Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A357G13 Lonicera japonica HOM05D000104 ORTHO05D005604 0.0e+00 1231.9 664 100.0
Lj1C354G8 Lonicera japonica HOM05D000104 ORTHO05D005604 5.7e-289 997.3 690 82.2
Dinv08033 Davidia involucrata HOM05D000104 ORTHO05D005604 9.8e-148 528.1 949 43.5
Actinidia16312 Actinidia chinensis HOM05D000104 ORTHO05D005604 3.6e-134 483.0 899 40.4
DCAR_013049 Daucus carota HOM05D000104 ORTHO05D005604 6.6e-128 462.2 891 38.6
COL.COLO4_25219 Corchorus olitorius HOM05D000104 ORTHO05D005604 1.6e-121 441.0 800 40.4
Manes.15G017800 Manihot esculenta HOM05D000104 ORTHO05D005604 4.3e-119 433.0 779 39.9
Potri.010G019150 Populus trichocarpa HOM05D000104 ORTHO05D005604 2.8e-118 430.3 779 40.4
QL06p007127 Quercus lobata HOM05D000104 ORTHO05D005604 4.7e-118 429.5 900 36.9
GSVIVG01017820001 Vitis vinifera HOM05D000104 ORTHO05D005604 4.0e-117 426.4 879 38.0
Potri.008G195900 Populus trichocarpa HOM05D000104 ORTHO05D005604 9.9e-116 421.8 809 38.8
Thecc.04G275900 Theobroma cacao HOM05D000104 ORTHO05D005604 2.2e-115 420.6 807 38.8
Prupe.1G143200 Prunus persica HOM05D000104 ORTHO05D005604 4.9e-115 419.5 876 37.3
CANSAT78G1941 Cannabis sativa HOM05D000104 ORTHO05D005604 1.1e-114 418.3 863 38.6
Cfa015506 Carpinus fangiana HOM05D000104 ORTHO05D005604 2.4e-114 417.2 865 37.6
Atru.chr3.1960 Acer truncatum HOM05D000104 ORTHO05D005604 4.2e-114 416.4 898 36.5
Duzib151G0282 Durio zibethinus HOM05D000104 ORTHO05D005604 2.5e-111 407.1 814 38.7
Duzib212G0880 Durio zibethinus HOM05D000104 ORTHO05D005604 5.4e-106 389.4 822 37.6
Gohir.D09G234100 Gossypium hirsutum HOM05D000104 ORTHO05D005604 4.6e-105 386.3 762 41.2
Gohir.D10G165750 Gossypium hirsutum HOM05D000104 ORTHO05D005604 6.0e-105 386.0 797 37.1
TAR365G0556 Trochodendron aralioides HOM05D000104 ORTHO05D005604 1.0e-104 385.2 1058 33.5
Gohir.A10G101880 Gossypium hirsutum HOM05D000104 ORTHO05D005604 1.7e-104 384.4 797 37.0
RcHm_v2.0_Chr4g0420741 Rosa chinensis HOM05D000104 ORTHO05D005604 2.3e-104 384.0 846 36.8
Haze_01047 Corylus avellana HOM05D000104 ORTHO05D005604 1.1e-103 381.7 689 41.5
Sabra08G0149100 Salix brachista HOM05D000104 ORTHO05D005604 2.5e-103 380.6 815 37.3
TAR362G0998 Trochodendron aralioides HOM05D000104 ORTHO05D005604 2.5e-103 380.6 1079 32.8
CiPaw.02G087300 Carya illinoinensis HOM05D000104 ORTHO05D005604 4.3e-103 379.8 748 38.5
Gorai.011G185100 Gossypium raimondii HOM05D000104 ORTHO05D005604 7.4e-103 379.0 801 36.8
MD16G1176400 Malus domestica HOM05D000104 ORTHO05D005604 6.2e-102 375.9 780 40.0
FAN22G0992 Fragaria x ananassa HOM05D000104 ORTHO05D005604 5.8e-100 369.4 857 35.5
FAN17G1482 Fragaria x ananassa HOM05D000104 ORTHO05D005604 1.3e-99 368.2 857 35.2
Gorai.006G257000 Gossypium raimondii HOM05D000104 ORTHO05D005604 1.3e-99 368.2 772 39.1
MD13G1174700 Malus domestica HOM05D000104 ORTHO05D005604 3.8e-99 366.7 794 38.7
