Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr25g0279491 Lupinus albus HOM05D004152 ORTHO05D004878 2.7e-130 468.8 250 100.0
Lj3g0007947 Lotus japonicus HOM05D004152 ORTHO05D004878 5.4e-99 364.8 223 83.4
Medtr4g011180 Medicago truncatula HOM05D004152 ORTHO05D004878 5.6e-96 354.8 255 73.3
Ca_20428_v3 Cicer arietinum L. HOM05D004152 ORTHO05D004878 8.1e-95 350.9 223 79.8
VMungo0331G1163 Vigna mungo HOM05D004152 ORTHO05D004878 8.1e-95 350.9 221 79.2
arahy.Tifrunner.gnm1.ann1.HAI1EF Arachis hypogaea HOM05D004152 ORTHO05D004878 2.3e-94 349.4 257 69.6
Glyma.07G032200 Glycine max HOM05D004152 ORTHO05D004878 2.3e-94 349.4 222 79.3
Psat7g255640 Pisum sativum HOM05D004152 ORTHO05D004878 2.0e-93 346.3 223 78.5
Glyma.08G210500 Glycine max HOM05D004152 ORTHO05D004878 2.2e-92 342.8 221 78.3
Phvul.010G153800 Phaseolus vulgaris HOM05D004152 ORTHO05D004878 2.2e-92 342.8 221 77.4
Gorai.012G137200 Gossypium raimondii HOM05D004152 ORTHO05D004878 2.1e-90 336.3 255 68.6
Gohir.A04G110300 Gossypium hirsutum HOM05D004152 ORTHO05D004878 7.8e-90 334.3 257 68.5
Gohir.D04G150500 Gossypium hirsutum HOM05D004152 ORTHO05D004878 7.8e-90 334.3 255 68.2
Gohir.D04G150600 Gossypium hirsutum HOM05D004152 ORTHO05D004878 7.8e-90 334.3 255 68.2
COL.COLO4_08312 Corchorus olitorius HOM05D004152 ORTHO05D004878 2.3e-89 332.8 210 78.1
Duzib052G0353 Durio zibethinus HOM05D004152 ORTHO05D004878 8.6e-89 330.9 222 73.0
CANSAT21G2552 Cannabis sativa HOM05D004152 ORTHO05D004878 1.1e-88 330.5 218 75.2
Haze_18794 Corylus avellana HOM05D004152 ORTHO05D004878 1.5e-88 330.1 221 74.7
arahy.Tifrunner.gnm1.ann1.Y2K32V Arachis hypogaea HOM05D004152 ORTHO05D004878 1.9e-88 329.7 259 66.8
ClCG01G004210 Citrullus lanatus HOM05D004152 ORTHO05D004878 1.9e-88 329.7 225 74.2
Thecc.02G150400 Theobroma cacao HOM05D004152 ORTHO05D004878 1.9e-88 329.7 198 80.3
Gorai.005G214700 Gossypium raimondii HOM05D004152 ORTHO05D004878 3.3e-88 328.9 225 73.3
SalBow6G1227 Salvia bowleyana HOM05D004152 ORTHO05D004878 1.6e-87 326.6 187 84.0
Manes.01G082700 Manihot esculenta HOM05D004152 ORTHO05D004878 2.1e-87 326.2 200 78.0
Cpa.g.sc29.188 Carica papaya HOM05D004152 ORTHO05D004878 2.8e-87 325.9 229 72.1
Lj2C222T2 Lonicera japonica HOM05D004152 ORTHO05D004878 3.6e-87 325.5 226 72.1
MD04G1062100 Malus domestica HOM05D004152 ORTHO05D004878 3.6e-87 325.5 223 73.5
MELO3C005518.2 Cucumis melo HOM05D004152 ORTHO05D004878 4.7e-87 325.1 222 75.2
Gohir.D02G191900 Gossypium hirsutum HOM05D004152 ORTHO05D004878 6.2e-87 324.7 208 76.9
CiPaw.16G091100 Carya illinoinensis HOM05D004152 ORTHO05D004878 8.1e-87 324.3 255 66.3
Prupe.5G066300 Prunus persica HOM05D004152 ORTHO05D004878 8.1e-87 324.3 249 67.1
Aqoxy7G00850 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 1.1e-86 323.9 256 66.4
FAN18G1702 Fragaria x ananassa HOM05D004152 ORTHO05D004878 1.8e-86 323.2 250 67.2
HanXRQChr13g0417841 Helianthus annuus HOM05D004152 ORTHO05D004878 2.4e-86 322.8 209 76.1
