Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A14G70 Lonicera japonica HOM05D004146 ORTHO05D004843 1.1e-162 576.6 292 100.0
CSS0021664 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 1.2e-129 466.8 344 71.8
CSS0038119 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 4.5e-129 464.9 344 71.5
Lj1C336G0 Lonicera japonica HOM05D004146 ORTHO05D004843 1.3e-128 463.4 343 75.8
CSS0047407 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 9.3e-127 457.2 344 70.1
Dinv12116 Davidia involucrata HOM05D004146 ORTHO05D004843 1.8e-125 453.0 344 69.8
GSVIVG01028167001 Vitis vinifera HOM05D004146 ORTHO05D004843 5.1e-125 451.4 344 69.2
Dinv39081 Davidia involucrata HOM05D004146 ORTHO05D004843 2.5e-124 449.1 344 70.1
Rhsim13G0002300 Rhododendron simsii HOM05D004146 ORTHO05D004843 3.3e-124 448.7 344 68.3
Cpa.g.sc18.100 Carica papaya HOM05D004146 ORTHO05D004843 7.4e-124 447.6 345 69.6
COL.COLO4_23187 Corchorus olitorius HOM05D004146 ORTHO05D004843 7.4e-124 447.6 344 69.2
Manes.05G012300 Manihot esculenta HOM05D004146 ORTHO05D004843 1.6e-123 446.4 344 68.3
Actinidia17925 Actinidia chinensis HOM05D004146 ORTHO05D004843 2.2e-123 446.0 344 68.9
Ciclev10020117m.g Citrus clementina HOM05D004146 ORTHO05D004843 4.8e-123 444.9 345 68.4
Thecc.01G319000 Theobroma cacao HOM05D004146 ORTHO05D004843 4.8e-123 444.9 344 69.2
Gohir.D08G141300 Gossypium hirsutum HOM05D004146 ORTHO05D004843 6.3e-123 444.5 344 68.6
Gorai.004G145300 Gossypium raimondii HOM05D004146 ORTHO05D004843 6.3e-123 444.5 344 68.6
Gohir.A08G120400 Gossypium hirsutum HOM05D004146 ORTHO05D004843 8.2e-123 444.1 344 68.6
Nn2g12083 Nelumbo nucifera HOM05D004146 ORTHO05D004843 1.4e-122 443.4 343 68.8
Potri.014G117400 Populus trichocarpa HOM05D004146 ORTHO05D004843 2.4e-122 442.6 345 68.1
CiPaw.08G086700 Carya illinoinensis HOM05D004146 ORTHO05D004843 4.5e-121 438.3 344 67.4
Sabra14G0087100 Salix brachista HOM05D004146 ORTHO05D004843 5.9e-121 438.0 345 67.0
CAN.G293.4 Capsicum annuum HOM05D004146 ORTHO05D004843 3.8e-120 435.3 341 68.3
Eucgr.K03560 Eucalyptus grandis HOM05D004146 ORTHO05D004843 8.5e-120 434.1 342 67.8
PGSC0003DMG400009054 Solanum tuberosum HOM05D004146 ORTHO05D004843 8.5e-120 434.1 340 67.6
Sopen01g030990 Solanum pennellii HOM05D004146 ORTHO05D004843 1.9e-119 433.0 340 67.6
Atru.chr5.940 Acer truncatum HOM05D004146 ORTHO05D004843 2.5e-119 432.6 345 67.0
HanXRQChr06g0168071 Helianthus annuus HOM05D004146 ORTHO05D004843 2.5e-119 432.6 343 67.9
MSTRG.21711 Avicennia marina HOM05D004146 ORTHO05D004843 7.2e-119 431.0 341 68.6
Cc01_g21680 Coffea canephora HOM05D004146 ORTHO05D004843 2.1e-118 429.5 353 66.3
Prupe.3G006800 Prunus persica HOM05D004146 ORTHO05D004843 4.6e-118 428.3 359 63.5
vmacro02380 Vaccinium macrocarpon HOM05D004146 ORTHO05D004843 6.1e-118 427.9 350 66.9
Nitab4.5_0000222g0120 Nicotiana tabacum HOM05D004146 ORTHO05D004843 1.4e-117 426.8 341 66.6