vmacro04191 Vaccinium macrocarpon HOM05D000104 ORTHO05D005604 1.9e-95 354.4 963 34.0
Glyma.17G022300 Glycine max HOM05D000104 ORTHO05D005604 1.3e-94 351.7 791 37.4
FvH4_4g17030 Fragaria vesca HOM05D000104 ORTHO05D005604 2.4e-93 347.4 857 37.6
FAN07G2961 Fragaria x ananassa HOM05D000104 ORTHO05D005604 5.3e-93 346.3 893 34.4
Ca_21553_v3 Cicer arietinum L. HOM05D000104 ORTHO05D005604 1.2e-92 345.1 776 36.2
Nitab4.5_0006542g0020 Nicotiana tabacum HOM05D000104 ORTHO05D005604 2.0e-92 344.4 790 34.7
Phvul.003G100200 Phaseolus vulgaris HOM05D000104 ORTHO05D005604 5.8e-92 342.8 788 36.8
TWI53G1887 Tripterygium wilfordii HOM05D000104 ORTHO05D005604 4.9e-91 339.7 815 33.6
Glyma.07G252100 Glycine max HOM05D000104 ORTHO05D005604 6.5e-91 339.3 791 36.0
Rhsim13G0223800 Rhododendron simsii HOM05D000104 ORTHO05D005604 4.2e-90 336.7 809 35.6
Cc00_g10730 Coffea canephora HOM05D000104 ORTHO05D005604 1.2e-89 335.1 794 35.3
MELO3C006601.2 Cucumis melo HOM05D000104 ORTHO05D005604 3.5e-89 333.6 812 34.0
Lsat_1_v5_gn_8_137440 Lactuca sativa HOM05D000104 ORTHO05D005604 6.0e-89 332.8 688 37.8
Nn3g21275 Nelumbo nucifera HOM05D000104 ORTHO05D005604 1.0e-88 332.0 723 37.6
Psat4g029520 Pisum sativum HOM05D000104 ORTHO05D005604 1.0e-88 332.0 777 35.0
Migut.D00580 Erythranthe guttata HOM05D000104 ORTHO05D005604 2.3e-88 330.9 738 35.6
CsaV3_3G014070 Cucumis sativus L. HOM05D000104 ORTHO05D005604 1.1e-87 328.6 810 34.4
TPR.G14962 Trifolium pratense HOM05D000104 ORTHO05D005604 6.3e-86 322.8 778 35.1
Sed0001718 Sechium edule HOM05D000104 ORTHO05D005604 3.1e-85 320.5 806 34.1
Medtr4g118720 Medicago truncatula HOM05D000104 ORTHO05D005604 4.5e-84 316.6 788 37.6
PGR042G2589 Punica granatum HOM05D000104 ORTHO05D005604 4.5e-84 316.6 740 35.3
ClCG05G005740 Citrullus lanatus HOM05D000104 ORTHO05D005604 5.9e-84 316.2 550 39.8
HanXRQChr17g0554821 Helianthus annuus HOM05D000104 ORTHO05D005604 1.7e-83 314.7 687 36.7
CAN.G71.7 Capsicum annuum HOM05D000104 ORTHO05D005604 3.2e-82 310.5 768 32.7
Sopen11g023970 Solanum pennellii HOM05D000104 ORTHO05D005604 5.5e-82 309.7 786 32.8
Peaxi162Scf00029g00307 Petunia axillaris HOM05D000104 ORTHO05D005604 1.6e-81 308.1 782 33.5
Solyc11g062010.3 Solanum lycopersicum HOM05D000104 ORTHO05D005604 7.9e-81 305.8 786 32.6
Lalb_Chr12g0196421 Lupinus albus HOM05D000104 ORTHO05D005604 2.8e-78 297.4 788 33.0
Lj6g0025055 Lotus japonicus HOM05D000104 ORTHO05D005604 4.8e-78 296.6 745 37.6
ECA233G1169 Erigeron canadensis HOM05D000104 ORTHO05D005604 2.4e-77 294.3 677 36.3
arahy.Tifrunner.gnm1.ann1.Z03QFY Arachis hypogaea HOM05D000104 ORTHO05D005604 5.3e-77 293.1 797 33.8
Nitab4.5_0000492g0040 Nicotiana tabacum HOM05D000104 ORTHO05D005604 5.3e-77 293.1 955 30.3
SGA_v2.0_scaffold8G04607 Striga asiatica HOM05D000104 ORTHO05D005604 1.2e-76 292.0 758 33.9
Lalb_Chr13g0303901 Lupinus albus HOM05D000104 ORTHO05D005604 1.5e-76 291.6 790 33.0
arahy.Tifrunner.gnm1.ann1.S83KV6 Arachis hypogaea HOM05D000104 ORTHO05D005604 2.2e-75 287.7 801 33.7
