Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr17g0345341 Lupinus albus HOM05D002034 ORTHO05D006399 4.0e-155 552.0 424 100.0
Glyma.14G197700 Glycine max HOM05D002034 ORTHO05D006399 1.4e-107 394.0 366 73.0
Lalb_Chr10g0103541 Lupinus albus HOM05D002034 ORTHO05D006399 1.6e-106 390.6 366 80.6
Phvul.008G257600 Phaseolus vulgaris HOM05D002034 ORTHO05D006399 3.3e-104 382.9 367 68.9
VMungo0647G1676 Vigna mungo HOM05D002034 ORTHO05D006399 6.8e-102 375.2 367 68.9
Lalb_Chr04g0252031 Lupinus albus HOM05D002034 ORTHO05D006399 3.4e-101 372.9 364 77.5
Glyma.02G230600 Glycine max HOM05D002034 ORTHO05D006399 4.9e-100 369.0 367 70.3
Psat5g153880 Pisum sativum HOM05D002034 ORTHO05D006399 3.1e-94 349.7 367 65.7
Potri.001G281300 Populus trichocarpa HOM05D002034 ORTHO05D006399 1.5e-93 347.4 369 64.2
Duzib170G0382 Durio zibethinus HOM05D002034 ORTHO05D006399 9.8e-93 344.7 376 68.1
Potri.009G076600 Populus trichocarpa HOM05D002034 ORTHO05D006399 2.2e-92 343.6 365 67.1
Lj6g0014994 Lotus japonicus HOM05D002034 ORTHO05D006399 4.9e-92 342.4 373 69.4
Medtr3g031740 Medicago truncatula HOM05D002034 ORTHO05D006399 6.4e-92 342.0 365 66.3
Nitab4.5_0004174g0030 Nicotiana tabacum HOM05D002034 ORTHO05D006399 1.6e-90 337.4 366 60.4
Manes.02G216300 Manihot esculenta HOM05D002034 ORTHO05D006399 2.7e-90 336.7 330 64.5
Nitab4.5_0000967g0020 Nicotiana tabacum HOM05D002034 ORTHO05D006399 7.3e-88 328.6 368 62.0
Actinidia34475 Actinidia chinensis HOM05D002034 ORTHO05D006399 1.6e-87 327.4 371 57.4
vmacro14615 Vaccinium macrocarpon HOM05D002034 ORTHO05D006399 2.8e-87 326.6 401 58.1
Hund18957 Selenicereus undatus HOM05D002034 ORTHO05D006399 1.4e-86 324.3 346 62.1
Hma1.2p1_0841F.1_g226910 Hydrangea macrophylla HOM05D002034 ORTHO05D006399 8.9e-86 321.6 326 64.1
Phvul.006G072900 Phaseolus vulgaris HOM05D002034 ORTHO05D006399 1.2e-85 321.2 383 63.2
Hma1.2p1_0146F.1_g065460 Hydrangea macrophylla HOM05D002034 ORTHO05D006399 9.8e-85 318.2 368 63.6
TWI79G0783 Tripterygium wilfordii HOM05D002034 ORTHO05D006399 9.8e-85 318.2 382 64.1
CAN.G741.43 Capsicum annuum HOM05D002034 ORTHO05D006399 1.7e-84 317.4 367 52.9
EL10Ac7g15904 Beta vulgaris HOM05D002034 ORTHO05D006399 2.9e-84 316.6 369 61.2
Dinv28685 Davidia involucrata HOM05D002034 ORTHO05D006399 6.4e-84 315.5 371 65.0
ClCG03G000290 Citrullus lanatus HOM05D002034 ORTHO05D006399 1.1e-83 314.7 387 60.2
QL01p039969 Quercus lobata HOM05D002034 ORTHO05D006399 1.4e-83 314.3 368 65.8
Sabra09G0058400 Salix brachista HOM05D002034 ORTHO05D006399 2.4e-83 313.5 334 71.6
