Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund11961 Selenicereus undatus HOM05D004365 ORTHO05D005123 6.2e-66 253.8 116 100.0
Hund03115 Selenicereus undatus HOM05D004365 ORTHO05D005123 3.9e-60 234.6 113 92.9
Sc05g0009630 Simmondsia chinensis HOM05D004365 ORTHO05D005123 2.8e-58 228.4 105 97.1
Nn4g25611 Nelumbo nucifera HOM05D004365 ORTHO05D005123 2.0e-56 222.2 105 94.3
Ah.13g072000 Amaranthus hybridus HOM05D004365 ORTHO05D005123 4.5e-56 221.1 105 93.3
ClCG05G006460 Citrullus lanatus HOM05D004365 ORTHO05D005123 4.5e-56 221.1 105 93.3
Actinidia13364 Actinidia chinensis HOM05D004365 ORTHO05D005123 5.8e-56 220.7 105 94.3
CANSAT54G2312 Cannabis sativa HOM05D004365 ORTHO05D005123 1.0e-55 219.9 105 92.4
HanXRQChr05g0145921 Helianthus annuus HOM05D004365 ORTHO05D005123 1.0e-55 219.9 105 93.3
TAR365G0998 Trochodendron aralioides HOM05D004365 ORTHO05D005123 1.0e-55 219.9 105 92.4
CiPaw.01G139700 Carya illinoinensis HOM05D004365 ORTHO05D005123 1.3e-55 219.5 105 92.4
Oeu016485.1 Olea europaea HOM05D004365 ORTHO05D005123 1.7e-55 219.2 105 91.4
Haze_01277 Corylus avellana HOM05D004365 ORTHO05D005123 2.2e-55 218.8 105 92.4
ECA246G3323 Erigeron canadensis HOM05D004365 ORTHO05D005123 2.2e-55 218.8 105 92.4
Sed0001961 Sechium edule HOM05D004365 ORTHO05D005123 2.2e-55 218.8 105 91.4
Aqoxy2G02775 Aquilegia oxysepala HOM05D004365 ORTHO05D005123 2.9e-55 218.4 105 91.4
Hma1.2p1_0013F.1_g008720 Hydrangea macrophylla HOM05D004365 ORTHO05D005123 2.9e-55 218.4 105 91.4
Thecc.04G297700 Theobroma cacao HOM05D004365 ORTHO05D005123 2.9e-55 218.4 105 91.4
GSVIVG01035016001 Vitis vinifera HOM05D004365 ORTHO05D005123 2.9e-55 218.4 105 92.4
arahy.Tifrunner.gnm1.ann1.79Y4XM Arachis hypogaea HOM05D004365 ORTHO05D005123 3.8e-55 218.0 116 84.5
arahy.Tifrunner.gnm1.ann1.C4ZZV2 Arachis hypogaea HOM05D004365 ORTHO05D005123 3.8e-55 218.0 116 84.5
CSS0008168 Camellia sinensis var. sinensis HOM05D004365 ORTHO05D005123 3.8e-55 218.0 105 92.4
Gohir.A01G034300 Gossypium hirsutum HOM05D004365 ORTHO05D005123 6.5e-55 217.2 105 90.5
Gohir.D01G023535 Gossypium hirsutum HOM05D004365 ORTHO05D005123 6.5e-55 217.2 105 90.5
Gorai.002G030000 Gossypium raimondii HOM05D004365 ORTHO05D005123 6.5e-55 217.2 105 90.5
Prupe.1G122000 Prunus persica HOM05D004365 ORTHO05D005123 6.5e-55 217.2 105 90.5
Sed0006030 Sechium edule HOM05D004365 ORTHO05D005123 6.5e-55 217.2 105 90.5
Migut.N00047 Erythranthe guttata HOM05D004365 ORTHO05D005123 8.4e-55 216.9 105 90.5
CDE02G0371 Ceratophyllum demersum HOM05D004365 ORTHO05D005123 1.1e-54 216.5 105 90.5
Duzib052G0793 Durio zibethinus HOM05D004365 ORTHO05D005123 1.1e-54 216.5 105 90.5
Lalb_Chr18g0058831 Lupinus albus HOM05D004365 ORTHO05D005123 1.1e-54 216.5 105 89.5
QL06p011635 Quercus lobata HOM05D004365 ORTHO05D005123 1.1e-54 216.5 104 90.4
CDE09G0896 Ceratophyllum demersum HOM05D004365 ORTHO05D005123 1.4e-54 216.1 105 89.5
