Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr14g0368981 Lupinus albus HOM05D001988 ORTHO05D004985 0.0e+00 1368.6 703 100.0
Glyma.11G111300 Glycine max HOM05D001988 ORTHO05D004985 2.7e-265 918.7 713 67.7
Phvul.011G039300 Phaseolus vulgaris HOM05D001988 ORTHO05D004985 2.6e-260 902.1 711 67.7
VMungo1127G0715 Vigna mungo HOM05D001988 ORTHO05D004985 9.4e-258 893.6 707 66.9
Lj3g0010541 Lotus japonicus HOM05D001988 ORTHO05D004985 2.4e-237 825.9 704 62.9
Ca_20931_v3 Cicer arietinum L. HOM05D001988 ORTHO05D004985 4.4e-223 778.5 707 59.3
arahy.Tifrunner.gnm1.ann1.8UN484 Arachis hypogaea HOM05D001988 ORTHO05D004985 2.4e-213 746.1 726 56.5
arahy.Tifrunner.gnm1.ann1.41IR6N Arachis hypogaea HOM05D001988 ORTHO05D004985 9.2e-213 744.2 729 56.8
arahy.Tifrunner.gnm1.ann1.AY0VQT Arachis hypogaea HOM05D001988 ORTHO05D004985 4.3e-210 735.3 728 56.3
Medtr4g057650 Medicago truncatula HOM05D001988 ORTHO05D004985 1.1e-208 730.7 705 56.9
Cfa008981 Carpinus fangiana HOM05D001988 ORTHO05D004985 9.9e-207 724.2 723 55.6
Psat7g139200 Pisum sativum HOM05D001988 ORTHO05D004985 1.6e-204 716.8 705 56.0
TPR.G27077 Trifolium pratense HOM05D001988 ORTHO05D004985 1.5e-199 700.3 703 55.8
Medtr4g071660 Medicago truncatula HOM05D001988 ORTHO05D004985 1.6e-196 690.3 685 56.1
QL03p064038 Quercus lobata HOM05D001988 ORTHO05D004985 1.7e-195 686.8 719 54.5
QL03p063402 Quercus lobata HOM05D001988 ORTHO05D004985 1.1e-194 684.1 719 54.2
ClCG11G010950 Citrullus lanatus HOM05D001988 ORTHO05D004985 1.5e-191 673.7 725 52.6
Haze_12013 Corylus avellana HOM05D001988 ORTHO05D004985 3.8e-190 669.1 839 47.6
Prupe.1G174900 Prunus persica HOM05D001988 ORTHO05D004985 1.6e-188 663.7 710 51.7
Actinidia19875 Actinidia chinensis HOM05D001988 ORTHO05D004985 3.9e-187 659.1 722 50.8
MELO3C008752.2 Cucumis melo HOM05D001988 ORTHO05D004985 1.9e-186 656.8 732 50.7
MD04G1025400 Malus domestica HOM05D001988 ORTHO05D004985 1.9e-186 656.8 707 52.2
Sed0003814 Sechium edule HOM05D001988 ORTHO05D004985 6.9e-184 648.3 717 52.9
GSVIVG01019982001 Vitis vinifera HOM05D001988 ORTHO05D004985 2.9e-182 642.9 698 50.3
CANSAT54G1389 Cannabis sativa HOM05D001988 ORTHO05D004985 2.1e-180 636.7 711 50.6
Manes.01G185700 Manihot esculenta HOM05D001988 ORTHO05D004985 2.7e-180 636.3 719 50.5
Eucgr.B03445 Eucalyptus grandis HOM05D001988 ORTHO05D004985 3.0e-179 632.9 714 48.9
Cpa.g.sc128.24 Carica papaya HOM05D001988 ORTHO05D004985 8.7e-179 631.3 715 48.1
PGR102G2417 Punica granatum HOM05D001988 ORTHO05D004985 6.2e-177 625.2 710 51.4
Nn4g23157 Nelumbo nucifera HOM05D001988 ORTHO05D004985 1.8e-176 623.6 716 52.5
CiPaw.05G135300 Carya illinoinensis HOM05D001988 ORTHO05D004985 2.4e-176 623.2 566 60.1
CSS0030030 Camellia sinensis var. sinensis HOM05D001988 ORTHO05D004985 4.0e-176 622.5 718 48.7