MELO3C020506.2 Cucumis melo HOM05D002034 ORTHO05D006399 9.2e-83 311.6 385 58.4
Thecc.09G355700 Theobroma cacao HOM05D002034 ORTHO05D006399 1.2e-82 311.2 373 61.9
Actinidia23869 Actinidia chinensis HOM05D002034 ORTHO05D006399 2.7e-82 310.1 345 57.7
PGSC0003DMG400030374 Solanum tuberosum HOM05D002034 ORTHO05D006399 2.7e-82 310.1 364 59.3
Glyma.11G165000 Glycine max HOM05D002034 ORTHO05D006399 6.0e-82 308.9 387 59.2
Nitab4.5_0004155g0010 Nicotiana tabacum HOM05D002034 ORTHO05D006399 1.0e-81 308.1 366 57.1
Manes.18G141005 Manihot esculenta HOM05D002034 ORTHO05D006399 2.3e-81 307.0 372 61.3
CsaV3_1G036630 Cucumis sativus L. HOM05D002034 ORTHO05D006399 8.6e-81 305.1 386 59.3
C03p14310 Brassica napus HOM05D002034 ORTHO05D006399 2.5e-80 303.5 374 55.6
Nitab4.5_0006148g0010 Nicotiana tabacum HOM05D002034 ORTHO05D006399 3.3e-80 303.1 371 56.9
Lj1C128G5 Lonicera japonica HOM05D002034 ORTHO05D006399 1.6e-79 300.8 354 66.7
BraA03t10531Z Brassica rapa HOM05D002034 ORTHO05D004251 4.7e-79 299.3 373 49.9
CDE06G0527 Ceratophyllum demersum HOM05D002034 ORTHO05D006399 6.2e-79 298.9 362 64.4
Sopen06g033600 Solanum pennellii HOM05D002034 ORTHO05D006399 2.3e-78 297.0 370 57.0
Prupe.6G050700 Prunus persica HOM05D002034 ORTHO05D006399 4.0e-78 296.2 376 63.3
Sabra16G0175000 Salix brachista HOM05D002034 ORTHO05D006399 2.0e-77 293.9 383 60.1
arahy.Tifrunner.gnm1.ann1.99AA0S Arachis hypogaea HOM05D002034 ORTHO05D006399 7.5e-77 292.0 364 64.8
Glyma.18G058200 Glycine max HOM05D002034 ORTHO05D006399 9.9e-77 291.6 373 62.5
FAN21G0003 Fragaria x ananassa HOM05D002034 ORTHO05D006399 1.3e-76 291.2 374 66.3
Sed0020719 Sechium edule HOM05D002034 ORTHO05D006399 2.9e-76 290.0 388 55.4
Peaxi162Scf00390g00821 Petunia axillaris HOM05D002034 ORTHO05D006399 4.9e-76 289.3 365 60.3
arahy.Tifrunner.gnm1.ann1.60GRLQ Arachis hypogaea HOM05D002034 ORTHO05D006399 6.4e-76 288.9 363 59.5
unitig_26.g10217 Utricularia gibba HOM05D002034 ORTHO05D006399 6.4e-76 288.9 369 54.5
Aa31LG11G250 Aethionema arabicum HOM05D002034 ORTHO05D006399 1.9e-75 287.3 373 58.2
Gohir.A03G026200 Gossypium hirsutum HOM05D002034 ORTHO05D006399 3.2e-75 286.6 370 64.6
Nn2g13237 Nelumbo nucifera HOM05D002034 ORTHO05D006399 4.1e-75 286.2 371 56.6
Ca_05091_v3 Cicer arietinum L. HOM05D002034 ORTHO05D006399 7.1e-75 285.4 367 63.5
Ca_14994_v3 Cicer arietinum L. HOM05D002034 ORTHO05D006399 7.1e-75 285.4 367 63.5
CDE04G0201 Ceratophyllum demersum HOM05D002034 ORTHO05D006399 1.6e-74 284.3 256 62.9
Cfa011758 Carpinus fangiana HOM05D002034 ORTHO05D006399 2.1e-74 283.9 366 62.8
