Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr11g0062871 Lupinus albus HOM05D006776 ORTHO05D007603 4.4e-261 904.0 442 100.0
Glyma.06G046400 Glycine max HOM05D006776 ORTHO05D007603 5.2e-222 774.2 439 85.2
Glyma.04G045700 Glycine max HOM05D006776 ORTHO05D007603 1.3e-220 769.6 443 84.7
Lj1g0026753 Lotus japonicus HOM05D006776 ORTHO05D007603 1.2e-218 763.1 439 82.7
Ca_15900_v3 Cicer arietinum L. HOM05D006776 ORTHO05D007603 2.5e-216 755.4 442 82.4
Medtr3g103170 Medicago truncatula HOM05D006776 ORTHO05D007603 4.7e-215 751.1 442 81.2
Psat5g038960 Pisum sativum HOM05D006776 ORTHO05D007603 8.1e-215 750.4 444 81.8
TPR.G33723 Trifolium pratense HOM05D006776 ORTHO05D007603 1.1e-214 750.0 442 81.4
VMungo1309G0963 Vigna mungo HOM05D006776 ORTHO05D007603 1.5e-213 746.1 439 81.8
arahy.Tifrunner.gnm1.ann1.YEFH3D Arachis hypogaea HOM05D006776 ORTHO05D007603 6.4e-212 740.7 453 77.9
arahy.Tifrunner.gnm1.ann1.SBJ000 Arachis hypogaea HOM05D006776 ORTHO05D007603 2.7e-210 735.3 450 77.6
Phvul.009G071700 Phaseolus vulgaris HOM05D006776 ORTHO05D007603 5.1e-209 731.1 446 80.3
CANSAT21G2159 Cannabis sativa HOM05D006776 ORTHO05D007603 1.7e-201 706.1 449 76.2
CiPaw.07G175000 Carya illinoinensis HOM05D006776 ORTHO05D007603 1.1e-200 703.4 441 76.4
RcHm_v2.0_Chr6g0309581 Rosa chinensis HOM05D006776 ORTHO05D007603 4.3e-200 701.4 450 75.6
Prupe.1G422900 Prunus persica HOM05D006776 ORTHO05D007603 1.4e-198 696.4 450 75.6
MD15G1070100 Malus domestica HOM05D006776 ORTHO05D007603 9.0e-198 693.7 450 74.0
Manes.05G181900 Manihot esculenta HOM05D006776 ORTHO05D007603 9.0e-198 693.7 453 74.6
Thecc.08G088800 Theobroma cacao HOM05D006776 ORTHO05D007603 7.6e-197 690.6 450 74.2
FAN20G0940 Fragaria x ananassa HOM05D006776 ORTHO05D007603 1.3e-196 689.9 450 74.9
FAN15G0723 Fragaria x ananassa HOM05D006776 ORTHO05D007603 1.7e-196 689.5 450 74.9
FvH4_2g33100 Fragaria vesca HOM05D006776 ORTHO05D007603 2.9e-196 688.7 450 74.7
FAN27G1522 Fragaria x ananassa HOM05D006776 ORTHO05D007603 8.4e-196 687.2 450 74.4
COL.COLO4_28506 Corchorus olitorius HOM05D006776 ORTHO05D007603 1.1e-195 686.8 450 73.1
FAN24G3456 Fragaria x ananassa HOM05D006776 ORTHO05D007603 4.2e-195 684.9 450 74.0
QL12p038088 Quercus lobata HOM05D006776 ORTHO05D007603 1.6e-194 682.9 484 69.0
Dinv39223 Davidia involucrata HOM05D006776 ORTHO05D007603 6.0e-194 681.0 458 71.8
Gohir.D05G213300 Gossypium hirsutum HOM05D006776 ORTHO05D007603 1.3e-193 679.9 450 73.3
Ciclev10001152m.g Citrus clementina HOM05D006776 ORTHO05D007603 1.8e-193 679.5 446 73.3
Atru.chr13.832 Acer truncatum HOM05D006776 ORTHO05D007603 3.0e-193 678.7 438 74.2
CSS0038791 Camellia sinensis var. sinensis HOM05D006776 ORTHO05D007603 4.3e-192 674.9 453 72.0