Rhsim12G0063800 Rhododendron simsii HOM05D001988 ORTHO05D004985 1.2e-175 620.9 714 48.9
FAN21G2649 Fragaria x ananassa HOM05D001988 ORTHO05D004985 4.5e-175 619.0 707 49.5
FvH4_3g26291 Fragaria vesca HOM05D001988 ORTHO05D004985 6.5e-174 615.1 707 49.2
TPR.G16225 Trifolium pratense HOM05D001988 ORTHO05D004985 5.5e-173 612.1 702 50.3
FAN11G2867 Fragaria x ananassa HOM05D001988 ORTHO05D006298 9.3e-173 611.3 707 48.9
Gohir.D05G304800 Gossypium hirsutum HOM05D001988 ORTHO05D004985 4.6e-172 609.0 717 47.7
Gorai.009G324500 Gossypium raimondii HOM05D001988 ORTHO05D004985 1.8e-171 607.1 714 47.8
FAN25G3604 Fragaria x ananassa HOM05D001988 ORTHO05D006298 3.9e-171 605.9 707 48.9
vmacro01260 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 8.7e-171 604.7 709 49.4
Duzib251G0871 Durio zibethinus HOM05D001988 ORTHO05D004985 4.3e-170 602.4 713 47.5
Thecc.02G346500 Theobroma cacao HOM05D001988 ORTHO05D004985 5.7e-170 602.1 714 48.6
Medtr5g067430 Medicago truncatula HOM05D001988 ORTHO05D004985 3.7e-169 599.4 705 50.6
Ciclev10030768m.g Citrus clementina HOM05D001988 ORTHO05D004985 1.5e-167 594.0 729 46.8
Sabra10G0129300 Salix brachista HOM05D001988 ORTHO05D004985 2.2e-166 590.1 713 45.3
CsaV3_2G009530 Cucumis sativus L. HOM05D001988 ORTHO05D004985 2.5e-165 586.6 608 54.9
Lj8A318G47 Lonicera japonica HOM05D001988 ORTHO05D004985 7.9e-164 581.6 701 47.5
Gohir.A05G183600 Gossypium hirsutum HOM05D001988 ORTHO05D004985 1.0e-163 581.3 718 47.1
vmacro01166 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 2.2e-161 573.5 715 46.3
HanXRQChr05g0145521 Helianthus annuus HOM05D001988 ORTHO05D004985 3.1e-160 569.7 703 45.5
Lsat_1_v5_gn_5_156781 Lactuca sativa HOM05D001988 ORTHO05D004985 9.0e-160 568.2 714 45.8
HanXRQChr09g0255131 Helianthus annuus HOM05D001988 ORTHO05D004985 2.6e-159 566.6 695 45.8
TWI53G0339 Tripterygium wilfordii HOM05D001988 ORTHO05D004985 2.2e-158 563.5 703 47.7
FAN25G3456 Fragaria x ananassa HOM05D001988 ORTHO05D004985 1.9e-157 560.5 678 48.2
Lsat_1_v5_gn_8_100701 Lactuca sativa HOM05D001988 ORTHO05D004985 4.2e-157 559.3 704 45.2
PGSC0003DMG401018705 Solanum tuberosum HOM05D001988 ORTHO05D004985 7.2e-157 558.5 706 46.3
Hund05880 Selenicereus undatus HOM05D001988 ORTHO05D004985 9.4e-157 558.1 738 44.6
Solyc11g071540.2 Solanum lycopersicum HOM05D001988 ORTHO05D004985 3.0e-155 553.1 706 45.5
Cc09_g03970 Coffea canephora HOM05D001988 ORTHO05D004985 3.9e-155 552.7 705 45.5
Peaxi162Scf00217g00713 Petunia axillaris HOM05D001988 ORTHO05D004985 5.1e-155 552.4 706 45.5
AUR62005788 Chenopodium quinoa HOM05D001988 ORTHO05D004985 3.3e-154 549.7 717 44.2
EL10Ac6g13205 Beta vulgaris HOM05D001988 ORTHO05D004985 4.3e-154 549.3 718 44.2
THA.LOC104805159 Tarenaya hassleriana HOM05D001988 ORTHO05D004985 9.7e-154 548.1 713 44.5