Sabra03G0074600 Salix brachista HOM05D004152 ORTHO05D004878 2.4e-86 322.8 199 77.9
TWI81G0703 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 2.4e-86 322.8 243 68.3
Aqoxy7G00694 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 3.1e-86 322.4 220 72.3
FAN08G2273 Fragaria x ananassa HOM05D004152 ORTHO05D004878 3.1e-86 322.4 253 66.4
MSTRG.12117 Avicennia marina HOM05D004152 ORTHO05D004878 5.2e-86 321.6 218 73.9
QL12p011587 Quercus lobata HOM05D004152 ORTHO05D004878 5.2e-86 321.6 245 66.1
Sc10g0005540 Simmondsia chinensis HOM05D004152 ORTHO05D004878 5.2e-86 321.6 221 73.3
Potri.003G107800 Populus trichocarpa HOM05D004152 ORTHO05D004878 6.9e-86 321.2 198 77.3
Cfa019694 Carpinus fangiana HOM05D004152 ORTHO05D004878 8.9e-86 320.9 234 70.9
MD06G1055800 Malus domestica HOM05D004152 ORTHO05D004878 8.9e-86 320.9 249 65.5
FAN13G0727 Fragaria x ananassa HOM05D004152 ORTHO05D004878 1.2e-85 320.5 250 65.2
SGA_v2.0_scaffold104G30172 Striga asiatica HOM05D004152 ORTHO05D004878 1.2e-85 320.5 219 73.5
CSS0047405 Camellia sinensis var. sinensis HOM05D004152 ORTHO05D004878 1.5e-85 320.1 180 83.3
Nitab4.5_0002881g0050 Nicotiana tabacum HOM05D004152 ORTHO05D004878 2.0e-85 319.7 207 75.4
Atru.chr9.1286 Acer truncatum HOM05D004152 ORTHO05D004878 2.6e-85 319.3 219 70.3
CsaV3_5G004400 Cucumis sativus L. HOM05D004152 ORTHO05D004878 2.6e-85 319.3 209 76.6
Ciclev10021871m.g Citrus clementina HOM05D004152 ORTHO05D004878 4.4e-85 318.5 221 71.0
Nitab4.5_0000618g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 4.4e-85 318.5 193 79.8
TWI60G0584 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 4.4e-85 318.5 195 78.5
FvH4_5g19250 Fragaria vesca HOM05D004152 ORTHO05D004878 5.8e-85 318.2 204 76.0
THA.LOC104824129 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 5.8e-85 318.2 220 72.3
FAN04G2897 Fragaria x ananassa HOM05D004152 ORTHO05D004878 7.6e-85 317.8 255 66.7
Nn6g33894 Nelumbo nucifera HOM05D004152 ORTHO05D004878 9.9e-85 317.4 199 74.9
TAR629G1833 Trochodendron aralioides HOM05D004152 ORTHO05D004878 1.7e-84 316.6 187 80.7
unitig_899.g15440 Utricularia gibba HOM05D004152 ORTHO05D004878 1.7e-84 316.6 221 71.5
PGR031G2826 Punica granatum HOM05D004152 ORTHO05D004878 2.2e-84 316.2 187 78.6
Sed0004379 Sechium edule HOM05D004152 ORTHO05D004878 2.9e-84 315.8 181 82.3
Oeu040710.1 Olea europaea HOM05D004152 ORTHO05D004878 8.4e-84 314.3 186 81.7
Solyc06g060790.1 Solanum lycopersicum HOM05D004152 ORTHO05D004878 1.4e-83 313.5 214 69.6
Migut.A01125 Erythranthe guttata HOM05D004152 ORTHO05D004878 1.9e-83 313.2 181 83.4
Sopen06g020930 Solanum pennellii HOM05D004152 ORTHO05D004878 1.9e-83 313.2 210 72.9
PGSC0003DMG400024154 Solanum tuberosum HOM05D004152 ORTHO05D004878 1.9e-83 313.2 214 70.1
EL10Ac5g12362 Beta vulgaris HOM05D004152 ORTHO05D004878 2.4e-83 312.8 220 71.8
Rhsim07G0110300 Rhododendron simsii HOM05D004152 ORTHO05D004878 3.2e-83 312.4 214 74.8
BraA03t11610Z Brassica rapa HOM05D004152 ORTHO05D004878 2.1e-82 309.7 215 69.8