arahy.Tifrunner.gnm1.ann1.Q30CKZ Arachis hypogaea HOM05D000104 ORTHO05D005604 2.1e-73 281.2 801 33.7
Lj4g0028061 Lotus japonicus HOM05D000104 ORTHO05D005604 7.9e-73 279.3 768 36.5
Dinv36280 Davidia involucrata HOM05D000104 ORTHO05D005604 1.0e-72 278.9 405 45.4
FAN12G1949 Fragaria x ananassa HOM05D000104 ORTHO05D005604 2.6e-71 274.2 802 34.9
arahy.Tifrunner.gnm1.ann1.N8S0IJ Arachis hypogaea HOM05D000104 ORTHO05D005604 4.4e-71 273.5 801 33.3
Gohir.A09G233050 Gossypium hirsutum HOM05D000104 ORTHO05D005604 3.7e-70 270.4 519 38.3
THA.LOC104802562 Tarenaya hassleriana HOM05D000104 ORTHO05D005604 5.3e-69 266.5 686 35.9
AUR62042660 Chenopodium quinoa HOM05D000104 ORTHO05D005604 4.5e-68 263.5 819 31.9
Dinv36279 Davidia involucrata HOM05D000104 ORTHO05D005604 1.7e-67 261.5 433 42.3
BolC3t14976H Brassica oleracea HOM05D000104 ORTHO05D005604 8.5e-67 259.2 674 33.4
BraA03t11420Z Brassica rapa HOM05D000104 ORTHO05D005604 2.5e-66 257.7 675 33.2
Thhalv10016121m.g Eutrema salsugineum HOM05D000104 ORTHO05D005604 2.5e-66 257.7 681 33.5
Sp4g21400 Schrenkiella parvula HOM05D000104 ORTHO05D005604 2.5e-66 257.7 673 33.7
A03p21840 Brassica napus HOM05D000104 ORTHO05D005604 2.7e-65 254.2 675 33.0
Aa31LG5G20580 Aethionema arabicum HOM05D000104 ORTHO05D005604 7.9e-65 252.7 680 33.8
C03p25910 Brassica napus HOM05D000104 ORTHO05D005604 3.0e-64 250.8 674 32.8
PSO801G0783 Papaver somniferum HOM05D000104 ORTHO05D005604 4.4e-63 246.9 682 33.1
EL10Ac3g06521 Beta vulgaris HOM05D000104 ORTHO05D005604 1.1e-61 242.3 547 36.6
PSO339G1276 Papaver somniferum HOM05D000104 ORTHO05D005604 2.4e-61 241.1 691 33.0
THA.LOC104820235 Tarenaya hassleriana HOM05D000104 ORTHO05D005604 3.1e-61 240.7 685 33.0
AT2G28290 Arabidopsis thaliana HOM05D000104 ORTHO05D005604 5.3e-61 240.0 679 32.5
Aqoxy5G00624 Aquilegia oxysepala HOM05D000104 ORTHO05D005604 2.0e-60 238.0 1006 28.5
CARHR121200 Cardamine hirsuta HOM05D000104 ORTHO05D005604 2.5e-58 231.1 674 32.3
BcaB01g03644 Brassica carinata HOM05D000104 ORTHO05D005604 9.4e-58 229.2 674 31.9
Actinidia06887 Actinidia chinensis HOM05D000738 ORTHO05D000675 4.7e-57 226.9 371 41.8
Ah.04g153970 Amaranthus hybridus HOM05D000104 ORTHO05D005604 1.2e-55 222.2 789 30.9
Zm00001eb280740 Zea mays HOM05D000104 ORTHO05D005604 1.3e-51 208.8 797 30.0
Ciclev10004115m.g Citrus clementina HOM05D000104 ORTHO05D005604 6.5e-51 206.5 485 37.3
CSS0020473 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D005604 1.1e-50 205.7 403 40.0
arahy.Tifrunner.gnm1.ann1.Z04G07 Arachis hypogaea HOM05D000104 ORTHO05D005604 1.2e-49 202.2 711 31.1
TAR365G0890 Trochodendron aralioides HOM05D000104 ORTHO05D005604 6.1e-49 199.9 750 29.6
arahy.Tifrunner.gnm1.ann1.Q10S7I Arachis hypogaea HOM05D000104 ORTHO05D005604 2.2e-43 181.4 677 30.4
MBI19_g34717_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D005604 2.9e-43 181.0 787 28.0
