Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund19236 Selenicereus undatus HOM05D004151 ORTHO05D004775 5.8e-112 407.5 201 100.0
Hund24835 Selenicereus undatus HOM05D004151 ORTHO05D004775 2.0e-43 179.9 122 75.4
Ah.06g191800 Amaranthus hybridus HOM05D004151 ORTHO05D004775 4.4e-43 178.7 104 84.6
Sabra13G0051900 Salix brachista HOM05D004151 ORTHO05D004775 7.5e-43 177.9 104 80.8
Nitab4.5_0007542g0010 Nicotiana tabacum HOM05D004151 ORTHO05D004775 4.9e-42 175.3 97 84.5
Dinv14579 Davidia involucrata HOM05D004151 ORTHO05D004775 8.3e-42 174.5 127 70.1
Manes.08G144000 Manihot esculenta HOM05D004151 ORTHO05D004775 8.3e-42 174.5 95 86.3
Nitab4.5_0009048g0010 Nicotiana tabacum HOM05D004151 ORTHO05D004775 1.4e-41 173.7 122 72.1
Ah.13g075350 Amaranthus hybridus HOM05D004151 ORTHO05D004775 1.9e-41 173.3 97 84.5
CDE06G0359 Ceratophyllum demersum HOM05D004151 ORTHO05D004775 1.9e-41 173.3 97 83.5
SGA_v2.0_scaffold274G46513 Striga asiatica HOM05D004151 ORTHO05D004775 1.9e-41 173.3 97 81.4
MSTRG.19934 Avicennia marina HOM05D004151 ORTHO05D004775 3.2e-41 172.6 101 79.2
Lj1g0021266 Lotus japonicus HOM05D004151 ORTHO05D004775 3.2e-41 172.6 116 75.0
Manes.09G141400 Manihot esculenta HOM05D004151 ORTHO05D004775 3.2e-41 172.6 95 85.3
Nn7g35851 Nelumbo nucifera HOM05D004151 ORTHO05D004775 3.2e-41 172.6 94 88.3
THA.LOC104802867 Tarenaya hassleriana HOM05D004151 ORTHO05D004775 3.2e-41 172.6 97 84.5
CSS0045523 Camellia sinensis var. sinensis HOM05D004151 ORTHO05D004775 7.0e-41 171.4 93 87.1
Cfa016441 Carpinus fangiana HOM05D004151 ORTHO05D004775 7.0e-41 171.4 104 78.8
Gohir.A08G213200 Gossypium hirsutum HOM05D004151 ORTHO05D004775 7.0e-41 171.4 93 86.0
Gorai.004G244500 Gossypium raimondii HOM05D004151 ORTHO05D004775 7.0e-41 171.4 93 86.0
unitig_21.g20195 Utricularia gibba HOM05D004151 ORTHO05D004775 7.0e-41 171.4 105 80.0
Psat0s1971g0280 Pisum sativum HOM05D004151 ORTHO05D004775 9.2e-41 171.0 97 81.4
Thecc.05G294500 Theobroma cacao HOM05D004151 ORTHO05D004775 9.2e-41 171.0 98 84.7
EL10Ac3g06820 Beta vulgaris HOM05D004151 ORTHO05D004775 1.2e-40 170.6 94 88.3
CiPaw.09G001900 Carya illinoinensis HOM05D004151 ORTHO05D004775 1.6e-40 170.2 98 80.6
RcHm_v2.0_Chr3g0490211 Rosa chinensis HOM05D004151 ORTHO05D004775 1.6e-40 170.2 113 77.9
Sc25g0004980 Simmondsia chinensis HOM05D004151 ORTHO05D004775 1.6e-40 170.2 97 84.5
PGSC0003DMG400008366 Solanum tuberosum HOM05D004151 ORTHO05D004775 1.6e-40 170.2 97 82.5
VMungo1383G2477 Vigna mungo HOM05D004151 ORTHO05D004775 1.6e-40 170.2 101 78.2
Peaxi162Scf00003g04832 Petunia axillaris HOM05D004151 ORTHO05D004775 2.1e-40 169.9 106 79.2
Solyc10g078540.3 Solanum lycopersicum HOM05D004151 ORTHO05D004775 2.1e-40 169.9 97 82.5
Sopen10g029190 Solanum pennellii HOM05D004151 ORTHO05D004775 2.1e-40 169.9 97 82.5