Gohir.A03G026400 Gossypium hirsutum HOM05D002034 ORTHO05D006399 6.0e-74 282.3 367 63.2
TAR633G1742 Trochodendron aralioides HOM05D002034 ORTHO05D006399 6.0e-74 282.3 331 61.6
arahy.Tifrunner.gnm1.ann1.S7G6UF Arachis hypogaea HOM05D002034 ORTHO05D006399 7.8e-74 282.0 392 55.4
CiPaw.14G055200 Carya illinoinensis HOM05D002034 ORTHO05D006399 1.0e-73 281.6 368 62.8
CARHR272300 Cardamine hirsuta HOM05D002034 ORTHO05D006399 1.3e-73 281.2 369 55.8
BraA02t05843Z Brassica rapa HOM05D002034 ORTHO05D006399 3.0e-73 280.0 369 50.4
Duzib168G0356 Durio zibethinus HOM05D002034 ORTHO05D006399 3.9e-73 279.6 376 63.3
Atru.chr3.4131 Acer truncatum HOM05D002034 ORTHO05D006399 6.6e-73 278.9 379 64.6
VMungo0540G2394 Vigna mungo HOM05D002034 ORTHO05D006399 6.6e-73 278.9 361 59.6
Dinv09661 Davidia involucrata HOM05D002034 ORTHO05D006399 1.1e-72 278.1 369 59.6
GSVIVG01030073001 Vitis vinifera HOM05D000417 ORTHO05D000342 1.5e-72 277.7 379 45.6
MBI05_g02399_MAGBIO Magnolia biondii HOM05D002034 ORTHO05D006399 3.3e-72 276.6 335 60.6
MD03G1060300 Malus domestica HOM05D002034 ORTHO05D006399 4.3e-72 276.2 336 70.8
AT5G58470 Arabidopsis thaliana HOM05D002034 ORTHO05D006399 7.3e-72 275.4 333 60.1
Carub.0008s1906 Capsella rubella HOM05D002034 ORTHO05D006399 9.5e-72 275.0 372 51.6
C09p50360 Brassica napus HOM05D002034 ORTHO05D006399 1.6e-71 274.2 373 50.4
RcHm_v2.0_Chr5g0071281 Rosa chinensis HOM05D002034 ORTHO05D006399 2.1e-71 273.9 377 65.8
A10p15750 Brassica napus HOM05D002034 ORTHO05D004251 6.2e-71 272.3 326 55.8
ECA248G0185 Erigeron canadensis HOM05D002034 ORTHO05D006399 6.2e-71 272.3 377 62.9
Cc01_g14710 Coffea canephora HOM05D000417 ORTHO05D000342 8.1e-71 271.9 365 56.7
Gohir.D05G108500 Gossypium hirsutum HOM05D002034 ORTHO05D006399 1.1e-70 271.6 365 58.9
Gorai.009G112700 Gossypium raimondii HOM05D002034 ORTHO05D006399 1.1e-70 271.6 363 58.7
AL8G34690 Arabidopsis lyrata HOM05D002034 ORTHO05D006399 1.8e-70 270.8 339 51.0
BcaC03g14089 Brassica carinata HOM05D002034 ORTHO05D006399 5.2e-70 269.2 369 50.7
C02p13300 Brassica napus HOM05D002034 ORTHO05D006399 8.9e-70 268.5 372 50.3
BolC2t07445H Brassica oleracea HOM05D002034 ORTHO05D006399 8.9e-70 268.5 372 50.5
Cpa.g.sc2.376 Carica papaya HOM05D002034 ORTHO05D006399 1.2e-69 268.1 227 67.4
Oeu053356.2 Olea europaea HOM05D002034 ORTHO05D006399 2.0e-69 267.3 367 54.5
Sed0021639 Sechium edule HOM05D002034 ORTHO05D006399 2.0e-69 267.3 400 50.5
BcaB08g36182 Brassica carinata HOM05D002034 ORTHO05D006399 7.6e-69 265.4 329 58.1
