Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr21g0307161 Lupinus albus HOM05D000283 ORTHO05D005391 0.0e+00 1862.8 1002 100.0
VMungo0720G2546 Vigna mungo HOM05D000283 ORTHO05D005391 0.0e+00 1471.1 1022 78.0
Glyma.10G292300 Glycine max HOM05D000283 ORTHO05D005391 0.0e+00 1446.0 1027 77.6
Glyma.20G242100 Glycine max HOM05D000283 ORTHO05D005391 0.0e+00 1442.9 1022 77.1
arahy.Tifrunner.gnm1.ann1.M4B7ES Arachis hypogaea HOM05D000283 ORTHO05D005391 0.0e+00 1422.5 1027 76.1
arahy.Tifrunner.gnm1.ann1.79HMAA Arachis hypogaea HOM05D000283 ORTHO05D005391 0.0e+00 1420.6 1027 76.1
Lj5g0022773 Lotus japonicus HOM05D000283 ORTHO05D005391 0.0e+00 1401.7 1024 73.8
TPR.G10417 Trifolium pratense HOM05D000283 ORTHO05D005391 0.0e+00 1401.3 1022 74.7
Ca_10211_v3 Cicer arietinum L. HOM05D000283 ORTHO05D005391 0.0e+00 1307.0 1009 71.4
Medtr3g073080 Medicago truncatula HOM05D000283 ORTHO05D005391 0.0e+00 1260.4 1021 70.0
Phvul.007G008100 Phaseolus vulgaris HOM05D000283 ORTHO05D005391 0.0e+00 1161.7 901 74.0
Prupe.2G224600 Prunus persica HOM05D000283 ORTHO05D005391 0.0e+00 1111.7 1105 59.4
Haze_16972 Corylus avellana HOM05D000283 ORTHO05D005391 0.0e+00 1111.3 1087 58.7
Cfa001559 Carpinus fangiana HOM05D000283 ORTHO05D005391 0.0e+00 1110.1 1091 58.3
Atru.chr12.592 Acer truncatum HOM05D000283 ORTHO05D005391 0.0e+00 1096.3 1031 60.1
Thecc.10G063000 Theobroma cacao HOM05D000283 ORTHO05D005391 0.0e+00 1092.0 1023 58.9
Duzib128G1699 Durio zibethinus HOM05D000283 ORTHO05D005391 0.0e+00 1087.8 1024 60.1
Duzib106G1632 Durio zibethinus HOM05D000283 ORTHO05D005391 0.0e+00 1080.9 1022 59.2
RcHm_v2.0_Chr1g0365011 Rosa chinensis HOM05D000283 ORTHO05D005391 0.0e+00 1075.1 1055 58.4
Lalb_Chr02g0143871 Lupinus albus HOM05D000283 ORTHO05D005391 8.8e-310 1067.0 640 86.9
QL08p057534 Quercus lobata HOM05D000283 ORTHO05D005391 3.4e-309 1065.1 1134 56.7
Psat6g239040 Pisum sativum HOM05D000283 ORTHO05D005391 7.5e-309 1063.9 712 79.6
TWI15G0630 Tripterygium wilfordii HOM05D000283 ORTHO05D005391 5.4e-307 1057.7 1070 58.1
MD07G1184700 Malus domestica HOM05D000283 ORTHO05D005391 1.6e-306 1056.2 1089 56.0
Nn2g10554 Nelumbo nucifera HOM05D000283 ORTHO05D005391 4.5e-306 1054.7 1037 59.8
GSVIVG01032627001 Vitis vinifera HOM05D000283 ORTHO05D005391 4.5e-306 1054.7 971 63.2
Gorai.011G242800 Gossypium raimondii HOM05D000283 ORTHO05D005391 1.9e-304 1049.3 1021 58.1
Gohir.D10G217200 Gossypium hirsutum HOM05D000283 ORTHO05D005391 2.5e-304 1048.9 1021 58.1
MD01G1117300 Malus domestica HOM05D000283 ORTHO05D005391 5.6e-304 1047.7 1092 56.3
CiPaw.02G178600 Carya illinoinensis HOM05D000283 ORTHO05D005391 1.2e-303 1046.6 1083 56.3
CsaV3_5G006520 Cucumis sativus L. HOM05D000283 ORTHO05D005391 1.6e-303 1046.2 1023 57.8
FAN06G1635 Fragaria x ananassa HOM05D000283 ORTHO05D005391 2.8e-303 1045.4 1062 57.3
Gohir.A10G208900 Gossypium hirsutum HOM05D000283 ORTHO05D005391 4.7e-303 1044.6 1021 57.8
FvH4_7g20770 Fragaria vesca HOM05D000283 ORTHO05D005391 6.1e-303 1044.3 1062 57.2
