Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr04g0263921 Lupinus albus HOM05D004944 ORTHO05D005989 0.0e+00 1174.1 591 100.0
Lj3g0016020 Lotus japonicus HOM05D004944 ORTHO05D005989 5.6e-272 940.6 596 80.5
Medtr3g022850 Medicago truncatula HOM05D004944 ORTHO05D005989 1.2e-269 932.9 591 79.2
Glyma.11G150100 Glycine max HOM05D004944 ORTHO05D005989 2.7e-266 921.8 591 80.4
VMungo1080G1012 Vigna mungo HOM05D004944 ORTHO05D005989 2.5e-264 915.2 591 78.5
arahy.Tifrunner.gnm1.ann1.YV81B1 Arachis hypogaea HOM05D004944 ORTHO05D005989 1.0e-252 876.7 621 74.1
TPR.G18800 Trifolium pratense HOM05D004944 ORTHO05D005989 1.0e-252 876.7 591 75.1
arahy.Tifrunner.gnm1.ann1.L5CKR4 Arachis hypogaea HOM05D004944 ORTHO05D005989 2.9e-252 875.2 597 76.4
QL04p013327 Quercus lobata HOM05D004944 ORTHO05D005989 4.7e-226 788.1 597 69.0
Atru.chr11.2502 Acer truncatum HOM05D004944 ORTHO05D005989 1.8e-225 786.2 607 68.5
Dinv32057 Davidia involucrata HOM05D004944 ORTHO05D005989 9.8e-224 780.4 606 68.2
GSVIVG01000850001 Vitis vinifera HOM05D004944 ORTHO05D005989 5.9e-221 771.2 605 66.8
Ciclev10030882m.g Citrus clementina HOM05D004944 ORTHO05D005989 1.3e-220 770.0 609 65.4
Hma1.2p1_0184F.1_g081120 Hydrangea macrophylla HOM05D004944 ORTHO05D005989 7.2e-219 764.2 605 65.8
Actinidia06272 Actinidia chinensis HOM05D004944 ORTHO05D005989 1.6e-218 763.1 599 66.4
MD02G1296200 Malus domestica HOM05D004944 ORTHO05D005989 1.4e-217 760.0 603 65.8
Haze_03113 Corylus avellana HOM05D004944 ORTHO05D005989 2.2e-215 752.7 632 63.6
CiPaw.13G010200 Carya illinoinensis HOM05D004944 ORTHO05D005989 1.1e-214 750.4 607 64.6
Sed0005559 Sechium edule HOM05D004944 ORTHO05D005989 7.2e-211 737.6 595 63.9
Prupe.2G028500 Prunus persica HOM05D004944 ORTHO05D005989 1.0e-209 733.8 603 64.5
Potri.003G202300 Populus trichocarpa HOM05D004944 ORTHO05D005989 2.3e-209 732.6 602 64.3
Phvul.005G033000 Phaseolus vulgaris HOM05D004944 ORTHO05D005989 1.2e-208 730.3 591 67.5
CANSAT80G2771 Cannabis sativa HOM05D004944 ORTHO05D005989 1.5e-208 729.9 596 63.3
Cfa010847 Carpinus fangiana HOM05D004944 ORTHO05D005989 2.9e-207 725.7 599 63.9
MELO3C012446.2 Cucumis melo HOM05D004944 ORTHO05D005989 2.9e-207 725.7 593 63.4
Gorai.013G015500 Gossypium raimondii HOM05D004944 ORTHO05D005989 2.9e-207 725.7 591 64.1
Duzib128G1953 Durio zibethinus HOM05D004944 ORTHO05D005989 1.4e-206 723.4 592 63.7
TWI15G1108 Tripterygium wilfordii HOM05D004944 ORTHO05D005989 1.4e-206 723.4 602 64.0
Gohir.D13G014300 Gossypium hirsutum HOM05D004944 ORTHO05D005989 5.9e-205 718.0 591 63.6