PGR083G0515 Punica granatum HOM05D004146 ORTHO05D004843 1.4e-117 426.8 340 65.6
Peaxi162Scf00770g00128 Petunia axillaris HOM05D004146 ORTHO05D004843 2.3e-117 426.0 344 66.0
CANSAT80G2876 Cannabis sativa HOM05D004146 ORTHO05D004843 5.1e-117 424.9 346 64.5
Solyc01g079210.3 Solanum lycopersicum HOM05D004146 ORTHO05D004843 5.1e-117 424.9 340 66.8
TAR633G1592 Trochodendron aralioides HOM05D004146 ORTHO05D004843 5.1e-117 424.9 344 65.7
FAN23G2063 Fragaria x ananassa HOM05D004146 ORTHO05D004843 1.5e-116 423.3 332 67.8
FvH4_1g26770 Fragaria vesca HOM05D004146 ORTHO05D004843 2.0e-116 422.9 332 68.1
QL12p018794 Quercus lobata HOM05D004146 ORTHO05D004843 2.6e-116 422.5 344 66.0
RcHm_v2.0_Chr3g0486991 Rosa chinensis HOM05D004146 ORTHO05D004843 2.6e-116 422.5 334 67.4
SGA_v2.0_scaffold376G50305 Striga asiatica HOM05D004146 ORTHO05D004843 2.6e-116 422.5 340 66.5
TWI14G0575 Tripterygium wilfordii HOM05D004146 ORTHO05D004843 7.4e-116 421.0 345 65.8
Sc24g0004180 Simmondsia chinensis HOM05D004146 ORTHO05D004843 3.7e-115 418.7 344 64.2
Migut.D00054 Erythranthe guttata HOM05D004146 ORTHO05D004843 4.8e-115 418.3 341 66.9
AUR62024599 Chenopodium quinoa HOM05D004146 ORTHO05D004843 6.3e-115 417.9 332 64.8
ECA236G0429 Erigeron canadensis HOM05D004146 ORTHO05D004843 1.1e-114 417.2 344 65.7
arahy.Tifrunner.gnm1.ann1.TWIF5Z Arachis hypogaea HOM05D004146 ORTHO05D004843 2.4e-114 416.0 335 66.6
EL10As5g23605 Beta vulgaris HOM05D004146 ORTHO05D004843 4.1e-114 415.2 333 66.1
TWI23G0480 Tripterygium wilfordii HOM05D004146 ORTHO05D004843 4.1e-114 415.2 345 64.6
Thhalv10001452m.g Eutrema salsugineum HOM05D004146 ORTHO05D004843 5.3e-114 414.8 338 63.0
arahy.Tifrunner.gnm1.ann1.F4ZKGQ Arachis hypogaea HOM05D004146 ORTHO05D004843 9.1e-114 414.1 335 66.3
Lsat_1_v5_gn_0_33621 Lactuca sativa HOM05D004146 ORTHO05D004843 9.1e-114 414.1 332 67.8
Glyma.19G218500 Glycine max HOM05D004146 ORTHO05D004843 1.2e-113 413.7 334 67.1
Phvul.001G214900 Phaseolus vulgaris HOM05D004146 ORTHO05D004843 1.2e-113 413.7 339 66.1
VMungo1383G2606 Vigna mungo HOM05D004146 ORTHO05D004843 2.0e-113 412.9 339 65.8
FAN19G1384 Fragaria x ananassa HOM05D004146 ORTHO05D004843 2.6e-113 412.5 342 65.8
FAN28G1198 Fragaria x ananassa HOM05D004146 ORTHO05D004843 2.6e-113 412.5 345 65.8
Sp4g29200 Schrenkiella parvula HOM05D004146 ORTHO05D004843 5.0e-112 408.3 342 61.1
HPP92_024389 Vanilla planifolia HOM05D004146 ORTHO05D004843 5.0e-112 408.3 341 63.3
Psat3g019080 Pisum sativum HOM05D004146 ORTHO05D004843 6.5e-112 407.9 339 63.4
THA.LOC104802140 Tarenaya hassleriana HOM05D004146 ORTHO05D004843 6.5e-112 407.9 358 60.6
C04p00700 Brassica napus HOM05D004146 ORTHO05D004843 8.5e-112 407.5 332 63.0
BolC4t21705H Brassica oleracea HOM05D004146 ORTHO05D004843 8.5e-112 407.5 332 63.0
CARHR142600 Cardamine hirsuta HOM05D004146 ORTHO05D004843 8.5e-112 407.5 343 60.9