AUR62032690 Chenopodium quinoa HOM05D004151 ORTHO05D004775 2.7e-40 169.5 89 89.9
Cc06_g22960 Coffea canephora HOM05D004151 ORTHO05D004775 2.7e-40 169.5 104 80.8
Dinv37014 Davidia involucrata HOM05D004151 ORTHO05D004775 2.7e-40 169.5 97 82.5
FvH4_1g30320 Fragaria vesca HOM05D004151 ORTHO05D004775 2.7e-40 169.5 107 80.4
FAN19G1796 Fragaria x ananassa HOM05D004151 ORTHO05D004775 2.7e-40 169.5 107 80.4
FAN26G2823 Fragaria x ananassa HOM05D004151 ORTHO05D004775 2.7e-40 169.5 107 80.4
Gohir.D08G230300 Gossypium hirsutum HOM05D004151 ORTHO05D004775 2.7e-40 169.5 93 84.9
THA.LOC104827273 Tarenaya hassleriana HOM05D004151 ORTHO05D004775 2.7e-40 169.5 101 82.2
Potri.019G034900 Populus trichocarpa HOM05D004151 ORTHO05D004775 3.5e-40 169.1 95 82.1
TPR.G5895 Trifolium pratense HOM05D004151 ORTHO05D004775 3.5e-40 169.1 97 80.4
COL.COLO4_13597 Corchorus olitorius HOM05D004151 ORTHO05D004775 4.6e-40 168.7 89 87.6
Haze_19418 Corylus avellana HOM05D004151 ORTHO05D004775 4.6e-40 168.7 101 79.2
Haze_19447 Corylus avellana HOM05D004151 ORTHO05D004775 4.6e-40 168.7 101 79.2
Phvul.001G110400 Phaseolus vulgaris HOM05D004151 ORTHO05D004775 4.6e-40 168.7 110 74.5
TWI32G1207 Tripterygium wilfordii HOM05D004151 ORTHO05D004775 4.6e-40 168.7 106 79.2
AT3G03920 Arabidopsis thaliana HOM05D004151 ORTHO05D004775 6.0e-40 168.3 107 75.7
Cpa.g.sc51.114 Carica papaya HOM05D004151 ORTHO05D004775 6.0e-40 168.3 92 83.7
Potri.013G058400 Populus trichocarpa HOM05D004151 ORTHO05D004775 6.0e-40 168.3 96 80.2
TAR369G0512 Trochodendron aralioides HOM05D004151 ORTHO05D004775 6.0e-40 168.3 94 84.0
Sed0025621 Sechium edule HOM05D004151 ORTHO05D004775 1.0e-39 167.5 116 73.3
Zm00001eb114360 Zea mays HOM05D004151 ORTHO05D004775 1.0e-39 167.5 127 69.3
CANSAT78G0749 Cannabis sativa HOM05D004151 ORTHO05D004775 1.3e-39 167.2 120 70.0
FAN23G0170 Fragaria x ananassa HOM05D004151 ORTHO05D004775 1.3e-39 167.2 107 79.4
Lalb_Chr14g0364491 Lupinus albus HOM05D004151 ORTHO05D004775 1.3e-39 167.2 104 78.8
GSVIVG01033401001 Vitis vinifera HOM05D004151 ORTHO05D004775 1.7e-39 166.8 125 69.6
arahy.Tifrunner.gnm1.ann1.JDMG7B Arachis hypogaea HOM05D004151 ORTHO05D004775 2.3e-39 166.4 107 73.8
arahy.Tifrunner.gnm1.ann1.PLSY77 Arachis hypogaea HOM05D004151 ORTHO05D004775 2.3e-39 166.4 107 73.8
ClCG04G005310 Citrullus lanatus HOM05D004151 ORTHO05D004775 2.3e-39 166.4 89 85.4
HanXRQChr07g0204461 Helianthus annuus HOM05D004151 ORTHO05D004775 2.3e-39 166.4 92 84.8
Lalb_Chr22g0359191 Lupinus albus HOM05D004151 ORTHO05D004775 3.0e-39 166.0 104 78.8
Medtr7g085640 Medicago truncatula HOM05D004151 ORTHO05D004775 3.0e-39 166.0 96 80.2
Os11g0579800 Oryza sativa ssp. japonica HOM05D004151 ORTHO05D004775 3.0e-39 166.0 93 81.7
Zm00001eb200450 Zea mays HOM05D004151 ORTHO05D004775 3.0e-39 166.0 93 80.6