MD16G1157100 Malus domestica HOM05D004365 ORTHO05D005123 1.4e-54 216.1 105 89.5
MSTRG.21775 Avicennia marina HOM05D004365 ORTHO05D005123 1.9e-54 215.7 105 91.4
DCAR_023347 Daucus carota HOM05D004365 ORTHO05D005123 2.5e-54 215.3 105 89.5
PGR004G2507 Punica granatum HOM05D004365 ORTHO05D005123 2.5e-54 215.3 105 92.4
TWI73G0828 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 2.5e-54 215.3 105 89.5
Eucgr.H02666 Eucalyptus grandis HOM05D004365 ORTHO05D005123 3.2e-54 214.9 105 90.5
Glyma.09G037400 Glycine max HOM05D004365 ORTHO05D005123 4.2e-54 214.5 105 89.5
Lsat_1_v5_gn_6_116841 Lactuca sativa HOM05D004365 ORTHO05D005123 4.2e-54 214.5 105 88.6
SMO174G0170 Selaginella moellendorffii HOM05D004365 ORTHO05D005123 4.2e-54 214.5 104 89.4
HPP92_002026 Vanilla planifolia HOM05D004365 ORTHO05D005123 4.2e-54 214.5 105 92.4
Ciclev10006256m.g Citrus clementina HOM05D004365 ORTHO05D005123 5.5e-54 214.2 105 88.6
Mapoly0028s0097 Marchantia polymorpha HOM05D004365 ORTHO05D005123 7.1e-54 213.8 105 90.5
PSO761G0124 Papaver somniferum HOM05D004365 ORTHO05D005123 7.1e-54 213.8 105 88.6
Phvul.009G256100 Phaseolus vulgaris HOM05D004365 ORTHO05D005123 7.1e-54 213.8 105 90.5
RcHm_v2.0_Chr4g0424591 Rosa chinensis HOM05D004365 ORTHO05D005123 7.1e-54 213.8 105 88.6
SEGI_37796 Sequoiadendron giganteum HOM05D004365 ORTHO05D005123 9.3e-54 213.4 105 89.5
MD13G1156200 Malus domestica HOM05D004365 ORTHO05D005123 1.2e-53 213.0 105 88.6
Nitab4.5_0000647g0090 Nicotiana tabacum HOM05D004365 ORTHO05D005123 1.2e-53 213.0 105 89.5
Peaxi162Scf00164g01133 Petunia axillaris HOM05D004365 ORTHO05D005123 1.2e-53 213.0 105 89.5
Solyc05g053430.3 Solanum lycopersicum HOM05D004365 ORTHO05D005123 1.2e-53 213.0 105 89.5
Sopen05g031930 Solanum pennellii HOM05D004365 ORTHO05D005123 1.2e-53 213.0 105 89.5
PGSC0003DMG400027213 Solanum tuberosum HOM05D004365 ORTHO05D005123 1.2e-53 213.0 105 89.5
Duzib212G0477 Durio zibethinus HOM05D004365 ORTHO05D005123 1.6e-53 212.6 105 88.6
FvH4_4g19480 Fragaria vesca HOM05D004365 ORTHO05D005123 1.6e-53 212.6 105 88.6
FAN07G2773 Fragaria x ananassa HOM05D004365 ORTHO05D005123 1.6e-53 212.6 105 88.6
Lj6g0010863 Lotus japonicus HOM05D004365 ORTHO05D005123 1.6e-53 212.6 105 88.6
Psat6g078760 Pisum sativum HOM05D004365 ORTHO05D005123 1.6e-53 212.6 105 90.5
Medtr2g034520 Medicago truncatula HOM05D004365 ORTHO05D005123 2.1e-53 212.2 105 89.5
PSO210G6722 Papaver somniferum HOM05D004365 ORTHO05D005123 2.7e-53 211.8 105 87.6
Ca_01870_v3 Cicer arietinum L. HOM05D004365 ORTHO05D005123 3.5e-53 211.5 105 88.6
Glyma.15G142700 Glycine max HOM05D004365 ORTHO05D005123 3.5e-53 211.5 105 89.5
Cc03_g00970 Coffea canephora HOM05D004365 ORTHO05D005123 4.6e-53 211.1 105 88.6
unitig_22.g6354 Utricularia gibba HOM05D004365 ORTHO05D005123 4.6e-53 211.1 105 89.5
TPR.G5757 Trifolium pratense HOM05D004365 ORTHO05D005123 7.9e-53 210.3 105 88.6