RcHm_v2.0_Chr1g0319541 Rosa chinensis HOM05D004944 ORTHO05D005989 8.6e-204 714.1 597 63.1
Sabra03G0149500 Salix brachista HOM05D004944 ORTHO05D005989 2.1e-202 709.5 642 59.7
Cfa010848 Carpinus fangiana HOM05D004944 ORTHO05D005989 1.8e-201 706.4 603 62.0
Thecc.10G005400 Theobroma cacao HOM05D004944 ORTHO05D005989 6.8e-201 704.5 595 62.9
FAN06G2455 Fragaria x ananassa HOM05D004944 ORTHO05D005989 2.6e-200 702.6 601 62.1
TAR636G1724 Trochodendron aralioides HOM05D004944 ORTHO05D005989 3.4e-200 702.2 602 61.8
Eucgr.G03259 Eucalyptus grandis HOM05D004944 ORTHO05D005989 1.7e-199 699.9 603 60.5
FvH4_7g02220 Fragaria vesca HOM05D004944 ORTHO05D005989 2.2e-199 699.5 601 61.7
FAN03G3505 Fragaria x ananassa HOM05D004944 ORTHO05D005989 3.2e-198 695.7 629 60.1
SGA_v2.0_scaffold5G02935 Striga asiatica HOM05D004944 ORTHO05D005989 4.6e-197 691.8 603 60.5
Cc02_g29470 Coffea canephora HOM05D004944 ORTHO05D005989 1.7e-196 689.9 636 57.7
FAN01G0470 Fragaria x ananassa HOM05D004944 ORTHO05D005989 6.6e-196 688.0 659 57.4
Migut.N01817 Erythranthe guttata HOM05D004944 ORTHO05D005989 9.5e-195 684.1 625 57.8
THA.LOC104819120 Tarenaya hassleriana HOM05D004944 ORTHO05D005989 1.4e-193 680.2 599 58.9
HanXRQChr05g0145061 Helianthus annuus HOM05D004944 ORTHO05D005989 3.1e-193 679.1 599 59.9
Sopen01g030310 Solanum pennellii HOM05D004944 ORTHO05D005989 6.4e-191 671.4 620 57.6
Nitab4.5_0006307g0060 Nicotiana tabacum HOM05D004944 ORTHO05D005989 1.0e-188 664.1 607 57.8
Lsat_1_v5_gn_9_47141 Lactuca sativa HOM05D004944 ORTHO05D005989 2.5e-187 659.4 586 60.2
ECA232G0518 Erigeron canadensis HOM05D004944 ORTHO05D005989 3.3e-187 659.1 592 60.0
CAN.G410.46 Capsicum annuum HOM05D004944 ORTHO05D005989 4.3e-187 658.7 620 57.1
PGR031G0610 Punica granatum HOM05D004944 ORTHO05D005989 4.0e-185 652.1 598 60.4
COL.COLO4_25841 Corchorus olitorius HOM05D004944 ORTHO05D005989 5.8e-184 648.3 557 61.9
ClCG05G020810 Citrullus lanatus HOM05D004944 ORTHO05D005989 2.9e-183 646.0 622 57.6
A09p26720 Brassica napus HOM05D004944 ORTHO05D005989 8.4e-183 644.4 600 59.3
BraA09t38244Z Brassica rapa HOM05D004944 ORTHO05D005989 3.2e-182 642.5 600 59.2
Rhsim07G0062200 Rhododendron simsii HOM05D004944 ORTHO05D005989 1.0e-180 637.5 770 49.1
BcaC04g21249 Brassica carinata HOM05D004944 ORTHO05D005989 5.1e-180 635.2 600 58.5
C09p33850 Brassica napus HOM05D004944 ORTHO05D005989 5.1e-180 635.2 600 58.5
BolC9t56223H Brassica oleracea HOM05D004944 ORTHO05D005989 5.1e-180 635.2 600 58.5
