Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund14573 Selenicereus undatus HOM05D004152 ORTHO05D004878 6.5e-124 447.6 256 100.0
EL10Ac5g12362 Beta vulgaris HOM05D004152 ORTHO05D004878 3.0e-89 332.4 245 72.2
AUR62007107 Chenopodium quinoa HOM05D004152 ORTHO05D004878 1.3e-87 327.0 246 70.7
AUR62019969 Chenopodium quinoa HOM05D004152 ORTHO05D004878 2.7e-85 319.3 246 69.1
Ah.12g054170 Amaranthus hybridus HOM05D004152 ORTHO05D004878 1.9e-83 313.2 247 68.4
Gohir.A04G110300 Gossypium hirsutum HOM05D004152 ORTHO05D004878 2.1e-82 309.7 195 80.0
Gorai.012G137200 Gossypium raimondii HOM05D004152 ORTHO05D004878 2.1e-82 309.7 195 80.0
COL.COLO4_08312 Corchorus olitorius HOM05D004152 ORTHO05D004878 8.0e-82 307.8 196 79.1
Gohir.D04G150500 Gossypium hirsutum HOM05D004152 ORTHO05D004878 3.0e-81 305.8 195 79.0
Gohir.D04G150600 Gossypium hirsutum HOM05D004152 ORTHO05D004878 3.0e-81 305.8 195 79.0
ClCG01G004210 Citrullus lanatus HOM05D004152 ORTHO05D004878 4.0e-81 305.4 185 80.5
Duzib052G0353 Durio zibethinus HOM05D004152 ORTHO05D004878 8.9e-81 304.3 197 77.2
Sc10g0005540 Simmondsia chinensis HOM05D004152 ORTHO05D004878 8.9e-81 304.3 171 86.0
CSS0047405 Camellia sinensis var. sinensis HOM05D004152 ORTHO05D004878 1.7e-79 300.1 165 86.7
MELO3C005518.2 Cucumis melo HOM05D004152 ORTHO05D004878 1.7e-79 300.1 201 75.6
Thecc.02G150400 Theobroma cacao HOM05D004152 ORTHO05D004878 2.2e-79 299.7 202 76.7
Nitab4.5_0000618g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 8.3e-79 297.7 186 78.5
Nitab4.5_0002881g0050 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.1e-78 297.4 189 77.2
PGSC0003DMG400024154 Solanum tuberosum HOM05D004152 ORTHO05D004878 1.1e-78 297.4 205 72.7
Sopen06g020930 Solanum pennellii HOM05D004152 ORTHO05D004878 3.2e-78 295.8 195 75.4
Manes.01G082700 Manihot esculenta HOM05D004152 ORTHO05D004878 5.4e-78 295.0 184 77.7
CsaV3_5G004400 Cucumis sativus L. HOM05D004152 ORTHO05D004878 9.2e-78 294.3 191 77.5
Haze_18794 Corylus avellana HOM05D004152 ORTHO05D004878 1.2e-77 293.9 199 76.4
Lj2C222T2 Lonicera japonica HOM05D004152 ORTHO05D004878 1.2e-77 293.9 179 79.9
TWI81G0703 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 1.2e-77 293.9 164 86.0
CANSAT21G2552 Cannabis sativa HOM05D004152 ORTHO05D004878 2.0e-77 293.1 185 80.0
QL12p011587 Quercus lobata HOM05D004152 ORTHO05D004878 2.0e-77 293.1 194 78.4
Gorai.005G214700 Gossypium raimondii HOM05D004152 ORTHO05D004878 3.5e-77 292.4 202 74.3
PGR031G2826 Punica granatum HOM05D004152 ORTHO05D004878 3.5e-77 292.4 179 79.3
Solyc06g060790.1 Solanum lycopersicum HOM05D004152 ORTHO05D004878 3.5e-77 292.4 204 72.1
Cpa.g.sc29.188 Carica papaya HOM05D004152 ORTHO05D004878 4.6e-77 292.0 218 70.6
VMungo0331G1163 Vigna mungo HOM05D004152 ORTHO05D004878 4.6e-77 292.0 193 74.6
TWI60G0584 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 6.0e-77 291.6 198 75.3
Lj3g0007947 Lotus japonicus HOM05D004152 ORTHO05D004878 1.7e-76 290.0 199 72.9
