Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund23872 Selenicereus undatus HOM05D006776 ORTHO05D007603 3.7e-263 911.0 455 100.0
EL10Ac1g02384 Beta vulgaris HOM05D006776 ORTHO05D007603 4.0e-217 758.1 458 81.4
Ah.11g042830 Amaranthus hybridus HOM05D006776 ORTHO05D007603 8.9e-201 703.7 457 75.9
GSVIVG01009344001 Vitis vinifera HOM05D006776 ORTHO05D007603 2.0e-200 702.6 459 74.7
Dinv39223 Davidia involucrata HOM05D006776 ORTHO05D007603 2.9e-199 698.7 459 73.9
RcHm_v2.0_Chr6g0309581 Rosa chinensis HOM05D006776 ORTHO05D007603 1.1e-198 696.8 458 75.5
Actinidia08248 Actinidia chinensis HOM05D006776 ORTHO05D007603 1.4e-198 696.4 459 74.5
Manes.05G181900 Manihot esculenta HOM05D006776 ORTHO05D007603 7.8e-197 690.6 458 74.5
CANSAT21G2159 Cannabis sativa HOM05D006776 ORTHO05D007603 3.9e-196 688.3 457 74.0
FAN24G3456 Fragaria x ananassa HOM05D006776 ORTHO05D007603 3.9e-196 688.3 458 74.9
FvH4_2g33100 Fragaria vesca HOM05D006776 ORTHO05D007603 5.1e-196 688.0 458 74.9
CSS0038791 Camellia sinensis var. sinensis HOM05D006776 ORTHO05D007603 1.1e-195 686.8 459 73.6
FAN15G0723 Fragaria x ananassa HOM05D006776 ORTHO05D007603 1.9e-195 686.0 458 74.2
CiPaw.07G175000 Carya illinoinensis HOM05D006776 ORTHO05D007603 2.5e-195 685.6 457 74.4
FAN20G0940 Fragaria x ananassa HOM05D006776 ORTHO05D007603 2.1e-194 682.6 458 74.0
FAN27G1522 Fragaria x ananassa HOM05D006776 ORTHO05D007603 1.4e-193 679.9 458 73.8
Gohir.A05G210000 Gossypium hirsutum HOM05D006776 ORTHO05D007603 1.4e-193 679.9 459 73.6
Thecc.08G088800 Theobroma cacao HOM05D006776 ORTHO05D007603 2.4e-193 679.1 459 73.4
TAR376G1186 Trochodendron aralioides HOM05D006776 ORTHO05D007603 4.0e-193 678.3 457 72.9
Gohir.D05G213300 Gossypium hirsutum HOM05D006776 ORTHO05D007603 5.2e-193 677.9 459 73.6
Rhsim07G0219900 Rhododendron simsii HOM05D006776 ORTHO05D007603 9.0e-193 677.2 459 72.5
MD15G1070100 Malus domestica HOM05D006776 ORTHO05D007603 2.6e-192 675.6 458 72.9
Prupe.1G422900 Prunus persica HOM05D006776 ORTHO05D007603 2.6e-192 675.6 458 73.1
arahy.Tifrunner.gnm1.ann1.YEFH3D Arachis hypogaea HOM05D006776 ORTHO05D007603 1.7e-191 672.9 458 71.6
COL.COLO4_28506 Corchorus olitorius HOM05D006776 ORTHO05D007603 8.4e-191 670.6 459 71.2
Cc10_g05780 Coffea canephora HOM05D006776 ORTHO05D007603 3.2e-190 668.7 458 73.1
Atru.chr13.832 Acer truncatum HOM05D006776 ORTHO05D007603 4.2e-190 668.3 437 73.9
arahy.Tifrunner.gnm1.ann1.SBJ000 Arachis hypogaea HOM05D006776 ORTHO05D007603 9.3e-190 667.2 455 71.2
Ciclev10001152m.g Citrus clementina HOM05D006776 ORTHO05D007603 7.8e-189 664.1 457 71.3
MSTRG.22221 Avicennia marina HOM05D006776 ORTHO05D007603 2.3e-188 662.5 457 72.4