Gohir.D03G142300 Gossypium hirsutum HOM05D002034 ORTHO05D006399 7.6e-69 265.4 336 66.7
Gorai.003G149400 Gossypium raimondii HOM05D002034 ORTHO05D006399 7.6e-69 265.4 336 66.7
SGA_v2.0_scaffold104G30143 Striga asiatica HOM05D002034 ORTHO05D006399 2.9e-68 263.5 412 56.8
Lsat_1_v5_gn_5_174460 Lactuca sativa HOM05D000417 ORTHO05D000342 4.9e-68 262.7 373 60.1
Sp6g20160 Schrenkiella parvula HOM05D002034 ORTHO05D006399 8.4e-68 261.9 363 55.9
Zm00001eb336220 Zea mays HOM05D002034 ORTHO05D006399 8.4e-68 261.9 416 62.3
A03p12200 Brassica napus HOM05D002034 ORTHO05D004251 1.1e-67 261.5 373 52.5
HPP92_003242 Vanilla planifolia HOM05D002034 ORTHO05D006399 1.1e-67 261.5 390 56.4
BcaB05g22434 Brassica carinata HOM05D002034 ORTHO05D006399 1.4e-67 261.2 370 55.7
BraA10t43645Z Brassica rapa HOM05D002034 ORTHO05D006399 1.4e-67 261.2 326 55.5
A02p07680 Brassica napus HOM05D002034 ORTHO05D006399 2.4e-67 260.4 365 56.7
Ah.08g215230 Amaranthus hybridus HOM05D002034 ORTHO05D006399 9.2e-67 258.5 351 57.0
DCAR_007354 Daucus carota HOM05D002034 ORTHO05D006399 9.2e-67 258.5 322 57.5
Lj2A1091G43 Lonicera japonica HOM05D002034 ORTHO05D006399 1.2e-66 258.1 383 45.4
Migut.N00767 Erythranthe guttata HOM05D002034 ORTHO05D006399 2.7e-66 256.9 364 54.9
Zm00001eb123460 Zea mays HOM05D002034 ORTHO05D006399 2.7e-66 256.9 403 56.3
FvH4_3g39510 Fragaria vesca HOM05D002034 ORTHO05D006399 6.0e-66 255.8 375 64.0
Hma1.2p1_2630F.1_g325730 Hydrangea macrophylla HOM05D002034 ORTHO05D006399 1.7e-65 254.2 266 57.1
FAN11G3559 Fragaria x ananassa HOM05D002034 ORTHO05D006399 2.3e-65 253.8 371 64.2
FAN16G2984 Fragaria x ananassa HOM05D002034 ORTHO05D006399 3.9e-65 253.1 375 63.5
Gohir.D03G142100 Gossypium hirsutum HOM05D002034 ORTHO05D006399 5.1e-65 252.7 334 63.2
Solyc06g082220.4 Solanum lycopersicum HOM05D002034 ORTHO05D006399 5.1e-65 252.7 268 57.8
BolC9t57892H Brassica oleracea HOM05D002034 ORTHO05D006399 6.6e-65 252.3 368 52.4
SHI19198 Sapria himalayana HOM05D002034 ORTHO05D006399 6.6e-65 252.3 372 52.2
SEGI_19079 Sequoiadendron giganteum HOM05D002034 ORTHO05D006399 6.6e-65 252.3 360 62.2
AUR62009684 Chenopodium quinoa HOM05D002034 ORTHO05D006399 1.9e-64 250.8 263 61.6
Thhalv10012621m.g Eutrema salsugineum HOM05D000417 ORTHO05D000342 1.9e-64 250.8 372 49.5
Aqoxy1G01307 Aquilegia oxysepala HOM05D002034 ORTHO05D006399 3.6e-63 246.5 322 60.6
Gorai.003G149100 Gossypium raimondii HOM05D002034 ORTHO05D006399 1.4e-62 244.6 335 63.0
MD11G1063400 Malus domestica HOM05D002034 ORTHO05D006399 2.0e-61 240.7 376 62.2