A05p00620 Brassica napus HOM05D004146 ORTHO05D004843 1.1e-111 407.1 332 63.0
MD01G1004200 Malus domestica HOM05D004146 ORTHO05D004843 1.1e-111 407.1 340 64.4
PSO210G5259 Papaver somniferum HOM05D004146 ORTHO05D004843 1.4e-111 406.8 343 62.4
BcaC02g12586 Brassica carinata HOM05D004146 ORTHO05D004843 1.9e-111 406.4 332 62.7
Carub.0004s2994 Capsella rubella HOM05D004146 ORTHO05D004843 1.9e-111 406.4 343 60.3
BraA05t19061Z Brassica rapa HOM05D004146 ORTHO05D004843 4.2e-111 405.2 332 62.7
BcaB06g29458 Brassica carinata HOM05D004146 ORTHO05D004843 9.4e-111 404.1 342 60.8
Glyma.03G221500 Glycine max HOM05D004146 ORTHO05D004843 1.2e-110 403.7 341 64.2
Lalb_Chr04g0260041 Lupinus albus HOM05D004146 ORTHO05D004843 1.2e-110 403.7 334 65.3
Lalb_Chr18g0046551 Lupinus albus HOM05D004146 ORTHO05D004843 1.6e-110 403.3 334 64.7
BcaB02g08794 Brassica carinata HOM05D004146 ORTHO05D004843 2.1e-110 402.9 332 61.7
Ca_09227_v3 Cicer arietinum L. HOM05D004146 ORTHO05D004843 4.7e-110 401.7 346 62.1
PSO761G0652 Papaver somniferum HOM05D004146 ORTHO05D004843 4.7e-110 401.7 343 61.8
unitig_736.g22928 Utricularia gibba HOM05D004146 ORTHO05D004843 4.7e-110 401.7 347 61.7
Aa31LG1G28520 Aethionema arabicum HOM05D004146 ORTHO05D004843 6.1e-110 401.4 343 60.1
Aqoxy2G00845 Aquilegia oxysepala HOM05D004146 ORTHO05D004843 7.9e-110 401.0 344 64.0
AL4G46770 Arabidopsis lyrata HOM05D004146 ORTHO05D004843 1.4e-109 400.2 343 60.6
CDE10G1142 Ceratophyllum demersum HOM05D004146 ORTHO05D004843 1.4e-109 400.2 344 61.3
MELO3C015904.2 Cucumis melo HOM05D004146 ORTHO05D004843 3.0e-109 399.1 344 63.7
arahy.Tifrunner.gnm1.ann1.BI9FA3 Arachis hypogaea HOM05D004146 ORTHO05D004843 3.9e-109 398.7 343 61.5
arahy.Tifrunner.gnm1.ann1.E9GQEB Arachis hypogaea HOM05D004146 ORTHO05D004843 3.9e-109 398.7 343 61.5
ClCG09G004890 Citrullus lanatus HOM05D004146 ORTHO05D004843 3.9e-109 398.7 344 63.4
ATR0564G334 Amborella trichopoda HOM05D004146 ORTHO05D004843 5.2e-109 398.3 332 61.4
MD15G1342700 Malus domestica HOM05D004146 ORTHO05D004843 5.2e-109 398.3 342 62.3
Zm00001eb235700 Zea mays HOM05D004146 ORTHO05D004843 5.2e-109 398.3 335 63.9
AT2G47210 Arabidopsis thaliana HOM05D004146 ORTHO05D004843 6.7e-109 397.9 343 60.3
CsaV3_7G030200 Cucumis sativus L. HOM05D004146 ORTHO05D004843 8.8e-109 397.5 344 63.4
TPR.G38442 Trifolium pratense HOM05D004146 ORTHO05D004843 1.1e-108 397.1 334 62.6
TPR.G4037 Trifolium pratense HOM05D004146 ORTHO05D004843 1.5e-108 396.7 340 62.1
Hma1.2p1_0965F.1_g242130 Hydrangea macrophylla HOM05D004146 ORTHO05D004843 2.0e-108 396.4 347 63.4
Sed0005540 Sechium edule HOM05D004146 ORTHO05D004843 2.6e-108 396.0 344 62.2
BraSC79t46677Z Brassica rapa HOM05D004146 ORTHO05D004843 4.4e-108 395.2 339 59.6
Lj1g0001654 Lotus japonicus HOM05D004146 ORTHO05D004843 4.4e-108 395.2 333 62.8