C03p28570 Brassica napus HOM05D004152 ORTHO05D004878 2.7e-82 309.3 217 70.5
HanXRQChr03g0088791 Helianthus annuus HOM05D004152 ORTHO05D004878 2.7e-82 309.3 211 74.4
A03p23950 Brassica napus HOM05D004152 ORTHO05D004878 3.5e-82 308.9 221 69.7
BolC4t22054H Brassica oleracea HOM05D004152 ORTHO05D004878 3.5e-82 308.9 238 66.4
Carub.0004s2557 Capsella rubella HOM05D004152 ORTHO05D004878 3.5e-82 308.9 185 77.8
BcaC02g12415 Brassica carinata HOM05D004152 ORTHO05D004878 4.6e-82 308.5 212 70.8
Thhalv10017142m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 4.6e-82 308.5 185 77.3
CARHR138160 Cardamine hirsuta HOM05D004152 ORTHO05D004878 7.8e-82 307.8 185 77.3
BolC3t15222H Brassica oleracea HOM05D004152 ORTHO05D004878 1.3e-81 307.0 221 68.8
AL4G41740 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 2.3e-81 306.2 225 68.4
AUR62007107 Chenopodium quinoa HOM05D004152 ORTHO05D004878 3.0e-81 305.8 218 70.6
BcaNung03538 Brassica carinata HOM05D004152 ORTHO05D004878 3.9e-81 305.4 222 67.1
DCAR_002274 Daucus carota HOM05D004152 ORTHO05D004878 3.9e-81 305.4 225 68.9
PSO210G4930 Papaver somniferum HOM05D004152 ORTHO05D004878 3.9e-81 305.4 214 71.0
AT2G43090 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 5.1e-81 305.1 225 68.4
BraA05t19344Z Brassica rapa HOM05D004152 ORTHO05D004878 5.1e-81 305.1 226 67.3
PSO210G0624 Papaver somniferum HOM05D004152 ORTHO05D004878 5.1e-81 305.1 221 69.2
Sp4g25220 Schrenkiella parvula HOM05D004152 ORTHO05D004878 8.7e-81 304.3 185 76.2
AUR62019969 Chenopodium quinoa HOM05D004152 ORTHO05D004878 1.1e-80 303.9 221 69.7
DCAR_008502 Daucus carota HOM05D004152 ORTHO05D004878 1.9e-80 303.1 213 70.9
ECA240G2077 Erigeron canadensis HOM05D004152 ORTHO05D004878 4.3e-80 302.0 216 70.8
CAN.G62.23 Capsicum annuum HOM05D004152 ORTHO05D004878 2.1e-79 299.7 180 78.3
Actinidia10839 Actinidia chinensis HOM05D004152 ORTHO05D004878 1.4e-78 297.0 169 84.6
Nitab4.5_0002881g0130 Nicotiana tabacum HOM05D004152 ORTHO05D004878 2.4e-78 296.2 221 67.0
Ah.12g054170 Amaranthus hybridus HOM05D004152 ORTHO05D004878 3.1e-78 295.8 255 63.5
THA.LOC104803472 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 4.0e-78 295.4 220 67.7
CARHR169410 Cardamine hirsuta HOM05D004152 ORTHO05D004878 1.2e-77 293.9 194 72.7
CDE11G0751 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 7.6e-77 291.2 167 82.6
SEGI_19785 Sequoiadendron giganteum HOM05D004152 ORTHO05D004878 2.2e-76 289.7 209 68.4
BcaB01g01073 Brassica carinata HOM05D004152 ORTHO05D004878 2.9e-76 289.3 185 73.5
Peaxi162Scf01022g00023 Petunia axillaris HOM05D004152 ORTHO05D004878 1.1e-75 287.3 242 62.8
Hund14573 Selenicereus undatus HOM05D004152 ORTHO05D004878 3.2e-75 285.8 177 78.0
CARHR169370 Cardamine hirsuta HOM05D004152 ORTHO05D004878 4.2e-75 285.4 229 64.6
Aa31LG10G13480 Aethionema arabicum HOM05D004152 ORTHO05D004878 1.6e-74 283.5 224 66.5
Lj8A264G55 Lonicera japonica HOM05D004152 ORTHO05D004878 1.6e-74 283.5 170 80.6