Cpa.g.sc142.25 Carica papaya HOM05D006776 ORTHO05D007603 7.4e-192 674.1 436 75.2
Gohir.A05G210000 Gossypium hirsutum HOM05D006776 ORTHO05D007603 2.1e-191 672.5 450 72.4
GSVIVG01009344001 Vitis vinifera HOM05D006776 ORTHO05D007603 2.8e-191 672.2 458 72.3
Actinidia08248 Actinidia chinensis HOM05D006776 ORTHO05D007603 8.1e-191 670.6 458 70.1
Potri.014G016100 Populus trichocarpa HOM05D006776 ORTHO05D007603 3.1e-190 668.7 453 71.7
Cfa013778 Carpinus fangiana HOM05D006776 ORTHO05D007603 2.2e-188 662.5 450 72.9
TAR376G1186 Trochodendron aralioides HOM05D006776 ORTHO05D007603 4.9e-188 661.4 456 70.8
CsaV3_2G026140 Cucumis sativus L. HOM05D006776 ORTHO05D007603 2.5e-187 659.1 449 71.0
Cc10_g05780 Coffea canephora HOM05D006776 ORTHO05D007603 2.1e-186 656.0 457 71.1
PSO170G0170 Papaver somniferum HOM05D006776 ORTHO05D007603 6.0e-186 654.4 454 69.4
Rhsim07G0219900 Rhododendron simsii HOM05D006776 ORTHO05D007603 1.0e-185 653.7 458 68.1
MELO3C010806.2 Cucumis melo HOM05D006776 ORTHO05D007603 3.9e-185 651.7 455 70.1
PSO017G0681 Papaver somniferum HOM05D006776 ORTHO05D007603 6.7e-185 651.0 454 69.2
EL10Ac1g02384 Beta vulgaris HOM05D006776 ORTHO05D007603 8.7e-185 650.6 457 68.5
Hma1.2p1_0819F.1_g223710 Hydrangea macrophylla HOM05D006776 ORTHO05D007603 1.1e-184 650.2 429 72.5
Eucgr.F00083 Eucalyptus grandis HOM05D006776 ORTHO05D007603 1.9e-184 649.4 449 69.5
PGR083G0271 Punica granatum HOM05D006776 ORTHO05D007603 2.5e-184 649.0 450 71.1
Hund23872 Selenicereus undatus HOM05D006776 ORTHO05D007603 1.3e-183 646.7 455 68.4
ClCG08G016470 Citrullus lanatus HOM05D006776 ORTHO05D007603 2.1e-183 646.0 439 71.3
Sed0026542 Sechium edule HOM05D006776 ORTHO05D007603 4.8e-183 644.8 434 71.7
Aqoxy5G00870 Aquilegia oxysepala HOM05D006776 ORTHO05D007603 6.2e-183 644.4 454 69.2
ECA232G1156 Erigeron canadensis HOM05D006776 ORTHO05D007603 3.1e-182 642.1 447 69.4
MSTRG.22221 Avicennia marina HOM05D006776 ORTHO05D007603 6.9e-182 641.0 452 67.7
Oeu053611.1 Olea europaea HOM05D006776 ORTHO05D007603 6.9e-182 641.0 457 68.3
TWI56G0429 Tripterygium wilfordii HOM05D006776 ORTHO05D007603 2.2e-180 636.0 444 69.8
PGSC0003DMG400011544 Solanum tuberosum HOM05D006776 ORTHO05D007603 1.1e-179 633.6 454 69.2
Migut.N02781 Erythranthe guttata HOM05D006776 ORTHO05D007603 3.2e-179 632.1 457 66.7
Nn1g04555 Nelumbo nucifera HOM05D006776 ORTHO05D007603 3.2e-179 632.1 457 67.6
DCAR_012816 Daucus carota HOM05D006776 ORTHO05D007603 9.3e-179 630.6 451 67.0
Haze_22436 Corylus avellana HOM05D006776 ORTHO05D007603 1.6e-178 629.8 402 76.1
Nitab4.5_0008551g0030 Nicotiana tabacum HOM05D006776 ORTHO05D007603 2.1e-178 629.4 436 70.4