Nn7g36468 Nelumbo nucifera HOM05D004944 ORTHO05D005989 8.6e-180 634.4 601 58.7
Sp6g04870 Schrenkiella parvula HOM05D004944 ORTHO05D005989 1.9e-179 633.3 600 57.8
SalBow2G1212 Salvia bowleyana HOM05D004944 ORTHO05D005989 7.3e-179 631.3 674 53.6
AT4G30870 Arabidopsis thaliana HOM05D004944 ORTHO05D005989 2.8e-178 629.4 601 57.9
Aqoxy1G00293 Aquilegia oxysepala HOM05D004944 ORTHO05D005989 8.1e-178 627.9 604 55.6
BcaB01g01761 Brassica carinata HOM05D004944 ORTHO05D005989 1.1e-177 627.5 596 58.2
Nitab4.5_0000316g0180 Nicotiana tabacum HOM05D004944 ORTHO05D005989 4.0e-177 625.5 595 56.5
AL7G21230 Arabidopsis lyrata HOM05D004944 ORTHO05D005989 6.8e-177 624.8 605 57.4
Thhalv10024629m.g Eutrema salsugineum HOM05D004944 ORTHO05D005989 1.3e-175 620.5 602 58.0
Carub.0007s0968 Capsella rubella HOM05D004944 ORTHO05D005989 1.2e-173 614.0 605 56.4
MD07G1077800 Malus domestica HOM05D004944 ORTHO05D005989 1.2e-173 614.0 590 57.1
Aa31LG2G19510 Aethionema arabicum HOM05D004944 ORTHO05D005989 1.1e-171 607.4 607 56.0
AUR62026814 Chenopodium quinoa HOM05D004944 ORTHO05D005989 6.2e-170 601.7 587 54.3
CARHR238770 Cardamine hirsuta HOM05D004944 ORTHO05D005989 3.1e-169 599.4 599 56.3
Cpa.g.sc197.13 Carica papaya HOM05D004944 ORTHO05D005989 2.2e-167 593.2 593 54.6
DCAR_009210 Daucus carota HOM05D004944 ORTHO05D005989 5.1e-164 582.0 598 54.5
Psat5g213680 Pisum sativum HOM05D004944 ORTHO05D005989 2.1e-157 560.1 378 75.4
PSO782G0837 Papaver somniferum HOM05D004944 ORTHO05D005989 3.9e-156 555.8 600 53.5
RcHm_v2.0_Chr3g0488831 Rosa chinensis HOM05D004944 ORTHO05D005989 5.1e-156 555.4 571 55.2
MBI17_g24522_MAGBIO Magnolia biondii HOM05D004944 ORTHO05D005989 6.7e-156 555.1 534 57.7
Hund15708 Selenicereus undatus HOM05D004944 ORTHO05D005989 1.6e-154 550.4 589 52.1
Manes.04G164000 Manihot esculenta HOM05D004944 ORTHO05D005989 1.2e-152 544.3 453 64.9
PSO339G0509 Papaver somniferum HOM05D004944 ORTHO05D005989 2.5e-150 536.6 593 50.8
PSO384G2132 Papaver somniferum HOM05D004944 ORTHO05D005989 2.7e-149 533.1 593 50.3
Carub.0007s3598 Capsella rubella HOM05D004944 ORTHO05D005989 1.4e-145 520.8 592 51.9
Prupe.7G020900 Prunus persica HOM05D004944 ORTHO05D005989 4.1e-145 519.2 586 51.5
PSO135G0630 Papaver somniferum HOM05D004944 ORTHO05D005989 6.9e-145 518.5 598 49.3
EL10Ac2g02867 Beta vulgaris HOM05D004944 ORTHO05D005989 1.3e-143 514.2 584 51.7
HPP92_001459 Vanilla planifolia HOM05D004944 ORTHO05D005989 3.2e-142 509.6 599 49.4
Thhalv10024809m.g Eutrema salsugineum HOM05D004944 ORTHO05D005989 8.7e-140 501.5 591 50.6