Os12g0560400 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 1.0e-52 209.9 105 88.6
Pp3c18_17910 Physcomitrium patens HOM05D004365 ORTHO05D005123 3.0e-52 208.4 105 85.7
SMO364G0316 Selaginella moellendorffii HOM05D004365 ORTHO05D005123 3.0e-52 208.4 105 85.7
Manes.15G005400 Manihot esculenta HOM05D004365 ORTHO05D005123 5.1e-52 207.6 105 85.7
Dinv44302 Davidia involucrata HOM05D004365 ORTHO05D005123 1.1e-51 206.5 105 86.7
THA.LOC104820300 Tarenaya hassleriana HOM05D004365 ORTHO05D005123 1.1e-51 206.5 105 83.8
Sabra08G0080800 Salix brachista HOM05D004365 ORTHO05D005123 1.9e-51 205.7 105 85.7
AL3G29960 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 2.5e-51 205.3 105 83.8
Aa31LG8G4020 Aethionema arabicum HOM05D004365 ORTHO05D005123 3.3e-51 204.9 105 82.9
BcaC09g50324 Brassica carinata HOM05D004365 ORTHO05D005123 3.3e-51 204.9 105 82.9
BcaNung00211 Brassica carinata HOM05D004365 ORTHO05D005123 3.3e-51 204.9 105 82.9
A01p21300 Brassica napus HOM05D004365 ORTHO05D005123 3.3e-51 204.9 105 82.9
BolC1t02605H Brassica oleracea HOM05D004365 ORTHO05D005123 3.3e-51 204.9 105 82.9
Cpa.g.sc9.86 Carica papaya HOM05D004365 ORTHO05D005123 3.3e-51 204.9 105 83.8
Carub.0003s1673 Capsella rubella HOM05D004365 ORTHO05D005123 4.3e-51 204.5 105 83.8
Thhalv10021989m.g Eutrema salsugineum HOM05D004365 ORTHO05D005123 4.3e-51 204.5 105 82.9
Potri.008G106900 Populus trichocarpa HOM05D004365 ORTHO05D005123 4.3e-51 204.5 105 84.8
vmacro15189 Vaccinium macrocarpon HOM05D004365 ORTHO05D005123 4.3e-51 204.5 125 76.8
BcaB08g34342 Brassica carinata HOM05D004365 ORTHO05D005123 5.7e-51 204.1 105 82.9
BcaC07g37975 Brassica carinata HOM05D004365 ORTHO05D005123 5.7e-51 204.1 105 82.9
A08p12300 Brassica napus HOM05D004365 ORTHO05D005123 5.7e-51 204.1 105 82.9
BolC8t48354H Brassica oleracea HOM05D004365 ORTHO05D005123 5.7e-51 204.1 105 82.9
BraA08t33228Z Brassica rapa HOM05D004365 ORTHO05D005123 5.7e-51 204.1 105 82.9
Sabra10G0110500 Salix brachista HOM05D004365 ORTHO05D005123 5.7e-51 204.1 105 85.7
AT3G16980 Arabidopsis thaliana HOM05D004365 ORTHO05D005123 9.7e-51 203.4 105 82.9
AL7G38770 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 1.6e-50 202.6 105 81.9
AT4G16265 Arabidopsis thaliana HOM05D004365 ORTHO05D005123 1.6e-50 202.6 105 81.9
Carub.0007s2525 Capsella rubella HOM05D004365 ORTHO05D005123 1.6e-50 202.6 105 81.9
SpUn0413_0020 Schrenkiella parvula HOM05D004365 ORTHO05D005123 1.6e-50 202.6 105 81.9
Nitab4.5_0006365g0010 Nicotiana tabacum HOM05D004365 ORTHO05D005123 3.7e-50 201.4 124 75.8
arahy.Tifrunner.gnm1.ann1.MX4EIU Arachis hypogaea HOM05D004365 ORTHO05D005123 4.8e-50 201.1 104 84.6
Thhalv10026603m.g Eutrema salsugineum HOM05D004365 ORTHO05D005123 6.3e-50 200.7 105 81.0
TWI09G0163 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 6.3e-50 200.7 105 83.8
CARHR222650 Cardamine hirsuta HOM05D004365 ORTHO05D005123 1.4e-49 199.5 105 80.0