Gorai.009G219900 Gossypium raimondii HOM05D006776 ORTHO05D007603 4.6e-178 628.2 412 74.5
Nitab4.5_0002314g0100 Nicotiana tabacum HOM05D006776 ORTHO05D007603 4.6e-178 628.2 454 68.5
Lsat_1_v5_gn_4_131640 Lactuca sativa HOM05D006776 ORTHO05D007603 1.0e-177 627.1 458 67.0
SGA_v2.0_scaffold152G36804 Striga asiatica HOM05D006776 ORTHO05D007603 2.3e-177 625.9 509 60.9
Solyc12g088340.2 Solanum lycopersicum HOM05D006776 ORTHO05D007603 1.5e-176 623.2 454 67.8
Sopen12g030330 Solanum pennellii HOM05D006776 ORTHO05D007603 4.3e-176 621.7 454 67.6
Sabra14G0010000 Salix brachista HOM05D006776 ORTHO05D007603 7.4e-176 620.9 453 67.3
HanXRQChr09g0266761 Helianthus annuus HOM05D006776 ORTHO05D007603 2.2e-175 619.4 448 67.0
THA.LOC104814190 Tarenaya hassleriana HOM05D006776 ORTHO05D007603 3.1e-174 615.5 454 67.0
Sp1g24040 Schrenkiella parvula HOM05D006776 ORTHO05D007603 5.3e-174 614.8 450 67.3
AL1G41330 Arabidopsis lyrata HOM05D006776 ORTHO05D007603 6.9e-174 614.4 451 66.3
AT1G27840 Arabidopsis thaliana HOM05D006776 ORTHO05D007603 6.9e-174 614.4 451 67.0
Ah.11g042830 Amaranthus hybridus HOM05D006776 ORTHO05D007603 1.2e-173 613.6 458 64.8
Lj4A758G74 Lonicera japonica HOM05D006776 ORTHO05D007603 4.5e-173 611.7 417 71.5
C05p26470 Brassica napus HOM05D006776 ORTHO05D007603 7.7e-173 610.9 450 67.1
BolC5t31368H Brassica oleracea HOM05D006776 ORTHO05D007603 7.7e-173 610.9 450 67.3
CARHR027300 Cardamine hirsuta HOM05D006776 ORTHO05D007603 3.8e-172 608.6 449 66.4
BcaNung06155 Brassica carinata HOM05D006776 ORTHO05D007603 8.5e-172 607.4 451 67.2
A09p38320 Brassica napus HOM05D006776 ORTHO05D007603 9.4e-171 604.0 450 66.4
BraA09t39342Z Brassica rapa HOM05D006776 ORTHO05D007603 1.8e-169 599.7 451 66.1
Sc15g0005690 Simmondsia chinensis HOM05D006776 ORTHO05D007603 1.8e-169 599.7 410 70.5
unitig_578.g16149 Utricularia gibba HOM05D006776 ORTHO05D007603 7.4e-168 594.3 448 65.0
Duzib116G0586 Durio zibethinus HOM05D006776 ORTHO05D007603 6.3e-167 591.3 382 76.4
CDE04G2973 Ceratophyllum demersum HOM05D006776 ORTHO05D007603 8.2e-167 590.9 453 63.8
HPP92_001976 Vanilla planifolia HOM05D006776 ORTHO05D007603 1.8e-166 589.7 451 63.4
Aa31sc113G60 Aethionema arabicum HOM05D006776 ORTHO05D007603 4.5e-165 585.1 483 62.7
ATR0820G216 Amborella trichopoda HOM05D006776 ORTHO05D007603 7.7e-165 584.3 453 61.4
Peaxi162Scf00160g00527 Petunia axillaris HOM05D006776 ORTHO05D007603 3.8e-164 582.0 433 67.2
BcaNung06153 Brassica carinata HOM05D006776 ORTHO05D007603 1.6e-162 576.6 442 65.8
Thhalv10007615m.g Eutrema salsugineum HOM05D006776 ORTHO05D007603 6.1e-162 574.7 448 65.0
AUR62038776 Chenopodium quinoa HOM05D006776 ORTHO05D007603 2.8e-159 565.8 397 69.0