Aa31LG1G24900 Aethionema arabicum HOM05D004152 ORTHO05D004878 4.6e-74 282.0 183 73.2
ATR0693G400 Amborella trichopoda HOM05D004152 ORTHO05D004878 6.0e-74 281.6 218 67.0
AL5G40810 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 1.3e-73 280.4 221 65.6
Carub.0005s2573 Capsella rubella HOM05D004152 ORTHO05D004878 2.3e-73 279.6 180 73.9
Os02g0655300 Oryza sativa ssp. japonica HOM05D004152 ORTHO05D004878 3.9e-73 278.9 185 73.0
SMO274G0039 Selaginella moellendorffii HOM05D004152 ORTHO05D004878 5.1e-73 278.5 175 74.9
AT3G58990 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 6.7e-73 278.1 181 74.0
Lsat_1_v5_gn_6_92521 Lactuca sativa HOM05D004152 ORTHO05D004878 5.6e-72 275.0 185 73.5
Zm00001eb249330 Zea mays HOM05D004152 ORTHO05D004878 7.4e-72 274.6 184 71.2
Carub.0002s0595 Capsella rubella HOM05D004152 ORTHO05D004878 9.6e-72 274.2 227 63.4
Mapoly0001s0104 Marchantia polymorpha HOM05D004152 ORTHO05D004878 9.6e-72 274.2 178 74.2
Pp3c1_29090 Physcomitrium patens HOM05D004152 ORTHO05D004878 8.1e-71 271.2 174 73.0
BraA05t19345Z Brassica rapa HOM05D004152 ORTHO05D004878 3.1e-70 269.2 225 61.8
Pp3c14_19120 Physcomitrium patens HOM05D004152 ORTHO05D004878 3.1e-70 269.2 174 72.4
A05p03590 Brassica napus HOM05D004152 ORTHO05D004878 4.0e-70 268.9 236 58.5
Aa31LG1G24910 Aethionema arabicum HOM05D004152 ORTHO05D004878 6.9e-70 268.1 228 60.1
AagrBONN_evm.TU.Sc2ySwM_228.3330 Anthoceros agrestis HOM05D004152 ORTHO05D004878 9.0e-70 267.7 178 70.8
CARHR138170 Cardamine hirsuta HOM05D004152 ORTHO05D004878 1.5e-69 266.9 214 63.1
BcaC02g12414 Brassica carinata HOM05D004152 ORTHO05D004878 2.6e-69 266.2 233 59.2
Sp4g25230 Schrenkiella parvula HOM05D004152 ORTHO05D004878 3.4e-69 265.8 219 60.7
C04p04150 Brassica napus HOM05D004152 ORTHO05D004878 9.9e-69 264.2 219 60.3
BolC4t22055H Brassica oleracea HOM05D004152 ORTHO05D004878 9.9e-69 264.2 219 60.3
BcaNung03539 Brassica carinata HOM05D004152 ORTHO05D004878 2.9e-68 262.7 218 61.9
Thhalv10017125m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 2.9e-68 262.7 219 60.3
AT2G43100 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 2.4e-67 259.6 212 62.7
AL4G41750 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 4.2e-67 258.8 213 61.5
BcaC01g05264 Brassica carinata HOM05D004152 ORTHO05D004878 2.7e-66 256.1 219 61.6
Carub.0004s2558 Capsella rubella HOM05D004152 ORTHO05D004878 6.0e-66 255.0 214 60.3
CDE11G0227 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 5.1e-65 251.9 150 81.3
Cre06.g252650 Chlamydomonas reinhardtii HOM05D004152 ORTHO05D004878 1.5e-64 250.4 176 67.6
Gohir.A03G168700 Gossypium hirsutum HOM05D004152 ORTHO05D004878 1.1e-62 244.2 208 62.5
Dinv39162 Davidia involucrata HOM05D004152 ORTHO05D004878 1.8e-62 243.4 150 76.0
Nitab4.5_0001410g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 2.2e-60 236.5 168 67.3
SHI09309 Sapria himalayana HOM05D004152 ORTHO05D004878 6.7e-57 224.9 133 78.2
SalBow1G7183 Salvia bowleyana HOM05D004152 ORTHO05D004878 1.8e-54 216.9 144 75.0