AUR62001888 Chenopodium quinoa HOM05D002034 ORTHO05D006399 4.4e-61 239.6 215 62.3
Os01g0164400 Oryza sativa ssp. japonica HOM05D002034 ORTHO05D006399 4.4e-61 239.6 162 72.8
Oeu064670.1 Olea europaea HOM05D002034 ORTHO05D006399 1.3e-60 238.0 369 51.2
HPP92_025110 Vanilla planifolia HOM05D002034 ORTHO05D006399 1.3e-60 238.0 340 45.6
FAN25G3394 Fragaria x ananassa HOM05D000417 ORTHO05D000342 2.9e-60 236.9 368 63.0
ATR0174G006 Amborella trichopoda HOM05D002034 ORTHO05D006399 4.2e-59 233.0 399 52.6
CSS0042328 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 4.2e-59 233.0 343 51.6
Gohir.A05G108332 Gossypium hirsutum HOM05D002034 ORTHO05D006399 3.9e-57 226.5 328 48.2
COL.COLO4_11127 Corchorus olitorius HOM05D002034 ORTHO05D006399 8.7e-57 225.3 181 68.0
CSS0049450 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 3.1e-54 216.9 356 45.8
CSS0028239 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 4.5e-53 213.0 342 48.2
Haze_24395 Corylus avellana HOM05D002034 ORTHO05D006399 7.6e-53 212.2 263 53.6
TAR623G0025 Trochodendron aralioides HOM05D002034 ORTHO05D006399 2.9e-52 210.3 368 51.4
Mapoly0074s0009 Marchantia polymorpha HOM05D002034 ORTHO05D006399 1.6e-47 194.5 122 73.8
AagrBONN_evm.TU.Sc2ySwM_344.1306 Anthoceros agrestis HOM05D002034 ORTHO05D006399 3.4e-45 186.8 169 61.5
SMO358G0702 Selaginella moellendorffii HOM05D002034 ORTHO05D006399 6.4e-44 182.6 155 70.3
Ciclev10027796m.g Citrus clementina HOM05D000417 ORTHO05D000342 8.4e-44 182.2 258 58.1
Pp3c12_3430 Physcomitrium patens HOM05D002034 ORTHO05D006399 1.1e-40 171.8 321 39.9
BolC9t57305H Brassica oleracea HOM05D002034 ORTHO05D006399 9.6e-40 168.7 298 52.3
CBR_g17146 Chara braunii HOM05D002034 ORTHO05D006399 4.8e-39 166.4 317 42.6
Sc21g0005190 Simmondsia chinensis HOM05D002034 ORTHO05D006399 4.0e-38 163.3 259 52.5
Pp3c17_1620 Physcomitrium patens HOM05D002034 ORTHO05D006399 2.0e-37 161.0 320 35.3
BolC3t13875H Brassica oleracea HOM05D002034 ORTHO05D006399 4.2e-35 153.3 262 45.4
Actinidia23208 Actinidia chinensis HOM05D002034 ORTHO05D006399 9.7e-32 142.1 100 70.0
A09p54750 Brassica napus HOM05D002034 ORTHO05D006399 1.9e-27 127.9 177 49.7
BcaC01g04152 Brassica carinata HOM05D002034 ORTHO05D006399 6.1e-26 122.9 294 36.1
C02p38030 Brassica napus HOM05D002034 ORTHO05D006399 1.8e-25 121.3 194 46.9
BolC9t53947H Brassica oleracea HOM05D002034 ORTHO05D006399 4.8e-23 113.2 166 45.8
C04p55240 Brassica napus HOM05D002034 ORTHO05D006399 1.7e-20 104.8 144 52.8