CDE01G0132 Ceratophyllum demersum HOM05D004944 ORTHO05D005989 2.5e-139 500.0 561 50.6
AUR62037239 Chenopodium quinoa HOM05D004944 ORTHO05D005989 7.4e-139 498.4 585 49.2
SEGI_11905 Sequoiadendron giganteum HOM05D004944 ORTHO05D005989 1.0e-135 488.0 602 45.8
CsaV3_5G036480 Cucumis sativus L. HOM05D004944 ORTHO05D005989 2.3e-132 476.9 423 60.0
Gohir.A13G013200 Gossypium hirsutum HOM05D004944 ORTHO05D005989 8.8e-132 474.9 423 59.8
Solyc01g068340.3 Solanum lycopersicum HOM05D004944 ORTHO05D005989 1.5e-118 431.0 450 53.3
Pp3c16_12330 Physcomitrium patens HOM05D004944 ORTHO05D005989 7.7e-112 408.7 617 41.5
AT5G39770 Arabidopsis thaliana HOM05D004944 ORTHO05D005989 2.1e-109 400.6 598 44.5
Ca_04546_v3 Cicer arietinum L. HOM05D004944 ORTHO05D005989 1.0e-108 398.3 298 70.5
SMO337G0105 Selaginella moellendorffii HOM05D004944 ORTHO05D005989 4.5e-104 382.9 601 39.3
Mapoly0005s0161 Marchantia polymorpha HOM05D004944 ORTHO05D005989 2.2e-103 380.6 604 37.9
AagrBONN_evm.TU.Sc2ySwM_228.3522 Anthoceros agrestis HOM05D004944 ORTHO05D005989 4.7e-101 372.9 600 38.3
unitig_744.g24021 Utricularia gibba HOM05D004944 ORTHO05D005989 4.5e-96 356.3 684 37.6
Os01g0948100 Oryza sativa ssp. japonica HOM05D004944 ORTHO05D005989 4.0e-92 343.2 498 43.0
MBI17_g33308_MAGBIO Magnolia biondii HOM05D004944 ORTHO05D005989 7.5e-91 339.0 264 66.3
Sc10g0004240 Simmondsia chinensis HOM05D004944 ORTHO05D005989 1.0e-87 328.6 228 71.1
Sc10g0004230 Simmondsia chinensis HOM05D004944 ORTHO05D005989 1.8e-84 317.8 388 49.0
Zm00001eb141350 Zea mays HOM05D004944 ORTHO05D005989 3.9e-79 300.1 286 55.6
Zm00001eb141330 Zea mays HOM05D004944 ORTHO05D005989 2.8e-69 267.3 453 39.3
Lj9A645G78 Lonicera japonica HOM05D004944 ORTHO05D005989 1.8e-68 264.6 308 52.3
CBR_g44528 Chara braunii HOM05D004944 ORTHO05D005989 2.9e-66 257.3 804 27.7
Peaxi162Scf00309g00015 Petunia axillaris HOM05D004944 ORTHO05D005989 9.2e-65 252.3 490 36.9
Solyc01g068350.3 Solanum lycopersicum HOM05D004944 ORTHO05D005989 1.1e-62 245.4 171 69.6
FAN10G4268 Fragaria x ananassa HOM05D004944 ORTHO05D005989 8.9e-60 235.7 160 76.2
vmacro13722 Vaccinium macrocarpon HOM05D004944 ORTHO05D005989 1.2e-59 235.3 393 40.5
ATR0721G036 Amborella trichopoda HOM05D004944 ORTHO05D005989 9.3e-57 225.7 167 66.5
Peaxi162Scf00309g00016 Petunia axillaris HOM05D004944 ORTHO05D005989 6.0e-56 223.0 164 67.7
CSS0031841 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 2.3e-55 221.1 173 65.9
vmacro13724 Vaccinium macrocarpon HOM05D004944 ORTHO05D005989 2.8e-53 214.2 135 78.5