HPP92_020921 Vanilla planifolia HOM05D004152 ORTHO05D004878 2.6e-53 213.0 186 59.7
Cc08_g12220 Coffea canephora HOM05D004152 ORTHO05D004878 4.5e-53 212.2 153 66.7
Actinidia31515 Actinidia chinensis HOM05D004152 ORTHO05D004878 5.5e-51 205.3 174 67.2
Dinv21650 Davidia involucrata HOM05D004152 ORTHO05D004878 2.3e-49 199.9 121 76.9
EL10Ac5g12363 Beta vulgaris HOM05D004152 ORTHO05D004878 1.1e-48 197.6 199 51.8
Lj8A267T12 Lonicera japonica HOM05D004152 ORTHO05D004878 1.1e-48 197.6 214 51.9
Nitab4.5_0002372g0010 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.9e-48 196.8 119 79.8
TPR.G10893 Trifolium pratense HOM05D004152 ORTHO05D004878 2.0e-45 186.8 127 75.6
Lj8A266T18 Lonicera japonica HOM05D004152 ORTHO05D004878 2.6e-45 186.4 214 50.9
Carub.0005s2576 Capsella rubella HOM05D004152 ORTHO05D004878 3.8e-44 182.6 163 58.3
Sed0021243 Sechium edule HOM05D004152 ORTHO05D004878 5.0e-44 182.2 118 76.3
Ah.12g054180 Amaranthus hybridus HOM05D004152 ORTHO05D004878 9.4e-43 177.9 194 47.9
Rhsim05G0121600 Rhododendron simsii HOM05D004152 ORTHO05D004878 1.2e-42 177.6 165 60.0
Oeu047732.1 Olea europaea HOM05D004152 ORTHO05D004878 9.7e-40 167.9 96 88.5
BcaB05g25308 Brassica carinata HOM05D004152 ORTHO05D004878 5.2e-33 145.6 165 53.9
Lsat_1_v5_gn_7_1160 Lactuca sativa HOM05D004152 ORTHO05D004878 1.7e-28 130.6 75 78.7
SalBow1G0783 Salvia bowleyana HOM05D001430 ORTHO05D004878 2.9e-28 129.8 103 61.2
C04p04140 Brassica napus HOM05D000373 ORTHO05D007048 8.5e-28 128.3 76 77.6
A05p03570 Brassica napus HOM05D000373 ORTHO05D007048 9.4e-27 124.8 76 75.0
Lsat_1_v5_gn_5_55401 Lactuca sativa HOM05D004152 ORTHO05D004878 3.3e-24 116.3 73 72.6
AUR62007106 Chenopodium quinoa HOM05D004152 ORTHO05D004878 4.8e-23 112.5 112 52.7
ATR0693G063 Amborella trichopoda HOM05D004152 ORTHO05D004878 1.2e-21 107.8 123 50.4
Rhsim03G0103100 Rhododendron simsii HOM05D004152 ORTHO05D004878 4.5e-21 105.9 135 50.4
GSVIVG01007403001 Vitis vinifera HOM05D004152 ORTHO05D004878 1.1e-14 84.7 164 36.6
COL.COLO4_34273 Corchorus olitorius HOM05D004152 ORTHO05D004878 1.4e-14 84.3 167 37.1
Ah.14g083550 Amaranthus hybridus HOM05D004152 ORTHO05D004878 2.9e-12 76.6 49 77.6
C03p28580 Brassica napus HOM05D004152 ORTHO05D004878 9.5e-11 71.6 83 43.4
MCO01G562 Micromonas commoda HOM05D003112 ORTHO05D003660 6.1e-10 68.9 151 33.8
PRCOL_00005264 Prasinoderma coloniale HOM05D003112 ORTHO05D003660 1.8e-09 67.4 153 30.1
Cfa024802 Carpinus fangiana HOM05D003112 ORTHO05D003660 2.3e-09 67.0 127 33.9
CsaV3_5G004360 Cucumis sativus L. HOM05D004152 ORTHO05D004878 8.8e-09 65.1 54 61.1
BcaB01g00650 Brassica carinata HOM05D004152 ORTHO05D004878 6.3e-07 58.9 47 55.3
BcaC01g01539 Brassica carinata HOM05D004152 ORTHO05D004878 1.8e-06 57.4 60 48.3
A03p23960 Brassica napus HOM05D004152 ORTHO05D004878 5.4e-06 55.8 56 57.1
Ca_28701_v3 Cicer arietinum L. HOM05D004152 ORTHO05D003660 9.2e-06 55.1 107 39.3


User provided reference genes

Program Settings