05D002980 2.2e-29 132.5 114 55.3
CANSAT21G0618 Cannabis sativa HOM05D001670 ORTHO05D002980 2.8e-29 132.1 114 57.9
Dinv06565 Davidia involucrata HOM05D001670 ORTHO05D002980 2.8e-29 132.1 112 58.9
Lsat_1_v5_gn_7_10221 Lactuca sativa HOM05D001670 ORTHO05D002980 2.8e-29 132.1 112 54.5
TAR375G0686 Trochodendron aralioides HOM05D001670 ORTHO05D002980 3.7e-29 131.7 112 54.5
Eucgr.E01609 Eucalyptus grandis HOM05D001670 ORTHO05D002980 4.8e-29 131.3 111 58.6
ECA236G0609 Erigeron canadensis HOM05D001670 ORTHO05D002980 6.3e-29 131.0 112 53.6
TAR629G1646 Trochodendron aralioides HOM05D001670 ORTHO05D002980 6.3e-29 131.0 115 55.7
unitig_0.g1315 Utricularia gibba HOM05D001670 ORTHO05D002980 6.3e-29 131.0 112 50.0
Potri.014G058800 Populus trichocarpa HOM05D001670 ORTHO05D002980 1.4e-28 129.8 117 52.1
Sed0002470 Sechium edule HOM05D001670 ORTHO05D002980 1.4e-28 129.8 116 50.0
Duzib133G0195 Durio zibethinus HOM05D001670 ORTHO05D002980 2.4e-28 129.0 111 59.5
HanXRQChr06g0168951 Helianthus annuus HOM05D001670 ORTHO05D002980 3.1e-28 128.6 112 51.8
Manes.01G270100 Manihot esculenta HOM05D001670 ORTHO05D002980 3.1e-28 128.6 114 53.5
Sabra02G0111500 Salix brachista HOM05D001670 ORTHO05D002980 3.1e-28 128.6 114 54.4
HanXRQChr04g0123421 Helianthus annuus HOM05D001670 ORTHO05D002980 5.3e-28 127.9 112 53.6
MD07G1112500 Malus domestica HOM05D001670 ORTHO05D002980 5.3e-28 127.9 109 56.9
Nn6g33938 Nelumbo nucifera HOM05D001670 ORTHO05D002980 7.0e-28 127.5 113 56.6
SalBow5G2000 Salvia bowleyana HOM05D001670 ORTHO05D002980 9.1e-28 127.1 111 50.5
Hund27384 Selenicereus undatus HOM05D001670 ORTHO05D002980 2.0e-27 125.9 108 53.7
TWI59G0301 Tripterygium wilfordii HOM05D001670 ORTHO05D002980 2.0e-27 125.9 111 53.2
ClCG05G000260 Citrullus lanatus HOM05D001670 ORTHO05D002980 2.6e-27 125.6 116 47.4
Psat4g209400 Pisum sativum HOM05D001670 ORTHO05D002980 4.5e-27 124.8 109 52.3
PGR042G0136 Punica granatum HOM05D001670 ORTHO05D002980 4.5e-27 124.8 112 53.6
TWI14G1227 Tripterygium wilfordii HOM05D001670 ORTHO05D002980 4.5e-27 124.8 111 52.3
TPR.G28734 Trifolium pratense HOM05D001670 ORTHO05D002980 7.7e-27 124.0 111 50.5
CsaV3_3G007410 Cucumis sativus L. HOM05D001670 ORTHO05D002980 3.8e-26 121.7 116 46.6
Medtr8g005820 Medicago truncatula HOM05D001670 ORTHO05D002980 1.1e-25 120.2 111 48.6
Sc13g0006690 Simmondsia chinensis HOM05D001670 ORTHO05D002980 1.1e-25 120.2 111 50.5
Phvul.010G056800 Phaseolus vulgaris HOM05D001670 ORTHO05D002980 3.2e-25 118.6 111 48.6
VMungo0331G0876 Vigna mungo HOM05D001670 ORTHO05D002980 4.2e-25 118.2 111 49.5
Aqoxy7G00778 Aquilegia oxysepala HOM05D001670 ORTHO05D002980 1.2e-24 116.7 113 51.3
Glyma.03G118400 Glycine max HOM05D001670 ORTHO05D002980 4.7e-24 114.8 111 46.8
Glyma.07G108700 Glycine max HOM05D001670 ORTHO05D002980 6.1e-24 114.4 111 46.8
Lj3g0005567 Lotus japonicus HOM05D001670 ORTHO05D002980 8.0e-24 114.0 108 47.2
EL10Ac1g00822 Beta vulgaris HOM05D001670 ORTHO05D002980 1.0e-23 113.6 108 47.2