Potri.014G016100 Populus trichocarpa HOM05D006776 ORTHO05D007603 3.0e-188 662.1 460 71.3
Sc15g0005690 Simmondsia chinensis HOM05D006776 ORTHO05D007603 1.3e-186 656.8 409 79.0
ECA232G1156 Erigeron canadensis HOM05D006776 ORTHO05D007603 2.8e-186 655.6 457 71.3
Aqoxy5G00870 Aquilegia oxysepala HOM05D006776 ORTHO05D007603 1.1e-185 653.7 456 70.6
QL12p038088 Quercus lobata HOM05D006776 ORTHO05D007603 1.1e-185 653.7 494 67.2
Cfa013778 Carpinus fangiana HOM05D006776 ORTHO05D007603 3.1e-185 652.1 458 71.6
Nn1g04555 Nelumbo nucifera HOM05D006776 ORTHO05D007603 1.2e-184 650.2 459 69.9
Hma1.2p1_0819F.1_g223710 Hydrangea macrophylla HOM05D006776 ORTHO05D007603 2.0e-184 649.4 437 72.5
PGSC0003DMG400011544 Solanum tuberosum HOM05D006776 ORTHO05D007603 2.0e-184 649.4 458 70.3
Lsat_1_v5_gn_4_131640 Lactuca sativa HOM05D006776 ORTHO05D007603 2.6e-184 649.0 458 71.2
PGR083G0271 Punica granatum HOM05D006776 ORTHO05D007603 2.6e-184 649.0 457 70.7
Cpa.g.sc142.25 Carica papaya HOM05D006776 ORTHO05D007603 5.8e-184 647.9 437 71.2
Nitab4.5_0002314g0100 Nicotiana tabacum HOM05D006776 ORTHO05D007603 7.6e-184 647.5 458 70.5
CsaV3_2G026140 Cucumis sativus L. HOM05D006776 ORTHO05D007603 9.9e-184 647.1 457 70.9
Oeu053611.1 Olea europaea HOM05D006776 ORTHO05D007603 1.3e-183 646.7 459 69.5
Migut.N02781 Erythranthe guttata HOM05D006776 ORTHO05D007603 8.4e-183 644.0 459 71.0
Medtr3g103170 Medicago truncatula HOM05D006776 ORTHO05D007603 5.4e-182 641.3 456 69.5
Lalb_Chr11g0062871 Lupinus albus HOM05D006776 ORTHO05D007603 7.1e-182 641.0 455 68.4
Sed0026542 Sechium edule HOM05D006776 ORTHO05D007603 2.7e-181 639.0 441 71.4
Solyc12g088340.2 Solanum lycopersicum HOM05D006776 ORTHO05D007603 2.7e-181 639.0 458 69.4
Lj1g0026753 Lotus japonicus HOM05D006776 ORTHO05D007603 3.5e-181 638.6 457 69.1
HanXRQChr09g0266761 Helianthus annuus HOM05D006776 ORTHO05D007603 4.6e-181 638.3 458 70.3
Nitab4.5_0008551g0030 Nicotiana tabacum HOM05D006776 ORTHO05D007603 6.0e-181 637.9 438 71.7
Sopen12g030330 Solanum pennellii HOM05D006776 ORTHO05D007603 7.9e-181 637.5 458 69.2
Sabra14G0010000 Salix brachista HOM05D006776 ORTHO05D007603 1.3e-180 636.7 461 69.8
MELO3C010806.2 Cucumis melo HOM05D006776 ORTHO05D007603 8.7e-180 634.0 463 69.3
Phvul.009G071700 Phaseolus vulgaris HOM05D006776 ORTHO05D007603 1.9e-179 632.9 459 67.8
SGA_v2.0_scaffold152G36804 Striga asiatica HOM05D006776 ORTHO05D007603 2.5e-179 632.5 516 64.5
Lj4A758G74 Lonicera japonica HOM05D006776 ORTHO05D007603 3.3e-179 632.1 418 74.2
TPR.G33723 Trifolium pratense HOM05D006776 ORTHO05D007603 3.3e-179 632.1 455 68.4
Glyma.04G045700 Glycine max HOM05D006776 ORTHO05D007603 5.6e-179 631.3 461 68.8