Sopen11g029230 Solanum pennellii HOM05D001988 ORTHO05D004985 1.3e-153 547.7 706 45.8
ECA248G0899 Erigeron canadensis HOM05D001988 ORTHO05D004985 6.3e-153 545.4 705 44.3
Nitab4.5_0007649g0010 Nicotiana tabacum HOM05D001988 ORTHO05D004985 2.0e-151 540.4 708 43.2
Nitab4.5_0000428g0180 Nicotiana tabacum HOM05D001988 ORTHO05D004985 1.0e-150 538.1 713 44.0
CAN.G439.30 Capsicum annuum HOM05D001988 ORTHO05D004985 5.5e-149 532.3 699 45.1
EL10Ac9g22126 Beta vulgaris HOM05D001988 ORTHO05D004985 2.1e-148 530.4 762 42.0
MSTRG.27418 Avicennia marina HOM05D001988 ORTHO05D004985 7.9e-148 528.5 724 43.0
SHI13475 Sapria himalayana HOM05D001988 ORTHO05D004985 1.4e-147 527.7 703 43.7
Migut.F02100 Erythranthe guttata HOM05D001988 ORTHO05D004985 2.2e-145 520.4 704 43.9
SalBow1G3615 Salvia bowleyana HOM05D001988 ORTHO05D004985 4.8e-145 519.2 704 44.0
Lsat_1_v5_gn_4_55321 Lactuca sativa HOM05D001988 ORTHO05D004985 8.2e-145 518.5 704 43.5
SGA_v2.0_scaffold58G20462 Striga asiatica HOM05D001988 ORTHO05D004985 1.3e-142 511.1 715 41.1
Ah.05g179340 Amaranthus hybridus HOM05D001988 ORTHO05D004985 3.8e-142 509.6 725 42.2
Sc11g0001930 Simmondsia chinensis HOM05D001988 ORTHO05D004985 1.1e-141 508.1 728 42.6
Aa31LG2G7390 Aethionema arabicum HOM05D001988 ORTHO05D004985 4.0e-139 499.6 712 43.3
Carub.0005s0183 Capsella rubella HOM05D001988 ORTHO05D004985 8.8e-139 498.4 711 44.2
ECA234G0637 Erigeron canadensis HOM05D001988 ORTHO05D004985 2.0e-138 497.3 699 42.8
Sopen09g001990 Solanum pennellii HOM05D001988 ORTHO05D004985 2.2e-137 493.8 710 42.4
Dinv16646 Davidia involucrata HOM05D001988 ORTHO05D004985 6.3e-137 492.3 417 59.5
RcHm_v2.0_Chr7g0220021 Rosa chinensis HOM05D001988 ORTHO05D004985 1.8e-136 490.7 540 50.6
RcHm_v2.0_Chr5g0048641 Rosa chinensis HOM05D001988 ORTHO05D004985 2.0e-135 487.3 537 50.7
Solyc09g007120.4 Solanum lycopersicum HOM05D001988 ORTHO05D004985 1.0e-134 485.0 710 42.5
Aqoxy1G01101 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 1.3e-134 484.6 734 39.5
TAR629G1399 Trochodendron aralioides HOM05D001988 ORTHO05D004985 2.2e-134 483.8 496 54.8
AUR62028773 Chenopodium quinoa HOM05D001988 ORTHO05D004985 6.1e-132 475.7 602 47.0
AL5G12570 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 2.3e-131 473.8 702 41.3
AT2G02955 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 1.7e-129 467.6 706 40.2
Hma1.2p1_0265F.1_g106750 Hydrangea macrophylla HOM05D001988 ORTHO05D004985 4.1e-128 463.0 442 53.4
Thhalv10027666m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 1.6e-127 461.1 708 40.7
DCAR_007151 Daucus carota HOM05D001988 ORTHO05D004985 5.0e-126 456.1 706 40.8
unitig_60.g25620 Utricularia gibba HOM05D001988 ORTHO05D004985 5.5e-125 452.6 695 39.7
C08p52490 Brassica napus HOM05D001988 ORTHO05D004985 2.6e-122 443.7 710 40.1