TAR362G0580 Trochodendron aralioides HOM05D004146 ORTHO05D004843 5.7e-108 394.8 328 65.2
Medtr7g109870 Medicago truncatula HOM05D004146 ORTHO05D004843 3.7e-107 392.1 343 61.2
Aqoxy4G02480 Aquilegia oxysepala HOM05D004146 ORTHO05D004843 4.8e-107 391.7 344 63.4
Os05g0540800 Oryza sativa ssp. japonica HOM05D004146 ORTHO05D004843 1.8e-106 389.8 333 62.8
Oeu044739.1 Olea europaea HOM05D004146 ORTHO05D004843 2.4e-106 389.4 247 78.9
C04p72630 Brassica napus HOM05D004146 ORTHO05D004843 3.1e-106 389.0 343 59.5
CiPaw.07G120600 Carya illinoinensis HOM05D004146 ORTHO05D004843 4.1e-106 388.7 318 66.7
BcaC02g06965 Brassica carinata HOM05D004146 ORTHO05D004843 7.0e-106 387.9 343 59.2
Actinidia21373 Actinidia chinensis HOM05D004146 ORTHO05D004843 1.3e-104 383.6 324 64.2
Carub.0004s2995 Capsella rubella HOM05D004146 ORTHO05D004843 1.3e-104 383.6 329 60.5
DCAR_018267 Daucus carota HOM05D004146 ORTHO05D004843 2.9e-104 382.5 300 69.0
A04p34860 Brassica napus HOM05D004146 ORTHO05D004843 8.5e-104 380.9 365 55.3
Lj5g0012537 Lotus japonicus HOM05D004146 ORTHO05D004843 8.5e-104 380.9 342 61.1
Duzib211G0108 Durio zibethinus HOM05D004146 ORTHO05D004843 1.2e-102 377.1 310 64.5
Lalb_Chr06g0167021 Lupinus albus HOM05D004146 ORTHO05D004843 8.2e-99 364.4 340 60.3
Nitab4.5_0010752g0020 Nicotiana tabacum HOM05D004146 ORTHO05D004843 9.4e-95 350.9 298 63.4
SHI33153 Sapria himalayana HOM05D004146 ORTHO05D004843 2.1e-94 349.7 252 68.3
MBI19_g36749_MAGBIO Magnolia biondii HOM05D004146 ORTHO05D004843 3.6e-94 349.0 336 59.2
SEGI_29063 Sequoiadendron giganteum HOM05D004146 ORTHO05D004843 3.7e-91 339.0 345 52.8
Hund09662 Selenicereus undatus HOM05D004146 ORTHO05D004843 1.4e-90 337.0 335 57.9
Medtr1g086590 Medicago truncatula HOM05D004146 ORTHO05D004843 1.2e-89 334.0 342 55.6
AUR62011755 Chenopodium quinoa HOM05D004146 ORTHO05D004843 1.5e-87 327.0 332 55.1
Ca_10265_v3 Cicer arietinum L. HOM05D004146 ORTHO05D004843 4.1e-82 308.9 419 46.5
Mapoly0165s0024 Marchantia polymorpha HOM05D004146 ORTHO05D004843 5.4e-82 308.5 355 47.3
Haze_05083 Corylus avellana HOM05D004146 ORTHO05D004843 3.5e-81 305.8 366 50.5
BolC4t25516H Brassica oleracea HOM05D004146 ORTHO05D004843 5.9e-81 305.1 343 50.7
SMO244G0096 Selaginella moellendorffii HOM05D004146 ORTHO05D004843 5.0e-80 302.0 320 52.5
AagrBONN_evm.TU.Sc2ySwM_228.1245 Anthoceros agrestis HOM05D004146 ORTHO05D004843 6.6e-80 301.6 248 59.3
Pp3c1_35180 Physcomitrium patens HOM05D004146 ORTHO05D004843 8.9e-77 291.2 246 58.5
TPR.G31750 Trifolium pratense HOM05D004146 ORTHO05D004843 9.8e-76 287.7 337 51.3
Psat6g160560 Pisum sativum HOM05D004146 ORTHO05D004843 1.7e-75 287.0 226 64.2
CBR_g3593 Chara braunii HOM05D004146 ORTHO05D004843 1.7e-72 276.9 248 58.5
BcaC02g09008 Brassica carinata HOM05D004146 ORTHO05D004843 5.0e-72 275.4 336 47.3
Duzib211G0650 Durio zibethinus HOM05D004146 ORTHO05D004843 7.3e-71 271.6 323 52.0