Glyma.06G046400 Glycine max HOM05D006776 ORTHO05D007603 5.6e-179 631.3 456 67.8
ClCG08G016470 Citrullus lanatus HOM05D006776 ORTHO05D007603 1.3e-178 630.2 440 70.0
Psat5g038960 Pisum sativum HOM05D006776 ORTHO05D007603 2.1e-178 629.4 457 67.8
Ca_15900_v3 Cicer arietinum L. HOM05D006776 ORTHO05D007603 3.7e-178 628.6 455 69.0
Haze_22436 Corylus avellana HOM05D006776 ORTHO05D007603 1.1e-177 627.1 409 76.3
VMungo1309G0963 Vigna mungo HOM05D006776 ORTHO05D007603 1.8e-177 626.3 457 67.6
Gorai.009G219900 Gossypium raimondii HOM05D006776 ORTHO05D007603 2.4e-177 625.9 415 74.7
PSO170G0170 Papaver somniferum HOM05D006776 ORTHO05D007603 6.9e-177 624.4 459 67.1
Eucgr.F00083 Eucalyptus grandis HOM05D006776 ORTHO05D007603 2.6e-176 622.5 458 69.7
AUR62038776 Chenopodium quinoa HOM05D006776 ORTHO05D007603 3.4e-176 622.1 406 75.9
PSO017G0681 Papaver somniferum HOM05D006776 ORTHO05D007603 3.4e-176 622.1 459 66.9
THA.LOC104814190 Tarenaya hassleriana HOM05D006776 ORTHO05D007603 1.3e-175 620.2 460 67.2
DCAR_012816 Daucus carota HOM05D006776 ORTHO05D007603 9.3e-174 614.0 458 66.6
AT1G27840 Arabidopsis thaliana HOM05D006776 ORTHO05D007603 1.8e-172 609.8 460 66.3
TWI56G0429 Tripterygium wilfordii HOM05D006776 ORTHO05D007603 5.1e-172 608.2 456 67.5
CDE04G2973 Ceratophyllum demersum HOM05D006776 ORTHO05D007603 4.3e-171 605.1 460 66.7
ATR0820G216 Amborella trichopoda HOM05D006776 ORTHO05D007603 7.4e-171 604.4 456 64.3
HPP92_001976 Vanilla planifolia HOM05D006776 ORTHO05D007603 1.3e-170 603.6 458 64.6
Peaxi162Scf00160g00527 Petunia axillaris HOM05D006776 ORTHO05D007603 2.1e-170 602.8 439 71.1
AL1G41330 Arabidopsis lyrata HOM05D006776 ORTHO05D007603 3.7e-170 602.1 459 65.8
BcaNung06155 Brassica carinata HOM05D006776 ORTHO05D007603 9.0e-169 597.4 459 66.2
CARHR027300 Cardamine hirsuta HOM05D006776 ORTHO05D007603 1.2e-168 597.0 464 65.1
C05p26470 Brassica napus HOM05D006776 ORTHO05D007603 1.3e-167 593.6 458 65.7
BolC5t31368H Brassica oleracea HOM05D006776 ORTHO05D007603 1.7e-167 593.2 458 65.7
Sp1g24040 Schrenkiella parvula HOM05D006776 ORTHO05D007603 1.7e-167 593.2 456 65.8
unitig_578.g16149 Utricularia gibba HOM05D006776 ORTHO05D007603 2.9e-167 592.4 458 64.2
A09p38320 Brassica napus HOM05D006776 ORTHO05D007603 1.4e-166 590.1 458 65.1
BraA09t39342Z Brassica rapa HOM05D006776 ORTHO05D007603 1.2e-165 587.0 459 65.1
Zm00001eb147340 Zea mays HOM05D006776 ORTHO05D007603 1.6e-162 576.6 456 63.2
Duzib116G0586 Durio zibethinus HOM05D006776 ORTHO05D007603 2.2e-162 576.2 385 75.1
Hma1.2p1_0819F.1_g223700 Hydrangea macrophylla HOM05D006776 ORTHO05D007603 1.4e-161 573.5 385 74.0
Aa31sc113G60 Aethionema arabicum HOM05D006776 ORTHO05D007603 1.2e-160 570.5 489 61.6