Ca_20428_v3 Cicer arietinum L. HOM05D004152 ORTHO05D004878 2.3e-76 289.7 198 73.2
Gohir.D02G191900 Gossypium hirsutum HOM05D004152 ORTHO05D004878 2.3e-76 289.7 167 85.0
Phvul.010G153800 Phaseolus vulgaris HOM05D004152 ORTHO05D004878 2.3e-76 289.7 193 73.6
Ciclev10021871m.g Citrus clementina HOM05D004152 ORTHO05D004878 3.0e-76 289.3 186 74.7
Aqoxy7G00694 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 8.6e-76 287.7 187 75.4
Sed0004379 Sechium edule HOM05D004152 ORTHO05D004878 8.6e-76 287.7 195 74.9
Glyma.08G210500 Glycine max HOM05D004152 ORTHO05D004878 1.1e-75 287.3 197 71.6
Medtr4g011180 Medicago truncatula HOM05D004152 ORTHO05D004878 1.9e-75 286.6 200 72.5
Peaxi162Scf01022g00023 Petunia axillaris HOM05D004152 ORTHO05D004878 1.9e-75 286.6 183 77.0
THA.LOC104824129 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 1.9e-75 286.6 199 75.9
Lalb_Chr25g0279491 Lupinus albus HOM05D004152 ORTHO05D004878 3.3e-75 285.8 177 78.0
arahy.Tifrunner.gnm1.ann1.HAI1EF Arachis hypogaea HOM05D004152 ORTHO05D004878 5.6e-75 285.0 200 72.5
PSO210G0624 Papaver somniferum HOM05D004152 ORTHO05D004878 7.3e-75 284.6 195 74.4
FAN08G2273 Fragaria x ananassa HOM05D004152 ORTHO05D004878 9.5e-75 284.3 198 72.2
FAN13G0727 Fragaria x ananassa HOM05D004152 ORTHO05D004878 9.5e-75 284.3 194 73.7
Glyma.07G032200 Glycine max HOM05D004152 ORTHO05D004878 9.5e-75 284.3 196 71.4
Sabra03G0074600 Salix brachista HOM05D004152 ORTHO05D004878 9.5e-75 284.3 182 76.9
TAR629G1833 Trochodendron aralioides HOM05D004152 ORTHO05D004878 9.5e-75 284.3 174 78.2
CDE11G0751 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 1.2e-74 283.9 181 75.7
Potri.003G107800 Populus trichocarpa HOM05D004152 ORTHO05D004878 1.2e-74 283.9 181 76.2
FAN18G1702 Fragaria x ananassa HOM05D004152 ORTHO05D004878 1.6e-74 283.5 199 72.4
CiPaw.16G091100 Carya illinoinensis HOM05D004152 ORTHO05D004878 2.1e-74 283.1 196 73.0
FvH4_5g19250 Fragaria vesca HOM05D004152 ORTHO05D004878 2.1e-74 283.1 198 72.7
Psat7g255640 Pisum sativum HOM05D004152 ORTHO05D004878 2.1e-74 283.1 178 77.0
AT2G43090 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 6.2e-74 281.6 166 81.3
arahy.Tifrunner.gnm1.ann1.Y2K32V Arachis hypogaea HOM05D004152 ORTHO05D004878 6.2e-74 281.6 170 79.4
CAN.G62.23 Capsicum annuum HOM05D004152 ORTHO05D004878 6.2e-74 281.6 175 80.0
FAN04G2897 Fragaria x ananassa HOM05D004152 ORTHO05D004878 6.2e-74 281.6 193 71.5
Actinidia10839 Actinidia chinensis HOM05D004152 ORTHO05D004878 8.0e-74 281.2 168 82.1
MSTRG.12117 Avicennia marina HOM05D004152 ORTHO05D004878 8.0e-74 281.2 191 75.4
SGA_v2.0_scaffold104G30172 Striga asiatica HOM05D004152 ORTHO05D004878 8.0e-74 281.2 166 82.5
Aa31LG1G24900 Aethionema arabicum HOM05D004152 ORTHO05D004878 1.1e-73 280.8 191 73.3
Cfa019694 Carpinus fangiana HOM05D004152 ORTHO05D004878 1.1e-73 280.8 196 73.0
PSO210G4930 Papaver somniferum HOM05D004152 ORTHO05D004878 1.1e-73 280.8 185 75.7