FAN28G2413 Fragaria x ananassa HOM05D004151 ORTHO05D004775 3.9e-39 165.6 89 86.5
PGR142G1491 Punica granatum HOM05D004151 ORTHO05D004775 3.9e-39 165.6 89 86.5
CARHR078040 Cardamine hirsuta HOM05D004151 ORTHO05D004775 5.1e-39 165.2 112 72.3
HPP92_021240 Vanilla planifolia HOM05D004151 ORTHO05D004775 5.1e-39 165.2 110 73.6
Aa31LG11G11430 Aethionema arabicum HOM05D004151 ORTHO05D004775 6.6e-39 164.9 116 70.7
Nitab4.5_0004844g0050 Nicotiana tabacum HOM05D004151 ORTHO05D004775 6.6e-39 164.9 91 83.5
CAN.G960.49 Capsicum annuum HOM05D004151 ORTHO05D004775 8.6e-39 164.5 92 83.7
ECA233G5487 Erigeron canadensis HOM05D004151 ORTHO05D004775 8.6e-39 164.5 113 73.5
Thhalv10021561m.g Eutrema salsugineum HOM05D004151 ORTHO05D004775 8.6e-39 164.5 97 77.3
Gohir.D11G310400 Gossypium hirsutum HOM05D004151 ORTHO05D004775 8.6e-39 164.5 93 81.7
Gorai.007G343400 Gossypium raimondii HOM05D004151 ORTHO05D004775 8.6e-39 164.5 93 81.7
Lsat_1_v5_gn_8_24760 Lactuca sativa HOM05D004151 ORTHO05D004775 8.6e-39 164.5 89 86.5
Oeu059999.1 Olea europaea HOM05D004151 ORTHO05D004775 8.6e-39 164.5 117 70.1
Sp6g26140 Schrenkiella parvula HOM05D004151 ORTHO05D004775 8.6e-39 164.5 109 73.4
BcaC03g13582 Brassica carinata HOM05D004151 ORTHO05D004775 1.1e-38 164.1 116 70.7
BolC2t06882H Brassica oleracea HOM05D004151 ORTHO05D004775 1.1e-38 164.1 116 70.7
Duzib106G1401 Durio zibethinus HOM05D004151 ORTHO05D004775 1.1e-38 164.1 98 80.6
Thhalv10014755m.g Eutrema salsugineum HOM05D004151 ORTHO05D004775 1.1e-38 164.1 98 77.6
Sp3g02890 Schrenkiella parvula HOM05D004151 ORTHO05D004775 1.1e-38 164.1 107 73.8
A01p41270 Brassica napus HOM05D004151 ORTHO05D004775 1.5e-38 163.7 110 73.6
BNapus_Darmor_BZH_scaffold_78p00440 Brassica napus HOM05D004151 ORTHO05D004775 1.5e-38 163.7 110 73.6
BraA01t04550Z Brassica rapa HOM05D004151 ORTHO05D004775 1.5e-38 163.7 110 73.6
Migut.J01888 Erythranthe guttata HOM05D004151 ORTHO05D004775 1.5e-38 163.7 97 80.4
Hma1.2p1_0134F.1_g061640 Hydrangea macrophylla HOM05D004151 ORTHO05D004775 1.5e-38 163.7 112 74.1
Sed0023399 Sechium edule HOM05D004151 ORTHO05D004775 1.5e-38 163.7 97 79.4
vmacro09141 Vaccinium macrocarpon HOM05D004151 ORTHO05D004775 1.5e-38 163.7 93 81.7
Actinidia22083 Actinidia chinensis HOM05D004151 ORTHO05D004775 1.9e-38 163.3 89 84.3
SalBow5G4201 Salvia bowleyana HOM05D004151 ORTHO05D004775 1.9e-38 163.3 89 85.4
Aa31LG5G14500 Aethionema arabicum HOM05D004151 ORTHO05D004775 2.5e-38 162.9 125 68.8
C02p09730 Brassica napus HOM05D004151 ORTHO05D004775 2.5e-38 162.9 116 69.8
Carub.0003s0316 Capsella rubella HOM05D004151 ORTHO05D004775 2.5e-38 162.9 97 77.3
Gohir.A11G296500 Gossypium hirsutum HOM05D004151 ORTHO05D004775 2.5e-38 162.9 93 80.6
TWI34G0161 Tripterygium wilfordii HOM05D004151 ORTHO05D004775 2.5e-38 162.9 106 78.3