BcaNung06153 Brassica carinata HOM05D006776 ORTHO05D007603 2.5e-158 562.8 456 63.2
Thhalv10007615m.g Eutrema salsugineum HOM05D006776 ORTHO05D007603 3.0e-156 555.8 414 67.6
vmacro22055 Vaccinium macrocarpon HOM05D006776 ORTHO05D007603 1.2e-144 517.3 372 68.5
AUR62037473 Chenopodium quinoa HOM05D006776 ORTHO05D007603 2.4e-129 466.5 297 77.4
Pp3c22_5850 Physcomitrium patens HOM05D006776 ORTHO05D007603 5.3e-129 465.3 458 50.4
MD08G1082700 Malus domestica HOM05D006776 ORTHO05D007603 2.9e-127 459.5 372 64.5
Mapoly0043s0035 Marchantia polymorpha HOM05D006776 ORTHO05D007603 5.0e-127 458.8 468 51.5
BcaC05g26777 Brassica carinata HOM05D006776 ORTHO05D007603 1.0e-119 434.5 463 53.6
AT1G19750 Arabidopsis thaliana HOM05D006776 ORTHO05D007603 3.3e-118 429.5 342 62.6
AagrBONN_evm.TU.Sc2ySwM_228.2971 Anthoceros agrestis HOM05D006776 ORTHO05D007603 1.2e-117 427.6 455 49.5
SMO203G0215 Selaginella moellendorffii HOM05D006776 ORTHO05D007603 1.2e-115 421.0 456 47.4
Carub.0001s2630 Capsella rubella HOM05D006776 ORTHO05D007603 2.4e-105 386.7 313 61.7
CDE02G3909 Ceratophyllum demersum HOM05D006776 ORTHO05D007603 2.5e-102 376.7 386 52.6
CBR_g4873 Chara braunii HOM05D006776 ORTHO05D007603 4.7e-101 372.5 513 42.5
SMO353G0131 Selaginella moellendorffii HOM05D006776 ORTHO05D007603 5.4e-89 332.4 463 40.6
MD08G1084000 Malus domestica HOM05D006776 ORTHO05D007603 1.0e-79 301.6 251 65.3
SEGI_38356 Sequoiadendron giganteum HOM05D006776 ORTHO05D007603 2.6e-75 287.0 207 66.2
SEGI_36074 Sequoiadendron giganteum HOM05D006776 ORTHO05D007603 1.6e-69 267.7 222 57.7
Os02g0307200 Oryza sativa ssp. japonica HOM05D006776 ORTHO05D007603 6.2e-69 265.8 190 67.9
MCO02G266 Micromonas commoda HOM05D006776 ORTHO05D007603 3.2e-65 253.4 440 35.0
Cre01.g032100 Chlamydomonas reinhardtii HOM05D006776 ORTHO05D007603 9.4e-41 172.2 293 36.5
PRCOL_00002749 Prasinoderma coloniale HOM05D006776 ORTHO05D007603 1.0e-39 168.7 462 29.0
Lsat_1_v5_gn_7_88960 Lactuca sativa HOM05D006776 ORTHO05D007603 1.7e-37 161.4 107 73.8
Cre01.g032139 Chlamydomonas reinhardtii HOM05D006776 ORTHO05D007603 9.1e-20 102.4 123 41.5
HanXRQChr04g0100971 Helianthus annuus HOM05D000464 ORTHO05D006292 1.1e-09 68.9 325 22.5
COL.COLO4_04956 Corchorus olitorius HOM05D000464 ORTHO05D006292 4.7e-08 63.5 179 27.9
CDE02G0751 Ceratophyllum demersum HOM05D006183 ORTHO05D007844 6.1e-08 63.2 360 23.3
SEGI_38227 Sequoiadendron giganteum HOM05D005508 ORTHO05D006882 8.0e-08 62.8 196 29.1
MELO3C026239.2 Cucumis melo HOM05D000464 ORTHO05D006292 1.8e-07 61.6 179 26.8
CsaV3_1G000870 Cucumis sativus L. HOM05D000464 ORTHO05D006292 1.8e-07 61.6 179 26.8