TAR633G1628 Trochodendron aralioides HOM05D000283 ORTHO05D005391 1.0e-302 1043.5 1033 58.6
Ciclev10030610m.g Citrus clementina HOM05D000283 ORTHO05D005391 8.3e-300 1033.9 1022 58.9
CANSAT56G0145 Cannabis sativa HOM05D000283 ORTHO05D005391 1.4e-299 1033.1 1051 58.0
ClCG02G013670 Citrullus lanatus HOM05D000283 ORTHO05D005391 4.1e-299 1031.6 1049 58.1
MELO3C023808.2 Cucumis melo HOM05D000283 ORTHO05D005391 4.1e-299 1031.6 1023 57.6
COL.COLO4_05804 Corchorus olitorius HOM05D000283 ORTHO05D005391 5.4e-299 1031.2 1054 58.1
FAN10G3387 Fragaria x ananassa HOM05D000283 ORTHO05D005391 5.4e-299 1031.2 1034 57.8
TWI38G2098 Tripterygium wilfordii HOM05D000283 ORTHO05D005391 1.0e-297 1026.9 1093 57.2
Potri.008G047700 Populus trichocarpa HOM05D000283 ORTHO05D005391 1.7e-297 1026.2 1065 58.7
Manes.07G106300 Manihot esculenta HOM05D000283 ORTHO05D005391 8.6e-297 1023.8 1059 55.9
Cpa.g.sc1.303 Carica papaya HOM05D000283 ORTHO05D005391 1.8e-294 1016.1 1022 56.9
Sed0023338 Sechium edule HOM05D000283 ORTHO05D005391 1.8e-294 1016.1 1061 55.0
CSS0009141 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D005391 1.1e-288 996.9 1079 54.6
FAN06G4940 Fragaria x ananassa HOM05D000283 ORTHO05D005391 6.2e-287 991.1 1062 55.6
Manes.10G039400 Manihot esculenta HOM05D000283 ORTHO05D005391 3.1e-286 988.8 1035 58.1
Sabra08G0033800 Salix brachista HOM05D000283 ORTHO05D005391 4.0e-286 988.4 1102 53.4
Sed0010822 Sechium edule HOM05D000283 ORTHO05D005391 2.0e-285 986.1 1013 56.6
Hma1.2p1_0207F.1_g087980 Hydrangea macrophylla HOM05D000283 ORTHO05D005391 1.1e-283 980.3 1116 53.2
Cc02_g08650 Coffea canephora HOM05D000283 ORTHO05D005391 2.4e-283 979.2 1028 58.4
Sabra10G0165400 Salix brachista HOM05D000283 ORTHO05D005391 3.2e-283 978.8 1091 55.2
TAR636G1569 Trochodendron aralioides HOM05D000283 ORTHO05D005391 7.1e-283 977.6 1016 56.3
Lj8C92G16 Lonicera japonica HOM05D000283 ORTHO05D005391 2.5e-280 969.1 1077 55.2
PGR142G1216 Punica granatum HOM05D000283 ORTHO05D005391 2.3e-278 962.6 1036 58.1
Potri.010G213700 Populus trichocarpa HOM05D000283 ORTHO05D005391 2.4e-270 936.0 797 65.4
AUR62025540 Chenopodium quinoa HOM05D000283 ORTHO05D005391 1.7e-268 929.9 1031 55.0
Eucgr.G02777 Eucalyptus grandis HOM05D000283 ORTHO05D005391 6.4e-268 927.9 1024 54.8
Aqoxy5G01311 Aquilegia oxysepala HOM05D000283 ORTHO05D005391 1.4e-267 926.8 1107 50.6
AUR62042665 Chenopodium quinoa HOM05D000283 ORTHO05D005391 3.2e-267 925.6 1031 53.6
THA.LOC104809997 Tarenaya hassleriana HOM05D000283 ORTHO05D005391 1.5e-264 916.8 1031 53.9
Dinv31389 Davidia involucrata HOM05D000283 ORTHO05D005391 1.6e-263 913.3 915 58.1
THA.LOC104824248 Tarenaya hassleriana HOM05D000283 ORTHO05D005391 2.4e-262 909.4 1033 53.7
Ah.16g107830 Amaranthus hybridus HOM05D000283 ORTHO05D005391 1.1e-254 884.0 989 54.9
Sp4g21650 Schrenkiella parvula HOM05D000283 ORTHO05D005391 4.0e-254 882.1 1045 52.5
SpUn0018_0020 Schrenkiella parvula HOM05D000283 ORTHO05D005391 4.0e-254 882.1 1045 52.5
Sopen05g033370 Solanum pennellii HOM05D000283 ORTHO05D005391 4.0e-254 882.1 1027 51.7