Lsat_1_v5_gn_8_145841 Lactuca sativa HOM05D004151 ORTHO05D004775 3.3e-38 162.5 106 76.4
Oeu049600.1 Olea europaea HOM05D004151 ORTHO05D004775 3.3e-38 162.5 115 70.4
CARHR194880 Cardamine hirsuta HOM05D004151 ORTHO05D004775 4.3e-38 162.2 113 71.7
MELO3C008801.2 Cucumis melo HOM05D004151 ORTHO05D004775 5.6e-38 161.8 116 70.7
CsaV3_4G013280 Cucumis sativus L. HOM05D004151 ORTHO05D004775 5.6e-38 161.8 116 70.7
Duzib177G0709 Durio zibethinus HOM05D004151 ORTHO05D004775 5.6e-38 161.8 98 80.6
QL07p019530 Quercus lobata HOM05D004151 ORTHO05D004775 5.6e-38 161.8 94 79.8
BcaNung05745 Brassica carinata HOM05D004151 ORTHO05D004775 7.3e-38 161.4 109 72.5
A03p08690 Brassica napus HOM05D004151 ORTHO05D004775 7.3e-38 161.4 113 70.8
MD05G1045500 Malus domestica HOM05D004151 ORTHO05D004775 7.3e-38 161.4 105 76.2
BcaNung05743 Brassica carinata HOM05D004151 ORTHO05D004775 9.5e-38 161.0 110 71.8
BolC1t05799H Brassica oleracea HOM05D004151 ORTHO05D004775 9.5e-38 161.0 109 72.5
Rhsim04G0087500 Rhododendron simsii HOM05D004151 ORTHO05D004775 9.5e-38 161.0 89 84.3
HanXRQChr08g0216931 Helianthus annuus HOM05D004151 ORTHO05D004775 1.2e-37 160.6 129 66.7
PSO063G0165 Papaver somniferum HOM05D004151 ORTHO05D004775 1.2e-37 160.6 104 76.9
BcaB01g05179 Brassica carinata HOM05D004151 ORTHO05D004775 2.1e-37 159.8 107 72.9
C03p10140 Brassica napus HOM05D004151 ORTHO05D004775 2.1e-37 159.8 107 72.9
BolC3t13499H Brassica oleracea HOM05D004151 ORTHO05D004775 2.1e-37 159.8 107 72.9
BraA03t10192Z Brassica rapa HOM05D004151 ORTHO05D004775 2.1e-37 159.8 107 72.9
PSO384G0229 Papaver somniferum HOM05D004151 ORTHO05D004775 2.1e-37 159.8 97 79.4
ATR0697G007 Amborella trichopoda HOM05D004151 ORTHO05D004775 2.8e-37 159.5 88 81.8
AL3G13810 Arabidopsis lyrata HOM05D004151 ORTHO05D004775 2.8e-37 159.5 97 75.3
BraA02t05436Z Brassica rapa HOM05D004151 ORTHO05D004775 3.6e-37 159.1 116 69.8
Ca_08267_v3 Cicer arietinum L. HOM05D004151 ORTHO05D004775 3.6e-37 159.1 89 83.1
Pp3c5_28430 Physcomitrium patens HOM05D004151 ORTHO05D004775 3.6e-37 159.1 104 73.1
Sabra19G0042500 Salix brachista HOM05D004151 ORTHO05D004775 4.7e-37 158.7 89 82.0
Sabra19G0044800 Salix brachista HOM05D004151 ORTHO05D004775 4.7e-37 158.7 89 82.0
SEGI_32651 Sequoiadendron giganteum HOM05D004151 ORTHO05D004775 4.7e-37 158.7 93 74.2
PSO782G4796 Papaver somniferum HOM05D004151 ORTHO05D004775 8.1e-37 157.9 104 76.0
Pp3c25_15020 Physcomitrium patens HOM05D004151 ORTHO05D004775 8.1e-37 157.9 104 72.1
A02p04770 Brassica napus HOM05D004151 ORTHO05D004775 1.4e-36 157.1 110 70.9
Glyma.16G041400 Glycine max HOM05D004151 ORTHO05D004775 1.4e-36 157.1 124 65.3
PSO339G5713 Papaver somniferum HOM05D004151 ORTHO05D004775 1.4e-36 157.1 89 82.0
Atru.chr5.2062 Acer truncatum HOM05D004151 ORTHO05D004775 1.8e-36 156.8 128 63.3
Carub.0006s1646 Capsella rubella HOM05D004151 ORTHO05D004775 1.8e-36 156.8 104 71.2