Dinv26878 Davidia involucrata HOM05D002634 ORTHO05D003100 1.8e-07 61.6 216 25.9
Cc04_g10820 Coffea canephora HOM05D000464 ORTHO05D006292 2.3e-07 61.2 159 29.6
MBI10_g14637_MAGBIO Magnolia biondii HOM05D000464 ORTHO05D006292 4.0e-07 60.5 133 25.6
Os10g0464100 Oryza sativa ssp. japonica HOM05D006183 ORTHO05D007844 5.2e-07 60.1 276 23.9
AL8G24250 Arabidopsis lyrata HOM05D000464 ORTHO05D006292 6.8e-07 59.7 117 25.6
AT5G50230 Arabidopsis thaliana HOM05D000464 ORTHO05D006292 6.8e-07 59.7 117 25.6
SEGI_08945 Sequoiadendron giganteum HOM05D006776 ORTHO05D386339 8.8e-07 59.3 44 63.6
HPP92_025390 Vanilla planifolia HOM05D006183 ORTHO05D007844 8.8e-07 59.3 259 22.0
Atru.chr9.806 Acer truncatum HOM05D003769 ORTHO05D004521 1.2e-06 58.9 214 23.8
Medtr3g075400 Medicago truncatula HOM05D000464 ORTHO05D006292 1.2e-06 58.9 129 25.6
Thhalv10013321m.g Eutrema salsugineum HOM05D000464 ORTHO05D006292 1.5e-06 58.5 117 26.5
Os11g0660300 Oryza sativa ssp. japonica HOM05D005151 ORTHO05D006322 1.5e-06 58.5 141 27.7
Migut.D02035 Erythranthe guttata HOM05D000464 ORTHO05D006292 2.0e-06 58.2 325 20.9
Carub.0008s1023 Capsella rubella HOM05D000464 ORTHO05D006292 2.6e-06 57.8 117 24.8
AUR62008815 Chenopodium quinoa HOM05D006183 ORTHO05D007844 2.6e-06 57.8 352 21.9
SMO169G0114 Selaginella moellendorffii HOM05D003753 ORTHO05D005081 2.6e-06 57.8 132 25.0
SEGI_15664 Sequoiadendron giganteum HOM05D003769 ORTHO05D004521 2.6e-06 57.8 122 25.4
BcaB04g17498 Brassica carinata HOM05D003769 ORTHO05D004521 3.4e-06 57.4 214 25.2
Psat5g117120 Pisum sativum HOM05D000464 ORTHO05D006292 4.4e-06 57.0 129 24.8
Aa31LG3G6060 Aethionema arabicum HOM05D000464 ORTHO05D006292 5.7e-06 56.6 117 24.8
ATR0580G338 Amborella trichopoda HOM05D000464 ORTHO05D006292 5.7e-06 56.6 134 32.1
BcaC08g43116 Brassica carinata HOM05D003769 ORTHO05D004521 5.7e-06 56.6 214 23.8
C06p03880 Brassica napus HOM05D003769 ORTHO05D004521 5.7e-06 56.6 214 23.8
BolC6t35520H Brassica oleracea HOM05D003769 ORTHO05D004521 5.7e-06 56.6 214 23.8
Nitab4.5_0000934g0230 Nicotiana tabacum HOM05D002634 ORTHO05D003100 5.7e-06 56.6 189 25.4
SGA_v2.0_scaffold7G04174 Striga asiatica HOM05D000464 ORTHO05D006292 5.7e-06 56.6 322 21.4
Cpa.g.sc1360.1 Carica papaya HOM05D000464 ORTHO05D000408 7.5e-06 56.2 178 25.3
Sp1g35950 Schrenkiella parvula HOM05D003769 ORTHO05D004521 7.5e-06 56.2 214 24.3
Sc17g0002990 Simmondsia chinensis HOM05D006183 ORTHO05D007844 7.5e-06 56.2 267 24.7
TAR629G1181 Trochodendron aralioides HOM05D000464 ORTHO05D006292 7.5e-06 56.2 118 23.7
A06p03980 Brassica napus HOM05D003769 ORTHO05D004521 9.8e-06 55.8 214 23.4


User provided reference genes

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