A09p68050 Brassica napus HOM05D001988 ORTHO05D004985 3.4e-122 443.4 708 39.3
Migut.I00421 Erythranthe guttata HOM05D001988 ORTHO05D004985 1.3e-121 441.4 579 42.3
CDE07G0941 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 1.1e-120 438.3 583 45.1
BraA09t42140Z Brassica rapa HOM05D001988 ORTHO05D004985 1.8e-120 437.6 713 38.4
Sp7g05500 Schrenkiella parvula HOM05D001988 ORTHO05D004985 2.4e-120 437.2 710 38.6
BolC8t52776H Brassica oleracea HOM05D001988 ORTHO05D004985 5.4e-120 436.0 709 38.9
BcaC07g42212 Brassica carinata HOM05D001988 ORTHO05D004985 1.2e-119 434.9 709 39.5
HPP92_021577 Vanilla planifolia HOM05D001988 ORTHO05D004985 1.3e-118 431.4 715 39.3
PSO017G3571 Papaver somniferum HOM05D001988 ORTHO05D004985 4.9e-113 412.9 704 36.6
Oeu037938.2 Olea europaea HOM05D001988 ORTHO05D004985 4.1e-112 409.8 490 49.6
Eucgr.B03444 Eucalyptus grandis HOM05D001988 ORTHO05D004985 1.3e-110 404.8 475 50.3
PSO063G4641 Papaver somniferum HOM05D001988 ORTHO05D004985 8.6e-110 402.1 684 37.4
MBI19_g09828_MAGBIO Magnolia biondii HOM05D001988 ORTHO05D004985 2.5e-109 400.6 517 48.9
AL6G52060 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 8.9e-107 392.1 693 36.7
SEGI_17598 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 5.6e-101 372.9 730 33.2
SEGI_28471 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 1.9e-96 357.8 721 33.1
Zm00001eb284870 Zea mays HOM05D001988 ORTHO05D004985 7.1e-96 355.9 705 34.2
arahy.Tifrunner.gnm1.ann1.N3HM5N Arachis hypogaea HOM05D001988 ORTHO05D004985 4.6e-95 353.2 392 50.5
Carub.0006s3640 Capsella rubella HOM05D001988 ORTHO05D004985 3.9e-94 350.1 572 39.0
AUR62008859 Chenopodium quinoa HOM05D001988 ORTHO05D004985 8.6e-94 349.0 381 48.8
Potri.010G169500 Populus trichocarpa HOM05D001988 ORTHO05D004985 2.6e-90 337.4 398 48.0
CARHR145370 Cardamine hirsuta HOM05D001988 ORTHO05D004985 1.2e-87 328.6 465 41.9
Pp3c9_8400 Physcomitrium patens HOM05D001988 ORTHO05D004985 1.3e-76 292.0 739 31.0
COL.COLO4_23013 Corchorus olitorius HOM05D001988 ORTHO05D004985 1.6e-76 291.6 705 31.3
Thhalv10004418m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 1.4e-75 288.5 352 44.9
Oeu007681.1 Olea europaea HOM05D001988 ORTHO05D004985 1.2e-74 285.4 305 52.1
Atru.chr11.1785 Acer truncatum HOM05D001988 ORTHO05D004985 4.2e-72 276.9 348 47.4
Hund25598 Selenicereus undatus HOM05D001988 ORTHO05D004985 2.1e-68 264.6 549 33.7
Mapoly0075s0087 Marchantia polymorpha HOM05D001988 ORTHO05D004985 1.3e-62 245.4 819 27.1
ATR0782G208 Amborella trichopoda HOM05D001988 ORTHO05D004985 9.0e-59 232.6 396 39.6
PGSC0003DMG400002020 Solanum tuberosum HOM05D001988 ORTHO05D004985 2.5e-56 224.6 166 66.3
AagrBONN_evm.TU.Sc2ySwM_362.1334 Anthoceros agrestis HOM05D001988 ORTHO05D004985 1.8e-54 218.4 615 28.1