HanXRQChr03g0088791 Helianthus annuus HOM05D004152 ORTHO05D004878 1.4e-73 280.4 186 75.8
SalBow6G1227 Salvia bowleyana HOM05D004152 ORTHO05D004878 1.4e-73 280.4 172 77.9
Nn6g33894 Nelumbo nucifera HOM05D004152 ORTHO05D004878 1.8e-73 280.0 200 70.0
Rhsim07G0110300 Rhododendron simsii HOM05D004152 ORTHO05D004878 1.8e-73 280.0 187 76.5
Aqoxy7G00850 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 2.3e-73 279.6 195 72.8
MD04G1062100 Malus domestica HOM05D004152 ORTHO05D004878 2.3e-73 279.6 222 65.8
Atru.chr9.1286 Acer truncatum HOM05D004152 ORTHO05D004878 3.1e-73 279.3 200 70.0
AL4G41740 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 3.1e-73 279.3 166 80.7
Migut.A01125 Erythranthe guttata HOM05D004152 ORTHO05D004878 3.1e-73 279.3 166 83.1
Carub.0004s2557 Capsella rubella HOM05D004152 ORTHO05D004878 5.2e-73 278.5 166 80.7
C03p28570 Brassica napus HOM05D004152 ORTHO05D004878 6.8e-73 278.1 188 74.5
BolC3t15222H Brassica oleracea HOM05D004152 ORTHO05D004878 8.9e-73 277.7 188 74.5
Thhalv10017142m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 1.2e-72 277.3 166 80.1
CARHR138160 Cardamine hirsuta HOM05D004152 ORTHO05D004878 1.5e-72 276.9 166 79.5
Nitab4.5_0002881g0130 Nicotiana tabacum HOM05D004152 ORTHO05D004878 2.0e-72 276.6 189 72.5
DCAR_008502 Daucus carota HOM05D004152 ORTHO05D004878 4.4e-72 275.4 187 74.3
MD06G1055800 Malus domestica HOM05D004152 ORTHO05D004878 4.4e-72 275.4 212 67.5
A03p23950 Brassica napus HOM05D004152 ORTHO05D004878 5.8e-72 275.0 198 70.2
HanXRQChr13g0417841 Helianthus annuus HOM05D004152 ORTHO05D004878 5.8e-72 275.0 195 72.3
BraA05t19344Z Brassica rapa HOM05D004152 ORTHO05D004878 7.5e-72 274.6 197 70.1
BraA03t11610Z Brassica rapa HOM05D004152 ORTHO05D004878 1.3e-71 273.9 198 70.2
Sp4g25220 Schrenkiella parvula HOM05D004152 ORTHO05D004878 1.7e-71 273.5 166 78.3
BcaC02g12415 Brassica carinata HOM05D004152 ORTHO05D004878 3.7e-71 272.3 179 73.2
BolC4t22054H Brassica oleracea HOM05D004152 ORTHO05D004878 3.7e-71 272.3 179 73.2
Oeu040710.1 Olea europaea HOM05D004152 ORTHO05D004878 3.7e-71 272.3 187 72.7
Prupe.5G066300 Prunus persica HOM05D004152 ORTHO05D004878 4.9e-71 271.9 221 64.7
BcaNung03538 Brassica carinata HOM05D004152 ORTHO05D004878 1.1e-70 270.8 202 68.3
CARHR169410 Cardamine hirsuta HOM05D004152 ORTHO05D004878 1.4e-70 270.4 200 68.0
unitig_899.g15440 Utricularia gibba HOM05D004152 ORTHO05D004878 1.4e-70 270.4 190 71.1
DCAR_002274 Daucus carota HOM05D004152 ORTHO05D004878 3.2e-70 269.2 200 68.5
ECA240G2077 Erigeron canadensis HOM05D004152 ORTHO05D004878 4.1e-70 268.9 200 68.5
THA.LOC104803472 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 7.0e-70 268.1 201 70.1
BcaB01g01073 Brassica carinata HOM05D004152 ORTHO05D004878 5.6e-67 258.5 199 65.8
SEGI_19785 Sequoiadendron giganteum HOM05D004152 ORTHO05D004878 5.6e-67 258.5 208 64.4
CARHR169370 Cardamine hirsuta HOM05D004152 ORTHO05D004878 1.4e-65 253.8 203 65.5
