Gene: MCO15G578

General Information

Structural Information

  • Species Micromonas commoda
  • Gene Identifier MCO15G578
  • Transcript Identifier MCO15G578.1
  • Gene Type Coding gene
  • Location Chr_07 : 228171-229636 : negative

Gene Family Information

  • ID HOM05D002034
  • #Genes/#Species 326/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid 101327.3.0.229
  • id fgenesh2_pg.C_Chr_07000071.3.0.229
  • pacid 27404638

Descriptions

  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006406
ISO
PLAZA Integrative OrthologymRNA export from nucleus AT2G21660
GO:0000380
ISO
PLAZA Integrative Orthologyalternative mRNA splicing, via spliceosome AT2G21660
GO:0016554
ISO
PLAZA Integrative Orthologycytidine to uridine editing AT5G61030
GO:0006970
ISO
PLAZA Integrative Orthologyresponse to osmotic stress AT4G13850
GO:0046686
ISO
PLAZA Integrative Orthologyresponse to cadmium ion AT2G21660
GO:0007623
ISO
PLAZA Integrative Orthologycircadian rhythm AT2G21660
GO:0009845
ISO
PLAZA Integrative Orthologyseed germination AT4G13850
GO:0032508
ISO
PLAZA Integrative OrthologyDNA duplex unwinding AT2G21660
GO:0045087
ISO
PLAZA Integrative Orthologyinnate immune response AT2G21660
GO:0010501
ISO
PLAZA Integrative OrthologyRNA secondary structure unwinding AT2G21660
GO:0010228
ISO
PLAZA Integrative Orthologyvegetative to reproductive phase transition of meristem AT2G21660
GO:0010043
ISO
PLAZA Integrative Orthologyresponse to zinc ion AT2G21660
GO:0009651
ISO
PLAZA Integrative Orthologyresponse to salt stress AT4G13850
GO:0080156
ISO
PLAZA Integrative Orthologymitochondrial mRNA modification AT5G61030
GO:0009631
ISO
PLAZA Integrative Orthologycold acclimation AT3G26420
GO:0060567
ISO
PLAZA Integrative Orthologynegative regulation of DNA-templated transcription, termination AT4G13850
GO:0009414
ISO
PLAZA Integrative Orthologyresponse to water deprivation AT4G13850
GO:0009409
ISO
PLAZA Integrative Orthologyresponse to cold AT5G61030
GO:0010119
ISO
PLAZA Integrative Orthologyregulation of stomatal movement AT2G21660

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT5G61030
GO:0042803
ISO
PLAZA Integrative Orthologyprotein homodimerization activity AT1G74230
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT5G61030
GO:0034336
ISO
PLAZA Integrative Orthologymisfolded RNA binding AT4G13850
GO:0003697
ISO
PLAZA Integrative Orthologysingle-stranded DNA binding AT5G61030
GO:0046872
IEA
InterPrometal ion binding
GO:0005096
ISO
PLAZA Homology (enrichment)GTPase activator activity HOM05D002034
GO:0003690
ISO
PLAZA Integrative Orthologydouble-stranded DNA binding AT4G13850
GO:0043621
ISO
PLAZA Integrative Orthologyprotein self-association AT1G74230
GO:0003676
IEA
InterPronucleic acid binding
GO:0000166
ISO
PLAZA Integrative Orthologynucleotide binding AT3G26420
GO:0005524
ISO
PLAZA Integrative OrthologyATP binding AT5G61030
GO:0003723
ISO
PLAZA Integrative OrthologyRNA binding AT5G61030
GO:0005507
ISO
PLAZA Integrative Orthologycopper ion binding AT5G61030

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT3G26420
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT3G26420
GO:0005777
ISO
PLAZA Integrative Orthologyperoxisome AT2G21660
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT3G26420
GO:0005739
ISO
PLAZA Integrative Orthologymitochondrion AT5G61030
GO:0009507
ISO
PLAZA Integrative Orthologychloroplast AT5G58470
GO:0009506
ISO
PLAZA Integrative Orthologyplasmodesma AT2G21660

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001876 Zinc finger, RanBP2-type
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 RNA-binding domain superfamily
IPR041367 E3 ligase, CCCH-type zinc finger
IPR000504 RNA recognition motif domain
IPR000571 Zinc finger, CCCH-type
IPR036443 Zinc finger, RanBP2-type superfamily
Mapman id Description
35.1 not assigned.annotated