Hma1.2p1_0819F.1_g223700 Hydrangea macrophylla HOM05D006776 ORTHO05D007603 2.4e-158 562.8 384 71.4
Zm00001eb147340 Zea mays HOM05D006776 ORTHO05D007603 5.0e-156 555.1 446 59.4
vmacro22055 Vaccinium macrocarpon HOM05D006776 ORTHO05D007603 4.5e-141 505.4 372 66.4
MD08G1082700 Malus domestica HOM05D006776 ORTHO05D007603 5.9e-133 478.4 371 65.5
Pp3c22_5850 Physcomitrium patens HOM05D006776 ORTHO05D007603 1.0e-124 451.1 456 49.1
Mapoly0043s0035 Marchantia polymorpha HOM05D006776 ORTHO05D007603 3.9e-124 449.1 446 49.3
BcaC05g26777 Brassica carinata HOM05D006776 ORTHO05D007603 5.0e-124 448.7 455 54.9
AT1G19750 Arabidopsis thaliana HOM05D006776 ORTHO05D007603 1.4e-121 440.7 334 65.3
AagrBONN_evm.TU.Sc2ySwM_228.2971 Anthoceros agrestis HOM05D006776 ORTHO05D007603 1.1e-118 431.0 451 47.7
AUR62037473 Chenopodium quinoa HOM05D006776 ORTHO05D007603 7.0e-118 428.3 287 71.8
SMO203G0215 Selaginella moellendorffii HOM05D006776 ORTHO05D007603 2.3e-116 423.3 444 47.1
Carub.0001s2630 Capsella rubella HOM05D006776 ORTHO05D007603 4.9e-111 405.6 309 65.7
CBR_g4873 Chara braunii HOM05D006776 ORTHO05D007603 4.6e-101 372.5 542 38.6
CDE02G3909 Ceratophyllum demersum HOM05D006776 ORTHO05D007603 3.6e-98 362.8 378 51.1
SMO353G0131 Selaginella moellendorffii HOM05D006776 ORTHO05D007603 2.6e-88 330.1 451 41.7
MD08G1084000 Malus domestica HOM05D006776 ORTHO05D007603 2.1e-85 320.5 241 68.5
SEGI_38356 Sequoiadendron giganteum HOM05D006776 ORTHO05D007603 2.9e-71 273.5 206 60.2
SEGI_36074 Sequoiadendron giganteum HOM05D006776 ORTHO05D007603 2.3e-68 263.8 221 57.5
MCO02G266 Micromonas commoda HOM05D006776 ORTHO05D007603 5.3e-65 252.7 448 33.9
Os02g0307200 Oryza sativa ssp. japonica HOM05D006776 ORTHO05D007603 1.6e-61 241.1 186 60.8
Cre01.g032100 Chlamydomonas reinhardtii HOM05D006776 ORTHO05D007603 2.9e-39 167.2 291 34.7
PRCOL_00002749 Prasinoderma coloniale HOM05D006776 ORTHO05D007603 4.2e-38 163.3 460 27.4
Lsat_1_v5_gn_7_88960 Lactuca sativa HOM05D006776 ORTHO05D007603 2.0e-35 154.5 107 65.4
Cre01.g032139 Chlamydomonas reinhardtii HOM05D006776 ORTHO05D007603 4.5e-16 90.1 124 34.7
HanXRQChr04g0100971 Helianthus annuus HOM05D000464 ORTHO05D006292 9.8e-11 72.4 315 21.6
Lj4A336G6 Lonicera japonica HOM05D005508 ORTHO05D006882 1.8e-09 68.2 206 27.2
SGA_v2.0_scaffold7G04174 Striga asiatica HOM05D000464 ORTHO05D006292 1.2e-08 65.5 322 21.1
Migut.D02035 Erythranthe guttata HOM05D000464 ORTHO05D006292 1.6e-08 65.1 327 21.7
Cc04_g10820 Coffea canephora HOM05D000464 ORTHO05D006292 2.7e-08 64.3 325 21.5
RcHm_v2.0_Chr2g0165901 Rosa chinensis HOM05D005508 ORTHO05D006882 3.5e-08 63.9 206 23.8