Aa31LG10G13480 Aethionema arabicum HOM05D004152 ORTHO05D004878 1.8e-65 253.4 186 68.8
Dinv39162 Davidia involucrata HOM05D004152 ORTHO05D004878 4.0e-65 252.3 151 81.5
Lj8A264G55 Lonicera japonica HOM05D004152 ORTHO05D004878 7.5e-64 248.1 155 79.4
Carub.0005s2573 Capsella rubella HOM05D004152 ORTHO05D004878 2.9e-63 246.1 175 69.7
Lsat_1_v5_gn_6_92521 Lactuca sativa HOM05D004152 ORTHO05D004878 2.9e-63 246.1 199 67.3
Mapoly0001s0104 Marchantia polymorpha HOM05D004152 ORTHO05D004878 2.9e-63 246.1 177 67.2
AL5G40810 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 4.9e-63 245.4 205 63.9
AT3G58990 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 1.1e-62 244.2 189 67.2
Carub.0002s0595 Capsella rubella HOM05D004152 ORTHO05D004878 1.1e-62 244.2 178 68.5
Pp3c1_29090 Physcomitrium patens HOM05D004152 ORTHO05D004878 1.1e-62 244.2 162 70.4
SMO274G0039 Selaginella moellendorffii HOM05D004152 ORTHO05D004878 1.1e-62 244.2 161 71.4
Zm00001eb249330 Zea mays HOM05D004152 ORTHO05D004878 1.1e-62 244.2 194 66.5
Nitab4.5_0001410g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.4e-62 243.8 184 66.3
Pp3c14_19120 Physcomitrium patens HOM05D004152 ORTHO05D004878 2.4e-62 243.0 172 66.9
BraA05t19345Z Brassica rapa HOM05D004152 ORTHO05D004878 7.1e-62 241.5 199 64.8
A05p03590 Brassica napus HOM05D004152 ORTHO05D004878 9.2e-62 241.1 199 64.8
ATR0693G400 Amborella trichopoda HOM05D004152 ORTHO05D004878 1.2e-61 240.7 202 63.9
AagrBONN_evm.TU.Sc2ySwM_228.3330 Anthoceros agrestis HOM05D004152 ORTHO05D004878 3.5e-61 239.2 200 61.0
BcaNung03539 Brassica carinata HOM05D004152 ORTHO05D004878 4.6e-61 238.8 198 62.6
CDE11G0227 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 7.8e-61 238.0 150 76.0
Os02g0655300 Oryza sativa ssp. japonica HOM05D004152 ORTHO05D004878 7.8e-61 238.0 171 69.0
AL4G41750 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 1.7e-60 236.9 204 61.8
CARHR138170 Cardamine hirsuta HOM05D004152 ORTHO05D004878 2.3e-60 236.5 204 61.3
BcaC02g12414 Brassica carinata HOM05D004152 ORTHO05D004878 3.0e-60 236.1 204 62.3
Aa31LG1G24910 Aethionema arabicum HOM05D004152 ORTHO05D004878 3.9e-60 235.7 174 67.8
C04p04150 Brassica napus HOM05D004152 ORTHO05D004878 6.6e-60 235.0 208 60.6
BolC4t22055H Brassica oleracea HOM05D004152 ORTHO05D004878 6.6e-60 235.0 208 60.6
AT2G43100 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 8.6e-60 234.6 204 60.8
Thhalv10017125m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 8.6e-60 234.6 199 61.8
Sp4g25230 Schrenkiella parvula HOM05D004152 ORTHO05D004878 1.5e-59 233.8 207 61.4
BcaC01g05264 Brassica carinata HOM05D004152 ORTHO05D004878 7.3e-59 231.5 193 66.8
Cre06.g252650 Chlamydomonas reinhardtii HOM05D004152 ORTHO05D004878 7.3e-59 231.5 180 63.9
Carub.0004s2558 Capsella rubella HOM05D004152 ORTHO05D004878 2.4e-57 226.5 205 60.5
EL10Ac5g12363 Beta vulgaris HOM05D004152 ORTHO05D004878 2.9e-55 219.5 187 61.5