MBI05_g22074_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D005391 6.9e-254 881.3 973 57.5
Thhalv10016180m.g Eutrema salsugineum HOM05D000283 ORTHO05D005391 3.8e-252 875.5 1036 53.2
Oeu050639.2 Olea europaea HOM05D000283 ORTHO05D005391 3.2e-251 872.5 1010 51.5
Solyc05g054910.3 Solanum lycopersicum HOM05D000283 ORTHO05D005391 7.1e-251 871.3 1027 51.4
Migut.F01533 Erythranthe guttata HOM05D000283 ORTHO05D005391 3.5e-250 869.0 928 54.1
AT2G39340 Arabidopsis thaliana HOM05D000283 ORTHO05D005391 8.7e-249 864.4 1044 51.1
Nitab4.5_0000914g0100 Nicotiana tabacum HOM05D000283 ORTHO05D005391 1.6e-247 860.1 1044 50.1
Nitab4.5_0010706g0030 Nicotiana tabacum HOM05D000283 ORTHO05D005391 2.8e-247 859.4 1075 48.7
Peaxi162Scf00015g02711 Petunia axillaris HOM05D000283 ORTHO05D005391 4.8e-247 858.6 1006 52.7
PSO339G6458 Papaver somniferum HOM05D000283 ORTHO05D005391 9.0e-246 854.4 1119 48.6
CARHR134130 Cardamine hirsuta HOM05D000283 ORTHO05D005391 2.6e-245 852.8 1033 51.9
HanXRQChr15g0496771 Helianthus annuus HOM05D000283 ORTHO05D005391 2.6e-245 852.8 1053 50.3
Aa31LG5G20290 Aethionema arabicum HOM05D000283 ORTHO05D005391 4.5e-245 852.0 1064 52.1
ECA232G0450 Erigeron canadensis HOM05D000283 ORTHO05D005391 1.7e-244 850.1 1044 50.8
EL10Ac2g03504 Beta vulgaris HOM05D000283 ORTHO05D005391 1.4e-243 847.0 825 57.9
ATR0681G328 Amborella trichopoda HOM05D000283 ORTHO05D005391 7.1e-243 844.7 1042 51.8
AL4G36680 Arabidopsis lyrata HOM05D000283 ORTHO05D005391 1.8e-238 830.1 1039 50.4
CAN.G1602.11 Capsicum annuum HOM05D000283 ORTHO05D005391 2.8e-231 806.2 831 55.1
PSO384G3825 Papaver somniferum HOM05D000283 ORTHO05D005391 2.4e-230 803.1 1164 47.3
BcaC02g12050 Brassica carinata HOM05D000283 ORTHO05D005391 4.1e-230 802.4 1050 48.7
C04p08450 Brassica napus HOM05D000283 ORTHO05D005391 4.1e-230 802.4 1050 48.7
A04p30550 Brassica napus HOM05D000283 ORTHO05D005391 1.1e-227 794.3 1042 50.2
CiPaw.01G279800 Carya illinoinensis HOM05D000283 ORTHO05D005391 2.5e-227 793.1 595 70.3
BraA04t18452Z Brassica rapa HOM05D000283 ORTHO05D005391 4.2e-227 792.3 1042 50.2
BcaB02g09134 Brassica carinata HOM05D000283 ORTHO05D005391 5.1e-225 785.4 1048 50.6
BolC4t28220H Brassica oleracea HOM05D000283 ORTHO05D005391 3.1e-222 776.2 1040 49.2
SalBow6G0521 Salvia bowleyana HOM05D000283 ORTHO05D005391 4.1e-222 775.8 1032 47.7
BcaC02g07413 Brassica carinata HOM05D000283 ORTHO05D005391 1.7e-220 770.4 1040 49.0
C04p67220 Brassica napus HOM05D000283 ORTHO05D005391 1.7e-220 770.4 1040 49.0
BcaB06g29078 Brassica carinata HOM05D000283 ORTHO05D005391 2.5e-219 766.5 1025 50.9
CDE09G1073 Ceratophyllum demersum HOM05D000283 ORTHO05D005391 1.0e-217 761.1 990 47.5
SGA_v2.0_scaffold291G47345 Striga asiatica HOM05D000283 ORTHO05D005391 1.5e-216 757.3 1034 47.2
BolC4t22443H Brassica oleracea HOM05D000283 ORTHO05D005391 9.7e-216 754.6 1046 47.7
Lsat_1_v5_gn_9_66761 Lactuca sativa HOM05D000283 ORTHO05D004861 2.2e-215 753.4 1112 46.1
A05p07060 Brassica napus HOM05D000283 ORTHO05D005391 3.7e-215 752.7 1039 47.7