CSS0047173 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 7.6e-51 206.1 146 71.2
Lj9C645T11 Lonicera japonica HOM05D004944 ORTHO05D005989 3.8e-50 203.8 166 63.9
ATR0721G017 Amborella trichopoda HOM05D004944 ORTHO05D005989 1.3e-47 195.3 340 39.4
AUR62002442 Chenopodium quinoa HOM05D004944 ORTHO05D005989 2.3e-47 194.5 174 56.3
Prupe.2G032400 Prunus persica HOM05D004944 ORTHO05D005989 3.6e-45 187.2 176 59.1
BcaNung04417 Brassica carinata HOM05D000343 ORTHO05D003187 1.4e-41 175.3 159 57.2
HPP92_001442 Vanilla planifolia HOM05D004944 ORTHO05D005989 6.7e-39 166.4 143 57.3
vmacro13723 Vaccinium macrocarpon HOM05D004944 ORTHO05D005989 1.8e-36 158.3 105 68.6
CSS0009317 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 1.3e-34 152.1 146 55.5
MCO01G407 Micromonas commoda HOM05D004944 ORTHO05D005989 1.7e-34 151.8 670 27.3
SHI03969 Sapria himalayana HOM05D004944 ORTHO05D005989 1.1e-33 149.1 161 50.9
Sp5g22360 Schrenkiella parvula HOM05D004944 ORTHO05D005989 3.2e-33 147.5 120 63.3
PRCOL_00004679 Prasinoderma coloniale HOM05D004944 ORTHO05D005989 1.6e-32 145.2 344 32.3
Prupe.2G099800 Prunus persica HOM05D004944 ORTHO05D005989 1.9e-30 138.3 275 34.9
Haze_26725 Corylus avellana HOM05D004944 ORTHO05D005989 5.0e-26 123.6 251 31.5
Oeu006103.1 Olea europaea HOM05D004944 ORTHO05D005989 1.6e-24 118.6 144 45.8
FAN01G1245 Fragaria x ananassa HOM05D004944 ORTHO05D005989 2.1e-24 118.2 79 79.7
CSS0024385 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 2.3e-23 114.8 91 65.9
Cre12.g555050 Chlamydomonas reinhardtii HOM05D004944 ORTHO05D005989 6.9e-20 103.2 175 40.0
SHI03974 Sapria himalayana HOM05D004944 ORTHO05D005989 7.7e-19 99.8 154 40.9
Lj9A645G79 Lonicera japonica HOM05D004944 ORTHO05D005989 1.7e-18 98.6 55 81.8
SHI03976 Sapria himalayana HOM05D004944 ORTHO05D005989 1.6e-16 92.0 55 72.7
Peaxi162Scf00309g00011 Petunia axillaris HOM05D004944 ORTHO05D005989 2.1e-16 91.7 53 77.4
Lj9A645G77 Lonicera japonica HOM05D004944 ORTHO05D005989 4.5e-11 73.9 51 72.5
Psat5g213600 Pisum sativum HOM05D004944 ORTHO05D005989 1.4e-07 62.4 78 50.0
Sp5g22380 Schrenkiella parvula HOM05D004944 ORTHO05D005989 3.0e-07 61.2 50 52.0
RcHm_v2.0_Chr5g0078731 Rosa chinensis HOM05D004944 ORTHO05D005989 3.9e-07 60.8 107 37.4
RcHm_v2.0_Chr2g0114761 Rosa chinensis HOM05D004944 ORTHO05D005989 1.5e-06 58.9 107 36.4
SHI03977 Sapria himalayana HOM05D004944 ORTHO05D005989 2.0e-06 58.5 118 35.6


User provided reference genes

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