Zm00001eb088460 Zea mays HOM05D004365 ORTHO05D005123 1.8e-49 199.1 105 81.0
CARHR092230 Cardamine hirsuta HOM05D004365 ORTHO05D005123 3.1e-49 198.4 105 81.9
Lalb_Chr08g0234431 Lupinus albus HOM05D004365 ORTHO05D005123 6.9e-49 197.2 105 82.9
EL10Ac3g05464 Beta vulgaris HOM05D004365 ORTHO05D005123 3.4e-48 194.9 105 84.8
Os03g0102200 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 2.9e-47 191.8 105 78.1
SalBow2G2782 Salvia bowleyana HOM05D004365 ORTHO05D005123 1.9e-46 189.1 121 74.4
A09p28560 Brassica napus HOM05D004365 ORTHO05D005123 4.2e-46 188.0 105 76.2
BraA09t38417Z Brassica rapa HOM05D004365 ORTHO05D005123 4.2e-46 188.0 105 76.2
Manes.03G202800 Manihot esculenta HOM05D004365 ORTHO05D005123 7.2e-46 187.2 105 79.0
Sp7g14780 Schrenkiella parvula HOM05D004365 ORTHO05D005123 7.2e-46 187.2 130 65.4
Glyma.07G241200 Glycine max HOM05D004365 ORTHO05D005123 3.9e-44 181.4 107 71.0
BcaC04g21057 Brassica carinata HOM05D004365 ORTHO05D005123 5.1e-44 181.0 105 72.4
C09p36150 Brassica napus HOM05D004365 ORTHO05D005123 6.7e-44 180.6 105 72.4
BolC9t56454H Brassica oleracea HOM05D004365 ORTHO05D005123 6.7e-44 180.6 105 72.4
Lj4g0028172 Lotus japonicus HOM05D004365 ORTHO05D005123 6.7e-44 180.6 107 72.9
Phvul.003G112600 Phaseolus vulgaris HOM05D004365 ORTHO05D005123 2.5e-43 178.7 107 70.1
TWI53G1753 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 3.3e-43 178.3 104 74.0
AUR62041403 Chenopodium quinoa HOM05D004365 ORTHO05D005123 7.4e-43 177.2 93 87.1
HPP92_005120 Vanilla planifolia HOM05D004365 ORTHO05D005123 1.3e-42 176.4 104 71.2
Dinv15193 Davidia involucrata HOM05D004365 ORTHO05D005123 2.8e-42 175.3 88 90.9
AUR62016130 Chenopodium quinoa HOM05D004365 ORTHO05D005123 1.8e-41 172.6 80 96.2
TWI53G0542 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 1.8e-41 172.6 104 72.1
VMungo1215G2752 Vigna mungo HOM05D004365 ORTHO05D005123 1.2e-40 169.9 105 67.6
SGA_v2.0_scaffold119G32662 Striga asiatica HOM05D004365 ORTHO05D005123 1.5e-40 169.5 84 90.5
Mapoly0087s0071 Marchantia polymorpha HOM05D004365 ORTHO05D005123 7.7e-40 167.2 105 69.5
Rhsim02G0004900 Rhododendron simsii HOM05D004365 ORTHO05D005123 7.7e-40 167.2 90 83.3
FAN12G3053 Fragaria x ananassa HOM05D004365 ORTHO05D005123 5.0e-39 164.5 80 88.8
FvH4_3g15650 Fragaria vesca HOM05D004365 ORTHO05D005123 3.2e-38 161.8 80 86.2
arahy.Tifrunner.gnm1.ann1.2XVX11 Arachis hypogaea HOM05D004365 ORTHO05D005123 5.5e-38 161.0 104 72.1
FAN12G1077 Fragaria x ananassa HOM05D004365 ORTHO05D005123 1.2e-37 159.8 82 84.1
Atru.chr4.3028 Acer truncatum HOM05D004365 ORTHO05D005123 1.6e-37 159.5 79 86.1
Potri.010G142500 Populus trichocarpa HOM05D004365 ORTHO05D005123 1.6e-37 159.5 93 78.5
BraA01t02037Z Brassica rapa HOM05D004365 ORTHO05D005123 4.7e-37 157.9 81 81.5
COL.COLO4_34649 Corchorus olitorius HOM05D001765 ORTHO05D005123 1.4e-36 156.4 77 92.2