BraA05t19671Z Brassica rapa HOM05D000283 ORTHO05D005391 3.7e-215 752.7 1039 47.7
Sc20g0002350 Simmondsia chinensis HOM05D000283 ORTHO05D005391 9.4e-211 738.0 884 54.4
unitig_749.g14014 Utricularia gibba HOM05D000283 ORTHO05D005391 5.7e-208 728.8 886 49.3
Carub.0004s2138 Capsella rubella HOM05D000283 ORTHO05D005391 5.2e-201 705.7 685 58.7
CDE02G4519 Ceratophyllum demersum HOM05D000283 ORTHO05D005391 7.7e-197 691.8 837 50.8
Hund22435 Selenicereus undatus HOM05D000283 ORTHO05D005391 1.0e-188 664.8 523 67.5
Zm00001eb351500 Zea mays HOM05D000283 ORTHO05D005391 1.7e-183 647.5 852 46.6
Os05g0462600 Oryza sativa ssp. japonica HOM05D000283 ORTHO05D005391 4.1e-182 642.9 830 48.1
HPP92_015567 Vanilla planifolia HOM05D000283 ORTHO05D005391 3.9e-180 636.3 834 47.4
Zm00001eb289820 Zea mays HOM05D000283 ORTHO05D005391 1.2e-176 624.8 855 46.7
AL5G26090 Arabidopsis lyrata HOM05D000283 ORTHO05D005391 1.9e-163 580.9 969 42.3
MSTRG.311 Avicennia marina HOM05D000283 ORTHO05D005391 4.9e-159 566.2 415 69.9
Mapoly0013s0152 Marchantia polymorpha HOM05D000283 ORTHO05D005391 1.2e-157 561.6 838 43.8
AagrBONN_evm.TU.Sc2ySwM_117.607 Anthoceros agrestis HOM05D000283 ORTHO05D005391 1.3e-151 541.6 1061 39.3
Actinidia03006 Actinidia chinensis HOM05D000283 ORTHO05D005391 3.5e-149 533.5 367 73.6
Actinidia38225 Actinidia chinensis HOM05D000283 ORTHO05D005391 4.3e-147 526.6 367 72.5
Os01g0836400 Oryza sativa ssp. japonica HOM05D000283 ORTHO05D005391 5.3e-145 519.6 933 40.6
Pp3c1_11990 Physcomitrium patens HOM05D000283 ORTHO05D005391 6.4e-135 486.1 972 38.5
SHI28193 Sapria himalayana HOM05D000283 ORTHO05D005391 7.1e-134 482.6 830 41.7
Pp3c2_24860 Physcomitrium patens HOM05D000283 ORTHO05D005391 4.6e-125 453.4 1007 36.5
DCAR_027697 Daucus carota HOM05D000283 ORTHO05D005391 1.2e-117 428.7 348 67.2
CBR_g53551 Chara braunii HOM05D000283 ORTHO05D005391 4.6e-117 426.8 726 42.4
SMO143G0323 Selaginella moellendorffii HOM05D000283 ORTHO05D005391 7.9e-117 426.0 355 62.3
Actinidia29199 Actinidia chinensis HOM05D000283 ORTHO05D005391 7.4e-107 392.9 336 66.1
Dinv25941 Davidia involucrata HOM05D000283 ORTHO05D004861 1.7e-98 365.2 506 48.0
DCAR_005053 Daucus carota HOM05D000283 ORTHO05D005391 1.7e-87 328.6 472 44.3
SEGI_11420 Sequoiadendron giganteum HOM05D000283 ORTHO05D005391 4.4e-83 313.9 375 51.2
DCAR_005047 Daucus carota HOM05D000283 ORTHO05D005391 1.5e-70 272.3 564 39.5
SMO141G0080 Selaginella moellendorffii HOM05D000283 ORTHO05D005391 9.8e-67 259.6 255 55.3
PRCOL_00005565 Prasinoderma coloniale HOM05D000283 ORTHO05D005391 6.0e-64 250.4 377 41.4
MCO13G063 Micromonas commoda HOM05D000283 ORTHO05D005391 2.3e-63 248.4 298 45.3
Hund28801 Selenicereus undatus HOM05D000283 ORTHO05D005391 1.2e-56 226.1 576 38.0
Hund28802 Selenicereus undatus HOM05D000283 ORTHO05D005391 1.2e-56 226.1 576 38.0
Oeu058323.4 Olea europaea HOM05D000283 ORTHO05D005391 3.1e-52 211.5 379 39.3
HPP92_015519 Vanilla planifolia HOM05D000283 ORTHO05D005391 9.2e-49 199.9 156 64.1