Medtr4g071850 Medicago truncatula HOM05D001988 ORTHO05D004985 7.4e-53 213.0 211 53.1
Atru.chr11.1786 Acer truncatum HOM05D001988 ORTHO05D004985 7.4e-45 186.4 144 56.9
Hund25529 Selenicereus undatus HOM05D001988 ORTHO05D004985 1.3e-41 175.6 287 36.2
Aqoxy5G02833 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 1.1e-40 172.6 228 44.3
Actinidia31897 Actinidia chinensis HOM05D001988 ORTHO05D004985 5.5e-40 170.2 252 39.7
AagrBONN_evm.TU.Sc2ySwM_362.1335 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.1e-35 156.0 748 24.1
Aqoxy5G02832 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 1.5e-34 152.1 267 35.6
Peaxi162Scf00342g00711 Petunia axillaris HOM05D001988 ORTHO05D004985 2.2e-33 148.3 484 28.1
RcHm_v2.0_Chr7g0220011 Rosa chinensis HOM05D001988 ORTHO05D004985 4.2e-32 144.1 80 82.5
PSO513G0179 Papaver somniferum HOM05D001988 ORTHO05D004985 7.2e-32 143.3 483 24.6
RcHm_v2.0_Chr5g0048631 Rosa chinensis HOM05D001988 ORTHO05D004985 9.4e-32 142.9 80 81.2
CARHR145380 Cardamine hirsuta HOM05D001988 ORTHO05D004985 1.4e-30 139.0 216 37.5
Aqoxy5G02834 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 9.7e-29 132.9 109 56.0
SMO239G0039 Selaginella moellendorffii HOM05D001988 ORTHO05D004985 2.6e-26 124.8 153 41.8
CARHR212720 Cardamine hirsuta HOM05D001988 ORTHO05D004985 5.2e-22 110.5 327 29.4
AagrBONN_evm.TU.Sc2ySwM_117.2968 Anthoceros agrestis HOM05D001988 ORTHO05D004985 3.7e-20 104.4 214 32.2
AagrBONN_evm.TU.Sc2ySwM_369.75 Anthoceros agrestis HOM05D001988 ORTHO05D004985 2.2e-17 95.1 365 23.3
Peaxi162Scf00342g00712 Petunia axillaris HOM05D001988 ORTHO05D004985 1.5e-16 92.4 174 34.5
Cfa008983 Carpinus fangiana HOM05D001988 ORTHO05D004985 9.4e-16 89.7 134 41.8
CDE06G2098 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 6.8e-14 83.6 294 25.9
AT1G42615 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 2.0e-13 82.0 146 37.0
Nitab4.5_0004699g0020 Nicotiana tabacum HOM05D001988 ORTHO05D004985 3.7e-12 77.8 71 52.1
MCO03G550 Micromonas commoda HOM05D001988 ORTHO05D004985 2.4e-11 75.1 425 20.7
EL10As5g23508 Beta vulgaris HOM05D001988 ORTHO05D004985 1.2e-10 72.8 126 39.7
Os05g0352700 Oryza sativa ssp. japonica HOM05D001988 ORTHO05D004985 1.2e-10 72.8 199 27.6
BcaC06g34029 Brassica carinata HOM05D001988 ORTHO05D004985 2.0e-10 72.0 76 46.1
Atru.chr11.1787 Acer truncatum HOM05D001988 ORTHO05D004985 2.7e-10 71.6 73 47.9
AL7G47160 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 5.9e-10 70.5 94 46.8
BcaC07g42209 Brassica carinata HOM05D001988 ORTHO05D004985 1.6e-07 62.4 153 30.1
CARHR289080 Cardamine hirsuta HOM05D001988 ORTHO05D004985 1.6e-07 62.4 67 56.7
CBR_g30180 Chara braunii HOM05D001988 ORTHO05D004985 6.8e-06 57.0 70 35.7


User provided reference genes

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