Os07g0615800 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 1.4e-36 156.4 105 60.0
VMungo1309G0143 Vigna mungo HOM05D004365 ORTHO05D005123 1.4e-36 156.4 78 91.0
Zm00001eb086380 Zea mays HOM05D004365 ORTHO05D005123 3.0e-36 155.2 80 83.8
ATR0665G356 Amborella trichopoda HOM05D004365 ORTHO05D005123 5.1e-36 154.5 78 89.7
BcaB04g18375 Brassica carinata HOM05D004365 ORTHO05D005123 5.1e-36 154.5 80 80.0
Zm00001eb138580 Zea mays HOM05D004365 ORTHO05D005123 6.7e-36 154.1 81 81.5
DCAR_027008 Daucus carota HOM05D004365 ORTHO05D005123 8.8e-36 153.7 170 49.4
Eucgr.H02672 Eucalyptus grandis HOM05D004365 ORTHO05D005123 2.0e-35 152.5 84 81.0
Zm00001eb230190 Zea mays HOM05D004365 ORTHO05D005123 3.3e-35 151.8 81 82.7
Sabra10G0110300 Salix brachista HOM05D004365 ORTHO05D005123 1.4e-33 146.4 105 66.7
TPR.G10905 Trifolium pratense HOM05D004365 ORTHO05D005123 2.6e-32 142.1 78 80.8
Haze_26633 Corylus avellana HOM05D004365 ORTHO05D005123 1.4e-28 129.8 103 56.3
MCO01G087 Micromonas commoda HOM05D004365 ORTHO05D005123 1.8e-28 129.4 104 53.8
Zm00001eb270680 Zea mays HOM05D004365 ORTHO05D005123 8.2e-26 120.6 64 84.4
Zm00001eb327460 Zea mays HOM05D004365 ORTHO05D005123 2.2e-23 112.5 94 52.1
Hma1.2p1_0096F.1_g047650 Hydrangea macrophylla HOM05D004365 ORTHO05D005123 4.2e-22 108.2 56 85.7
SHI00177 Sapria himalayana HOM05D004365 ORTHO05D005123 4.2e-22 108.2 71 67.6
Zm00001eb137030 Zea mays HOM05D004365 ORTHO05D005123 1.8e-20 102.8 54 85.2
Cre12.g505750 Chlamydomonas reinhardtii HOM05D004365 ORTHO05D005123 4.4e-19 98.2 106 45.3
AL7G38230 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 4.1e-17 91.7 50 74.0
Hma1.2p1_0234F.1_g098400 Hydrangea macrophylla HOM05D001088 ORTHO05D005123 4.1e-17 91.7 54 77.8
AagrBONN_evm.TU.Sc2ySwM_117.3306 Anthoceros agrestis HOM05D004365 ORTHO05D005123 9.1e-17 90.5 104 45.2
PRCOL_00000204 Prasinoderma coloniale HOM05D004365 ORTHO05D005123 1.7e-15 86.3 106 43.4
SMO304G0059 Selaginella moellendorffii HOM05D004365 ORTHO05D005123 4.7e-13 78.2 104 39.4
Mapoly0020s0069 Marchantia polymorpha HOM05D004365 ORTHO05D005123 8.0e-13 77.4 111 36.9
Cfa024902 Carpinus fangiana HOM05D004365 ORTHO05D005123 5.2e-12 74.7 58 51.7
BcaB01g01499 Brassica carinata HOM05D004365 ORTHO05D005123 6.8e-12 74.3 41 75.6
Os11g0676650 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 2.2e-10 69.3 40 77.5
Pp3c15_5550 Physcomitrium patens HOM05D006029 ORTHO05D007439 6.6e-07 57.8 104 32.7
EL10Ac5g10924 Beta vulgaris HOM05D006029 ORTHO05D007439 1.5e-06 56.6 89 28.1
AagrBONN_evm.TU.Sc2ySwM_344.170 Anthoceros agrestis HOM05D001942 ORTHO05D001996 3.3e-06 55.5 95 34.7
Sc02g0002910 Simmondsia chinensis HOM05D006029 ORTHO05D007439 5.5e-06 54.7 87 29.9
Rhsim01G0175700 Rhododendron simsii HOM05D006029 ORTHO05D007439 7.2e-06 54.3 45 46.7


User provided reference genes

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