Duzib138G1200 Durio zibethinus HOM05D004146 ORTHO05D004843 1.7e-64 250.4 344 46.2
Mapoly0092s0082 Marchantia polymorpha HOM05D004146 ORTHO05D004843 3.0e-64 249.6 315 46.0
BolC4t25515H Brassica oleracea HOM05D004146 ORTHO05D004843 1.2e-60 237.7 179 66.5
Dinv33143 Davidia involucrata HOM05D004146 ORTHO05D004843 2.0e-60 236.9 341 44.3
C04p39500 Brassica napus HOM05D004146 ORTHO05D004843 1.2e-57 227.6 183 62.3
Psat6g160640 Pisum sativum HOM05D004146 ORTHO05D004843 2.7e-57 226.5 164 68.3
Pp3c2_4040 Physcomitrium patens HOM05D004146 ORTHO05D004843 7.8e-57 224.9 246 49.2
C04p39490 Brassica napus HOM05D004146 ORTHO05D004843 2.3e-56 223.4 184 62.0
SalBow3G0988 Salvia bowleyana HOM05D004146 ORTHO05D004843 2.3e-56 223.4 133 81.2
BcaC02g09009 Brassica carinata HOM05D004146 ORTHO05D004843 3.1e-53 213.0 177 61.0
PRCOL_00004506 Prasinoderma coloniale HOM05D004146 ORTHO05D004843 5.6e-47 192.2 324 38.0
Actinidia20972 Actinidia chinensis HOM05D004146 ORTHO05D004843 3.4e-44 183.0 213 52.6
Cre03.g144907 Chlamydomonas reinhardtii HOM05D004146 ORTHO05D004843 6.4e-43 178.7 260 40.8
AagrBONN_evm.TU.Sc2ySwM_228.1331 Anthoceros agrestis HOM05D004146 ORTHO05D004843 1.1e-39 167.9 217 43.3
Lj1g0004326 Lotus japonicus HOM05D004146 ORTHO05D004843 4.5e-36 156.0 188 51.1
Oeu062253.1 Olea europaea HOM05D004146 ORTHO05D004843 3.9e-32 142.9 144 54.9
Psat6g160680 Pisum sativum HOM05D004146 ORTHO05D004843 3.7e-30 136.3 123 52.8
BcaC02g12616 Brassica carinata HOM05D004146 ORTHO05D004843 1.1e-26 124.8 177 44.6
TPR.G18531 Trifolium pratense HOM05D004146 ORTHO05D004843 2.5e-23 113.6 96 57.3
MCO05G453 Micromonas commoda HOM05D004146 ORTHO05D004843 2.8e-22 110.2 128 46.1
CAN.G111.15 Capsicum annuum HOM05D004146 ORTHO05D004843 1.2e-17 94.7 57 68.4
Cfa022451 Carpinus fangiana HOM05D004146 ORTHO05D004843 1.2e-17 94.7 305 27.5
BolC4t28750H Brassica oleracea HOM05D004146 ORTHO05D004843 1.6e-17 94.4 205 35.6
RcHm_v2.0_Chr2g0114941 Rosa chinensis HOM05D004146 ORTHO05D004843 7.9e-17 92.0 98 51.0
HPP92_024388 Vanilla planifolia HOM05D002498 ORTHO05D008129 4.3e-15 86.3 54 75.9
Sabra02G0047100 Salix brachista HOM05D004503 ORTHO05D005460 8.2e-14 82.0 111 48.6
BolC4t28751H Brassica oleracea HOM05D004146 ORTHO05D004843 4.1e-13 79.7 139 39.6
VMungo1383G1227 Vigna mungo HOM05D004146 ORTHO05D000001 1.6e-09 67.8 41 80.5
Lsat_1_v5_gn_4_71221 Lactuca sativa HOM05D002292 ORTHO05D003256 2.1e-09 67.4 40 87.5
RcHm_v2.0_Chr6g0284911 Rosa chinensis HOM05D004215 ORTHO05D005293 7.9e-09 65.5 96 39.6
Lsat_1_v5_gn_2_7680 Lactuca sativa HOM05D004146 ORTHO05D004843 4.3e-07 59.7 47 72.3
Lsat_1_v5_gn_8_147141 Lactuca sativa HOM05D004146 ORTHO05D004843 5.7e-07 59.3 38 81.6
Lsat_1_v5_gn_3_136441 Lactuca sativa HOM05D004146 ORTHO05D004843 2.8e-06 57.0 112 42.0


User provided reference genes

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