GSVIVG01018178001 Vitis vinifera HOM05D001670 ORTHO05D002980 1.8e-23 112.8 84 60.7
Lalb_Chr13g0290371 Lupinus albus HOM05D001670 ORTHO05D002980 2.3e-23 112.5 108 47.2
Ca_23116_v3 Cicer arietinum L. HOM05D001670 ORTHO05D002980 3.0e-23 112.1 108 48.1
Rhsim03G0166300 Rhododendron simsii HOM05D001670 ORTHO05D002980 4.0e-23 111.7 112 47.3
Aqoxy6G02523 Aquilegia oxysepala HOM05D001670 ORTHO05D002980 8.8e-23 110.5 113 51.3
Atru.chr1.760 Acer truncatum HOM05D001670 ORTHO05D002980 3.3e-22 108.6 113 47.8
ATR0317G075 Amborella trichopoda HOM05D001670 ORTHO05D002980 3.3e-22 108.6 119 43.7
Lalb_Chr07g0195691 Lupinus albus HOM05D001670 ORTHO05D002980 3.3e-22 108.6 108 44.4
MBI15_g32557_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D011598 5.7e-22 107.8 86 59.3
PSO170G5961 Papaver somniferum HOM05D001670 ORTHO05D002980 7.5e-22 107.5 118 47.5
arahy.Tifrunner.gnm1.ann1.1V1Y36 Arachis hypogaea HOM05D001670 ORTHO05D002980 9.7e-22 107.1 108 44.4
arahy.Tifrunner.gnm1.ann1.5NE8AH Arachis hypogaea HOM05D001670 ORTHO05D002980 9.7e-22 107.1 108 44.4
MBI18_g40791_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D011598 1.3e-21 106.7 86 58.1
MBI02_g32970_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D011598 1.7e-21 106.3 86 58.1
MBI17_g44285_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D011598 1.7e-21 106.3 86 58.1
Hund17061 Selenicereus undatus HOM05D001670 ORTHO05D002980 4.8e-21 104.8 107 48.6
MBI16_g24355_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D011598 8.3e-21 104.0 91 52.7
PSO017G3667 Papaver somniferum HOM05D001670 ORTHO05D002980 1.8e-20 102.8 117 46.2
Zm00001eb000340 Zea mays HOM05D001670 ORTHO05D002980 1.8e-20 102.8 118 44.9
CDE11G0683 Ceratophyllum demersum HOM05D001670 ORTHO05D002980 1.6e-19 99.8 113 44.2
Zm00001eb404410 Zea mays HOM05D001670 ORTHO05D002980 1.6e-19 99.8 116 43.1
MBI14_g36712_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D011598 2.0e-19 99.4 96 52.1
SHI13580 Sapria himalayana HOM05D001670 ORTHO05D011598 5.9e-19 97.8 102 49.0
Duzib068G1107 Durio zibethinus HOM05D001670 ORTHO05D002980 7.7e-19 97.4 110 44.5
THA.LOC104814077 Tarenaya hassleriana HOM05D001670 ORTHO05D002980 1.0e-18 97.1 114 39.5
HPP92_007431 Vanilla planifolia HOM05D001670 ORTHO05D002980 3.8e-18 95.1 112 42.0
THA.LOC104801485 Tarenaya hassleriana HOM05D001670 ORTHO05D002980 5.0e-18 94.7 112 39.3
Aa31LG1G11410 Aethionema arabicum HOM05D001670 ORTHO05D002980 4.2e-17 91.7 112 37.5
PSO421G0693 Papaver somniferum HOM05D001670 ORTHO05D002980 1.6e-16 89.7 126 40.5
MBI14_g28585_MAGBIO Magnolia biondii HOM05D011668 ORTHO05D011598 2.1e-16 89.4 98 46.9
Mapoly0037s0011 Marchantia polymorpha HOM05D001670 ORTHO05D002980 1.4e-15 86.7 110 37.3
MBI14_g46623_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D011598 2.3e-15 85.9 71 57.7
Pp3c21_18770 Physcomitrium patens HOM05D001670 ORTHO05D002980 1.2e-14 83.6 113 32.7
HanXRQChr16g0519681 Helianthus annuus HOM05D001670 ORTHO05D011598 2.0e-14 82.8 129 34.1