HPP92_007983 Vanilla planifolia HOM05D002012 ORTHO05D001992 2.9e-43 181.0 731 29.7
Ah.13g074440 Amaranthus hybridus HOM05D000404 ORTHO05D005791 8.8e-40 169.5 197 50.8
CDE05G2634 Ceratophyllum demersum HOM05D000104 ORTHO05D005604 1.5e-39 168.7 794 28.1
ATR1101G061 Amborella trichopoda HOM05D000104 ORTHO05D005604 5.7e-39 166.8 689 28.6
AUR62040388 Chenopodium quinoa HOM05D000104 ORTHO05D005604 1.3e-38 165.6 775 27.1
Cpa.g.sc16.100 Carica papaya HOM05D000104 ORTHO05D005604 7.0e-37 159.8 342 35.7
TAR365G0129 Trochodendron aralioides HOM05D000104 ORTHO05D005604 3.5e-36 157.5 367 36.0
Cfa015504 Carpinus fangiana HOM05D000104 ORTHO05D005604 4.5e-36 157.1 107 77.6
TPR.G14955 Trifolium pratense HOM05D029028 ORTHO05D030699 1.5e-34 152.1 323 35.3
unitig_32.g11765 Utricularia gibba HOM05D000186 ORTHO05D002329 7.3e-34 149.8 682 26.7
Os06g0255200 Oryza sativa ssp. japonica HOM05D000104 ORTHO05D005604 2.1e-33 148.3 467 31.9
Cpa.g.sc16.94 Carica papaya HOM05D000104 ORTHO05D005604 1.0e-32 146.0 419 31.0
Cc00_g33690 Coffea canephora HOM05D000104 ORTHO05D005604 1.4e-32 145.6 96 80.2
AL4G21810 Arabidopsis lyrata HOM05D000104 ORTHO05D005604 6.8e-32 143.3 626 28.4
Cpa.g.sc16.103 Carica papaya HOM05D000104 ORTHO05D005604 9.8e-31 139.4 149 51.0
Nitab4.5_0004806g0040 Nicotiana tabacum HOM05D000455 ORTHO05D000434 9.8e-31 139.4 145 56.6
Oeu050209.1 Olea europaea HOM05D000104 ORTHO05D005604 2.2e-30 138.3 372 30.9
Nitab4.5_0002766g0090 Nicotiana tabacum HOM05D000455 ORTHO05D010375 1.8e-29 135.2 95 72.6
BcaB02g10070 Brassica carinata HOM05D000484 ORTHO05D005604 8.3e-22 109.8 68 80.9
arahy.Tifrunner.gnm1.ann1.0XZV5D Arachis hypogaea HOM05D000846 ORTHO05D001340 1.3e-19 102.4 163 45.4
Actinidia06888 Actinidia chinensis HOM05D000104 ORTHO05D005604 6.2e-17 93.6 134 44.8
arahy.Tifrunner.gnm1.ann1.E69ZFU Arachis hypogaea HOM05D000104 ORTHO05D005604 1.4e-16 92.4 57 82.5
Hma1.2p1_3230F.1_g334250 Hydrangea macrophylla HOM05D000104 ORTHO05D005604 1.8e-16 92.0 216 39.8
SHI37476 Sapria himalayana HOM05D005377 ORTHO05D005604 1.8e-16 92.0 173 35.8
FAN12G0301 Fragaria x ananassa HOM05D000104 ORTHO05D005604 6.8e-16 90.1 55 83.6
Mapoly0171s0025 Marchantia polymorpha HOM05D000104 ORTHO05D005604 6.8e-16 90.1 88 54.5
CSS0040868 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D005604 3.4e-15 87.8 185 37.8
AagrBONN_evm.TU.Sc2ySwM_368.1449 Anthoceros agrestis HOM05D000104 ORTHO05D005604 4.9e-14 84.0 514 23.9
Eucgr.E01764 Eucalyptus grandis HOM05D000104 ORTHO05D005604 1.0e-11 76.3 226 28.8
Pp3c14_90 Physcomitrium patens HOM05D000104 ORTHO05D005604 1.3e-11 75.9 94 44.7
SHI00293 Sapria himalayana HOM05D000691 ORTHO05D000378 6.6e-11 73.6 48 75.0
TPR.G14627 Trifolium pratense HOM05D000319 ORTHO05D000903 6.2e-09 67.0 153 29.4
Hma1.2p1_0728F.1_g209240 Hydrangea macrophylla HOM05D000104 ORTHO05D005604 1.8e-08 65.5 45 68.9


User provided reference genes

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