MCO15G578 Micromonas commoda HOM05D002034 ORTHO05D000124 5.5e-19 99.8 114 42.1
C09p44360 Brassica napus HOM05D002034 ORTHO05D006399 6.7e-17 92.8 243 41.6
C02p11700 Brassica napus HOM05D002034 ORTHO05D006399 1.1e-16 92.0 313 33.5
Nn1g04222 Nelumbo nucifera HOM05D002034 ORTHO05D006399 3.9e-09 67.0 144 51.4
vmacro16010 Vaccinium macrocarpon HOM05D005264 ORTHO05D005428 2.0e-08 64.7 95 40.0
Os09g0299500 Oryza sativa ssp. japonica HOM05D005264 ORTHO05D005428 2.6e-08 64.3 120 36.7
Lsat_1_v5_gn_3_32780 Lactuca sativa HOM05D005264 ORTHO05D005428 7.4e-08 62.8 92 41.3
MCO15G549 Micromonas commoda HOM05D005264 ORTHO05D005428 7.4e-08 62.8 41 65.9
CBR_g224 Chara braunii HOM05D005264 ORTHO05D005428 9.7e-08 62.4 40 60.0
SalBow1G6014 Salvia bowleyana HOM05D005264 ORTHO05D005428 3.7e-07 60.5 92 40.2
DCAR_002562 Daucus carota HOM05D005264 ORTHO05D005428 8.2e-07 59.3 120 36.7
Mapoly0154s0004 Marchantia polymorpha HOM05D005264 ORTHO05D005428 1.4e-06 58.5 38 60.5
SMO134G0144 Selaginella moellendorffii HOM05D005264 ORTHO05D005428 1.4e-06 58.5 34 64.7
Zm00001eb104370 Zea mays HOM05D005264 ORTHO05D005428 1.4e-06 58.5 33 72.7
Zm00001eb320850 Zea mays HOM05D005264 ORTHO05D005428 1.4e-06 58.5 33 72.7
ClCG10G015380 Citrullus lanatus HOM05D005264 ORTHO05D005428 2.4e-06 57.8 96 39.6
Cfa008720 Carpinus fangiana HOM05D005264 ORTHO05D001742 3.1e-06 57.4 116 37.9
Potri.010G170700 Populus trichocarpa HOM05D005264 ORTHO05D005428 3.1e-06 57.4 96 37.5
TAR622G0680 Trochodendron aralioides HOM05D005264 ORTHO05D005428 4.1e-06 57.0 100 36.0
AagrBONN_evm.TU.Sc2ySwM_344.985 Anthoceros agrestis HOM05D005264 ORTHO05D005428 5.3e-06 56.6 35 60.0
Nitab4.5_0002113g0070 Nicotiana tabacum HOM05D005264 ORTHO05D005428 5.3e-06 56.6 34 67.6
AUR62017649 Chenopodium quinoa HOM05D005264 ORTHO05D005428 7.0e-06 56.2 92 37.0
DCAR_030406 Daucus carota HOM05D005264 ORTHO05D005428 7.0e-06 56.2 33 66.7
Os07g0296200 Oryza sativa ssp. japonica HOM05D005264 ORTHO05D005428 7.0e-06 56.2 40 62.5
EL10Ac9g22906 Beta vulgaris HOM05D005264 ORTHO05D005428 9.1e-06 55.8 93 37.6
Cpa.g.sc393.4 Carica papaya HOM05D005264 ORTHO05D005428 9.1e-06 55.8 38 60.5
PSO063G3914 Papaver somniferum HOM05D005264 ORTHO05D005428 9.1e-06 55.8 35 62.9
PSO782G4655 Papaver somniferum HOM05D005264 ORTHO05D005428 9.1e-06 55.8 35 62.9
Sabra10G0130200 Salix brachista HOM05D005264 ORTHO05D005428 9.1e-06 55.8 113 35.4
SEGI_41358 Sequoiadendron giganteum HOM05D005264 ORTHO05D005428 9.1e-06 55.8 38 60.5


User provided reference genes

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