Mapoly0020s0147 Marchantia polymorpha HOM05D006665 ORTHO05D008327 5.9e-08 63.2 347 23.1
Lsat_1_v5_gn_4_172421 Lactuca sativa HOM05D005508 ORTHO05D006882 7.8e-08 62.8 216 27.8
MBI10_g14637_MAGBIO Magnolia biondii HOM05D000464 ORTHO05D006292 7.8e-08 62.8 313 20.8
Psat5g117120 Pisum sativum HOM05D000464 ORTHO05D006292 7.8e-08 62.8 322 20.5
PSO063G1093 Papaver somniferum HOM05D000464 ORTHO05D006292 1.3e-07 62.0 323 19.5
ATR0580G338 Amborella trichopoda HOM05D000464 ORTHO05D006292 1.7e-07 61.6 331 24.5
Cfa009142 Carpinus fangiana HOM05D002303 ORTHO05D006504 1.7e-07 61.6 180 25.0
Haze_12176 Corylus avellana HOM05D002303 ORTHO05D006504 1.7e-07 61.6 180 25.0
Dinv34945 Davidia involucrata HOM05D005508 ORTHO05D006882 2.3e-07 61.2 133 32.3
COL.COLO4_04956 Corchorus olitorius HOM05D000464 ORTHO05D006292 3.9e-07 60.5 128 27.3
Solyc02g078970.4 Solanum lycopersicum HOM05D002303 ORTHO05D006504 6.6e-07 59.7 180 25.0
ECA232G0694 Erigeron canadensis HOM05D005508 ORTHO05D006882 8.6e-07 59.3 133 31.6
Peaxi162Scf00527g00063 Petunia axillaris HOM05D002303 ORTHO05D006504 1.1e-06 58.9 180 25.0
CARHR040110 Cardamine hirsuta HOM05D001978 ORTHO05D003036 1.5e-06 58.5 217 25.3
Cpa.g.sc1360.1 Carica papaya HOM05D000464 ORTHO05D000408 1.5e-06 58.5 243 23.5
DCAR_011042 Daucus carota HOM05D005508 ORTHO05D006882 1.5e-06 58.5 133 31.6
Os11g0660300 Oryza sativa ssp. japonica HOM05D005151 ORTHO05D006322 1.5e-06 58.5 142 28.9
SMO361G0390 Selaginella moellendorffii HOM05D002303 ORTHO05D006504 1.9e-06 58.2 178 25.3
FvH4_7g34000 Fragaria vesca HOM05D004758 ORTHO05D006063 3.3e-06 57.4 167 25.1
Nitab4.5_0001170g0230 Nicotiana tabacum HOM05D002303 ORTHO05D006504 3.3e-06 57.4 180 24.4
Nitab4.5_0003676g0010 Nicotiana tabacum HOM05D002303 ORTHO05D006504 3.3e-06 57.4 180 24.4
DCAR_013994 Daucus carota HOM05D000347 ORTHO05D001997 4.3e-06 57.0 171 24.0
TPR.G22908 Trifolium pratense HOM05D000464 ORTHO05D006292 4.3e-06 57.0 321 19.6
AL8G24250 Arabidopsis lyrata HOM05D000464 ORTHO05D006292 5.6e-06 56.6 128 25.0
AT5G50230 Arabidopsis thaliana HOM05D000464 ORTHO05D006292 5.6e-06 56.6 128 25.0
CANSAT21G1832 Cannabis sativa HOM05D004758 ORTHO05D006063 5.6e-06 56.6 167 24.6
Hma1.2p1_1001F.1_g246600 Hydrangea macrophylla HOM05D003769 ORTHO05D004521 5.6e-06 56.6 186 25.3
Hma1.2p1_1001F.1_g246610 Hydrangea macrophylla HOM05D003769 ORTHO05D004521 5.6e-06 56.6 186 25.3
TAR629G1181 Trochodendron aralioides HOM05D000464 ORTHO05D006292 5.6e-06 56.6 128 25.8
CARHR196430 Cardamine hirsuta HOM05D004758 ORTHO05D006063 9.5e-06 55.8 278 23.4
FAN10G3249 Fragaria x ananassa HOM05D004758 ORTHO05D006063 9.5e-06 55.8 167 25.1


User provided reference genes

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