MBI18_g33676_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D011598 2.0e-14 82.8 112 43.8
AL1G10200 Arabidopsis lyrata HOM05D001670 ORTHO05D002980 2.6e-14 82.4 110 35.5
BcaC07g42342 Brassica carinata HOM05D001670 ORTHO05D002980 2.6e-14 82.4 111 34.2
Carub.0001s0015 Capsella rubella HOM05D001670 ORTHO05D002980 2.6e-14 82.4 111 34.2
Os03g0102300 Oryza sativa ssp. japonica HOM05D001670 ORTHO05D011598 3.4e-14 82.0 116 40.5
AT1G02080 Arabidopsis thaliana HOM05D001670 ORTHO05D002980 4.4e-14 81.6 114 34.2
Thhalv10006521m.g Eutrema salsugineum HOM05D001670 ORTHO05D002980 4.4e-14 81.6 110 36.4
MBI15_g31883_MAGBIO Magnolia biondii HOM05D011668 ORTHO05D011598 4.4e-14 81.6 98 43.9
Os10g0556700 Oryza sativa ssp. japonica HOM05D001670 ORTHO05D002980 9.8e-14 80.5 105 40.0
Sp1g00220 Schrenkiella parvula HOM05D001670 ORTHO05D002980 1.3e-13 80.1 115 33.0
Pp3c5_6540 Physcomitrium patens HOM05D001670 ORTHO05D002980 3.7e-13 78.6 113 37.2
A07p21180 Brassica napus HOM05D001670 ORTHO05D002980 4.8e-13 78.2 113 33.6
BraA07t29805Z Brassica rapa HOM05D001670 ORTHO05D002980 4.8e-13 78.2 113 33.6
CARHR000250 Cardamine hirsuta HOM05D001670 ORTHO05D002980 8.3e-13 77.4 100 38.0
BcaC08g44594 Brassica carinata HOM05D001670 ORTHO05D002980 2.4e-12 75.9 113 33.6
C06p20660 Brassica napus HOM05D001670 ORTHO05D002980 2.4e-12 75.9 113 33.6
BolC6t37249H Brassica oleracea HOM05D001670 ORTHO05D002980 2.4e-12 75.9 113 33.6
PSO104G0201 Papaver somniferum HOM05D001670 ORTHO05D002980 2.4e-12 75.9 134 35.8
BcaB02g07859 Brassica carinata HOM05D001670 ORTHO05D002980 5.4e-12 74.7 113 32.7
CARHR248060 Cardamine hirsuta HOM05D001670 ORTHO05D002980 1.6e-11 73.2 113 31.9
Zm00001eb391310 Zea mays HOM05D001670 ORTHO05D011598 4.5e-11 71.6 74 48.6
MBI05_g15359_MAGBIO Magnolia biondii HOM05D003323 ORTHO05D011598 1.0e-10 70.5 56 58.9
BraA10t42293Z Brassica rapa HOM05D001670 ORTHO05D002980 1.3e-10 70.1 114 35.1
A10p00140 Brassica napus HOM05D001670 ORTHO05D002980 1.7e-10 69.7 114 35.1
MBI14_g39940_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D011598 6.6e-10 67.8 64 51.6
Sabra05G0131800 Salix brachista HOM05D006768 ORTHO05D008436 6.6e-10 67.8 71 45.1
CSS0045688 Camellia sinensis var. sinensis HOM05D001670 ORTHO05D011598 3.3e-09 65.5 55 52.7
C05p00130 Brassica napus HOM05D001670 ORTHO05D002980 5.5e-09 64.7 115 30.4
BolC5t28803H Brassica oleracea HOM05D001670 ORTHO05D002980 5.5e-09 64.7 115 30.4
MELO3C005963.2 Cucumis melo HOM05D001670 ORTHO05D002980 1.0e-07 60.5 37 64.9
CSS0019437 Camellia sinensis var. sinensis HOM05D001670 ORTHO05D011598 3.0e-07 58.9 50 54.0
BolC5t28802H Brassica oleracea HOM05D001670 ORTHO05D041260 4.4e-06 55.1 94 29.8
CDE09G0971 Ceratophyllum demersum HOM05D001670 ORTHO05D002980 5.7e-06 54.7 44 56.8
MBI03_g02276_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D011598 7.5e-06 54.3 80 37.5


User provided reference genes

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