MBI05_g32639_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D005391 1.2e-48 199.5 154 66.2
Cre06.g258100 Chlamydomonas reinhardtii HOM05D000283 ORTHO05D005391 2.7e-48 198.4 341 35.2
CiPaw.01G279700 Carya illinoinensis HOM05D000283 ORTHO05D005391 7.8e-48 196.8 329 41.0
TAR381G0169 Trochodendron aralioides HOM05D000283 ORTHO05D005391 3.3e-46 191.4 168 63.1
MBI05_g30758_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D005391 8.9e-44 183.3 125 68.0
Gohir.D07G196232 Gossypium hirsutum HOM05D000283 ORTHO05D005391 2.6e-43 181.8 113 80.5
Lalb_Chr02g0143861 Lupinus albus HOM05D000283 ORTHO05D005391 1.4e-41 176.0 109 77.1
TAR381G1264 Trochodendron aralioides HOM05D000283 ORTHO05D005391 1.4e-41 176.0 268 41.4
SEGI_03051 Sequoiadendron giganteum HOM05D000283 ORTHO05D005391 1.9e-41 175.6 154 55.8
CSS0032527 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D005391 7.8e-40 170.2 189 54.0
QL10p060204 Quercus lobata HOM05D000283 ORTHO05D005391 8.7e-39 166.8 136 67.6
PRCOL_00002713 Prasinoderma coloniale HOM05D000283 ORTHO05D005391 1.1e-36 159.8 282 34.8
SHI28196 Sapria himalayana HOM05D000283 ORTHO05D005391 3.4e-35 154.8 136 60.3
CAN.G10752.1 Capsicum annuum HOM05D000283 ORTHO05D005391 6.0e-32 144.1 244 43.9
Psat3g183560 Pisum sativum HOM05D000283 ORTHO05D030474 1.5e-30 139.4 75 92.0
SEGI_11289 Sequoiadendron giganteum HOM05D000283 ORTHO05D005391 1.9e-30 139.0 408 37.0
Psat3g183640 Pisum sativum HOM05D000283 ORTHO05D030474 9.6e-30 136.7 75 90.7
PGR044G1425 Punica granatum HOM05D000283 ORTHO05D005391 9.0e-28 130.2 85 77.6
Actinidia29200 Actinidia chinensis HOM05D000283 ORTHO05D019495 2.6e-27 128.6 104 62.5
Medtr1g115940 Medicago truncatula HOM05D000283 ORTHO05D019495 6.9e-20 104.0 159 42.1
BraA03t11440Z Brassica rapa HOM05D000283 ORTHO05D019495 9.3e-17 93.6 83 55.4
CSS0012380 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D043332 1.5e-14 86.3 50 82.0
HanXRQChr09g0246591 Helianthus annuus HOM05D000283 ORTHO05D005391 1.9e-14 85.9 68 58.8
Psat1g113360 Pisum sativum HOM05D000283 ORTHO05D030474 2.5e-14 85.5 47 80.9
Psat6g098640 Pisum sativum HOM05D000283 ORTHO05D005391 4.3e-14 84.7 52 73.1
CSS0035555 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D043332 1.3e-13 83.2 50 78.0
PSO339G3701 Papaver somniferum HOM05D000283 ORTHO05D005391 2.1e-13 82.4 229 31.4
Nn2g12827 Nelumbo nucifera HOM05D000283 ORTHO05D005391 1.5e-11 76.3 107 44.9
BcaB01g03663 Brassica carinata HOM05D033592 ORTHO05D019495 3.4e-11 75.1 115 42.6
Glyma.14G115250 Glycine max HOM05D000283 ORTHO05D212723 1.7e-10 72.8 44 88.6
Psat7g108960 Pisum sativum HOM05D000283 ORTHO05D030474 2.9e-10 72.0 49 71.4
A03p22060 Brassica napus HOM05D000283 ORTHO05D019495 2.5e-09 68.9 59 55.9
THA.LOC104818830 Tarenaya hassleriana HOM05D002494 ORTHO05D002673 3.3e-06 58.5 275 26.2
CDE04G2572 Ceratophyllum demersum HOM05D002494 ORTHO05D002673 7.4e-06 57.4 250 24.0
Solyc12g035670.3 Solanum lycopersicum HOM05D002494 ORTHO05D002673 9.7e-06 57.0 263 26.2


User provided reference genes

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