Aqoxy1G00486 Aquilegia oxysepala HOM05D004151 ORTHO05D004775 3.1e-36 156.0 97 75.3
COL.COLO4_13598 Corchorus olitorius HOM05D004151 ORTHO05D004775 3.1e-36 156.0 93 77.4
MD00G1189600 Malus domestica HOM05D004151 ORTHO05D004775 3.1e-36 156.0 104 75.0
Glyma.19G110900 Glycine max HOM05D004151 ORTHO05D004775 4.0e-36 155.6 113 66.4
Peaxi162Scf00076g01048 Petunia axillaris HOM05D004151 ORTHO05D004775 4.0e-36 155.6 87 83.9
Prupe.8G064800 Prunus persica HOM05D004151 ORTHO05D004775 6.8e-36 154.8 90 81.1
Atru.chr5.2060 Acer truncatum HOM05D004151 ORTHO05D004775 2.6e-35 152.9 128 62.5
AagrBONN_evm.TU.Sc2ySwM_362.2901 Anthoceros agrestis HOM05D004151 ORTHO05D004775 4.4e-35 152.1 104 67.3
Cre13.g567850 Chlamydomonas reinhardtii HOM05D004151 ORTHO05D004775 5.8e-35 151.8 108 70.4
Mapoly0086s0024 Marchantia polymorpha HOM05D004151 ORTHO05D004775 7.5e-35 151.4 89 77.5
CBR_g48747 Chara braunii HOM05D004151 ORTHO05D004775 2.2e-34 149.8 92 73.9
BcaB05g23300 Brassica carinata HOM05D004151 ORTHO05D004775 1.1e-33 147.5 116 64.7
AT5G18180 Arabidopsis thaliana HOM05D004151 ORTHO05D004775 1.9e-33 146.7 107 68.2
AL6G29380 Arabidopsis lyrata HOM05D004151 ORTHO05D004775 5.4e-33 145.2 106 67.9
Nitab4.5_0002769g0090 Nicotiana tabacum HOM05D004151 ORTHO05D004775 3.3e-30 136.0 106 68.9
MBI11_g31283_MAGBIO Magnolia biondii HOM05D004151 ORTHO05D004775 1.6e-29 133.7 70 85.7
MCO13G219 Micromonas commoda HOM05D004151 ORTHO05D004775 4.7e-29 132.1 85 67.1
C09p58800 Brassica napus HOM05D004151 ORTHO05D004775 1.4e-28 130.6 79 73.4
BolC2t11912H Brassica oleracea HOM05D004151 ORTHO05D004775 1.3e-26 124.0 106 61.3
SMO347G0554 Selaginella moellendorffii HOM05D004151 ORTHO05D004775 1.9e-25 120.2 106 62.3
BraA10t42874Z Brassica rapa HOM05D004151 ORTHO05D004775 1.3e-23 114.0 99 62.6
PRCOL_00005119 Prasinoderma coloniale HOM05D005848 ORTHO05D007532 4.3e-22 109.0 88 52.3
unitig_744.g24550 Utricularia gibba HOM05D004151 ORTHO05D004775 9.0e-20 101.3 50 90.0
Actinidia30553 Actinidia chinensis HOM05D004151 ORTHO05D004775 9.9e-19 97.8 54 85.2
Zm00001eb274230 Zea mays HOM05D004151 ORTHO05D004775 1.7e-18 97.1 54 77.8
C02p58510 Brassica napus HOM05D004151 ORTHO05D004775 4.9e-18 95.5 75 60.0
Haze_27090 Corylus avellana HOM05D000590 ORTHO05D004775 1.1e-17 94.4 104 47.1
HanXRQChr05g0143841 Helianthus annuus HOM05D004151 ORTHO05D004775 2.1e-13 80.1 101 47.5
Oeu035720.1 Olea europaea HOM05D004151 ORTHO05D004775 4.0e-12 75.9 50 68.0
Oeu035726.1 Olea europaea HOM05D004151 ORTHO05D004775 1.5e-11 73.9 50 68.0
BcaB08g36698 Brassica carinata HOM05D004151 ORTHO05D004775 3.5e-08 62.8 45 66.7
BolC9t58722H Brassica oleracea HOM05D004151 ORTHO05D004775 1.5e-06 57.4 39 69.2


User provided reference genes

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