Cc08_g12220 Coffea canephora HOM05D004152 ORTHO05D004878 2.4e-54 216.5 142 76.8
Gohir.A03G168700 Gossypium hirsutum HOM05D004152 ORTHO05D004878 2.1e-53 213.4 167 67.1
HPP92_020921 Vanilla planifolia HOM05D004152 ORTHO05D004878 3.9e-52 209.1 181 60.2
Dinv21650 Davidia involucrata HOM05D004152 ORTHO05D004878 9.6e-51 204.5 121 81.0
SalBow1G7183 Salvia bowleyana HOM05D004152 ORTHO05D004878 3.1e-49 199.5 150 67.3
Actinidia31515 Actinidia chinensis HOM05D004152 ORTHO05D004878 3.4e-48 196.1 132 75.0
Ah.12g054180 Amaranthus hybridus HOM05D004152 ORTHO05D004878 5.8e-48 195.3 172 57.6
Carub.0005s2576 Capsella rubella HOM05D004152 ORTHO05D004878 5.4e-46 188.7 163 62.0
SHI09309 Sapria himalayana HOM05D004152 ORTHO05D004878 6.0e-45 185.3 120 70.8
Sed0021243 Sechium edule HOM05D004152 ORTHO05D004878 6.6e-44 181.8 135 68.9
Rhsim05G0121600 Rhododendron simsii HOM05D004152 ORTHO05D004878 1.9e-43 180.3 152 63.8
Lj8A267T12 Lonicera japonica HOM05D004152 ORTHO05D004878 4.5e-40 169.1 167 56.9
Nitab4.5_0002372g0010 Nicotiana tabacum HOM05D004152 ORTHO05D004878 8.4e-39 164.9 104 79.8
Lj8A266T18 Lonicera japonica HOM05D004152 ORTHO05D004878 1.8e-36 157.1 167 55.1
TPR.G10893 Trifolium pratense HOM05D004152 ORTHO05D004878 3.7e-34 149.4 111 70.3
Oeu047732.1 Olea europaea HOM05D004152 ORTHO05D004878 1.5e-32 144.1 200 46.0
SalBow1G0783 Salvia bowleyana HOM05D001430 ORTHO05D004878 6.7e-28 128.6 103 61.2
Lsat_1_v5_gn_5_55401 Lactuca sativa HOM05D004152 ORTHO05D004878 2.1e-26 123.6 85 70.6
AUR62007106 Chenopodium quinoa HOM05D004152 ORTHO05D004878 3.7e-26 122.9 112 58.0
BcaB05g25308 Brassica carinata HOM05D004152 ORTHO05D004878 7.6e-24 115.2 81 67.9
Rhsim03G0103100 Rhododendron simsii HOM05D004152 ORTHO05D004878 6.7e-20 102.1 88 61.4
ATR0693G063 Amborella trichopoda HOM05D004152 ORTHO05D004878 1.1e-19 101.3 125 46.4
Lsat_1_v5_gn_7_1160 Lactuca sativa HOM05D004152 ORTHO05D004878 4.3e-19 99.4 61 77.0
A05p03570 Brassica napus HOM05D000373 ORTHO05D007048 1.6e-18 97.4 62 72.6
C04p04140 Brassica napus HOM05D000373 ORTHO05D007048 6.3e-18 95.5 62 71.0
Ah.14g083550 Amaranthus hybridus HOM05D004152 ORTHO05D004878 5.9e-16 89.0 50 88.0
COL.COLO4_34273 Corchorus olitorius HOM05D004152 ORTHO05D004878 7.2e-14 82.0 154 38.3
GSVIVG01007403001 Vitis vinifera HOM05D004152 ORTHO05D004878 6.1e-13 79.0 161 37.9
Cfa024802 Carpinus fangiana HOM05D003112 ORTHO05D003660 1.3e-10 71.2 128 35.9
PRCOL_00005264 Prasinoderma coloniale HOM05D003112 ORTHO05D003660 1.3e-10 71.2 173 30.6
MCO01G562 Micromonas commoda HOM05D003112 ORTHO05D003660 2.4e-09 67.0 143 34.3
C03p28580 Brassica napus HOM05D004152 ORTHO05D004878 2.0e-08 63.9 84 39.3
CsaV3_5G004360 Cucumis sativus L. HOM05D004152 ORTHO05D004878 2.6e-08 63.5 54 57.4
Ca_28701_v3 Cicer arietinum L. HOM05D004152 ORTHO05D003660 3.2e-06 56.6 101 36.6
Cfa023744 Carpinus fangiana HOM05D003112 ORTHO05D003660 5.5e-06 55.8 133 33.1


User provided reference genes

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