Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund09862 Selenicereus undatus HOM05D005087 ORTHO05D006427 3.3e-68 261.5 129 100.0
Hund09856 Selenicereus undatus HOM05D005087 ORTHO05D006427 1.0e-61 240.0 126 92.9
Sc10g0000340 Simmondsia chinensis HOM05D005087 ORTHO05D006427 4.8e-59 231.1 125 87.2
GSVIVG01032195001 Vitis vinifera HOM05D005087 ORTHO05D006427 6.9e-58 227.3 127 85.0
EL10Ac2g04364 Beta vulgaris HOM05D005087 ORTHO05D006427 4.5e-57 224.6 142 79.6
AUR62023092 Chenopodium quinoa HOM05D005087 ORTHO05D006427 4.5e-57 224.6 126 87.3
AUR62009415 Chenopodium quinoa HOM05D005087 ORTHO05D006427 1.0e-56 223.4 126 86.5
Hma1.2p1_0685F.1_g203130 Hydrangea macrophylla HOM05D005087 ORTHO05D006427 1.7e-56 222.6 127 83.5
Hma1.2p1_0685F.1_g203140 Hydrangea macrophylla HOM05D005087 ORTHO05D006427 1.7e-56 222.6 127 83.5
Nitab4.5_0002388g0080 Nicotiana tabacum HOM05D005087 ORTHO05D006427 6.5e-56 220.7 125 82.4
Sopen01g034670 Solanum pennellii HOM05D005087 ORTHO05D006427 1.9e-55 219.2 125 81.6
CAN.G219.75 Capsicum annuum HOM05D005087 ORTHO05D006427 2.5e-55 218.8 125 80.0
Solyc01g087720.4 Solanum lycopersicum HOM05D005087 ORTHO05D006427 4.2e-55 218.0 125 80.8
TAR623G1255 Trochodendron aralioides HOM05D005087 ORTHO05D006427 4.2e-55 218.0 125 82.4
MELO3C023581.2 Cucumis melo HOM05D005087 ORTHO05D006427 9.4e-55 216.9 126 80.2
Nitab4.5_0000707g0070 Nicotiana tabacum HOM05D005087 ORTHO05D006427 9.4e-55 216.9 125 81.6
Prupe.2G022000 Prunus persica HOM05D005087 ORTHO05D006427 1.6e-54 216.1 127 81.9
QL04p009808 Quercus lobata HOM05D005087 ORTHO05D006427 1.6e-54 216.1 125 82.4
THA.LOC104819098 Tarenaya hassleriana HOM05D005087 ORTHO05D006427 3.6e-54 214.9 126 81.0
MSTRG.17010 Avicennia marina HOM05D005087 ORTHO05D006427 4.7e-54 214.5 124 82.3
Atru.chr11.2578 Acer truncatum HOM05D005087 ORTHO05D006427 6.1e-54 214.2 127 80.3
Cfa022636 Carpinus fangiana HOM05D005087 ORTHO05D006427 6.1e-54 214.2 127 79.5
Haze_03133 Corylus avellana HOM05D005087 ORTHO05D006427 6.1e-54 214.2 127 79.5
Haze_03136 Corylus avellana HOM05D005087 ORTHO05D006427 6.1e-54 214.2 127 79.5
ClCG09G004390 Citrullus lanatus HOM05D005087 ORTHO05D006427 1.0e-53 213.4 126 78.6
TAR623G1215 Trochodendron aralioides HOM05D005087 ORTHO05D006427 1.0e-53 213.4 123 82.1
CsaV3_7G030750 Cucumis sativus L. HOM05D005087 ORTHO05D006427 1.4e-53 213.0 126 79.4
Sp6g28190 Schrenkiella parvula HOM05D005087 ORTHO05D006427 1.4e-53 213.0 124 81.5
CiPaw.14G002700 Carya illinoinensis HOM05D005087 ORTHO05D006427 3.9e-53 211.5 127 78.0
Dinv09311 Davidia involucrata HOM05D005087 ORTHO05D006427 3.9e-53 211.5 127 80.3
RcHm_v2.0_Chr1g0317911 Rosa chinensis HOM05D005087 ORTHO05D006427 3.9e-53 211.5 127 80.3
AT5G15920 Arabidopsis thaliana HOM05D005087 ORTHO05D006427 5.2e-53 211.1 124 80.6
CARHR197390 Cardamine hirsuta HOM05D005087 ORTHO05D006427 5.2e-53 211.1 124 80.6
Lsat_1_v5_gn_1_103161 Lactuca sativa HOM05D005087 ORTHO05D006427 1.5e-52 209.5 125 79.2
Eucgr.G03334 Eucalyptus grandis HOM05D005087 ORTHO05D006427 2.0e-52 209.1 125 81.6
Duzib177G0717 Durio zibethinus HOM05D005087 ORTHO05D006427 2.6e-52 208.8 125 80.8
Actinidia21541 Actinidia chinensis HOM05D005087 ORTHO05D006427 4.4e-52 208.0 125 77.6
FvH4_7g01640 Fragaria vesca HOM05D005087 ORTHO05D006427 5.7e-52 207.6 128 79.7
FAN06G3789 Fragaria x ananassa HOM05D005087 ORTHO05D006427 5.7e-52 207.6 128 79.7
Psat6g018320 Pisum sativum HOM05D005087 ORTHO05D006427 5.7e-52 207.6 121 81.0
Rhsim01G0127000 Rhododendron simsii HOM05D005087 ORTHO05D006427 5.7e-52 207.6 128 76.6
TPR.G14572 Trifolium pratense HOM05D005087 ORTHO05D006427 5.7e-52 207.6 124 79.8
TWI09G0473 Tripterygium wilfordii HOM05D005087 ORTHO05D006427 5.7e-52 207.6 125 80.0
Migut.B01270 Erythranthe guttata HOM05D005087 ORTHO05D006427 7.4e-52 207.2 125 78.4
Gohir.A13G157100 Gossypium hirsutum HOM05D005087 ORTHO05D006427 7.4e-52 207.2 125 80.0
Gohir.D13G161900 Gossypium hirsutum HOM05D005087 ORTHO05D006427 9.7e-52 206.8 125 79.2
Gorai.013G183900 Gossypium raimondii HOM05D005087 ORTHO05D006427 9.7e-52 206.8 125 79.2
FAN03G0563 Fragaria x ananassa HOM05D005087 ORTHO05D006427 1.3e-51 206.5 128 79.7
Medtr3g033470 Medicago truncatula HOM05D005087 ORTHO05D006427 1.3e-51 206.5 126 77.8
AL6G26800 Arabidopsis lyrata HOM05D005087 ORTHO05D006427 1.7e-51 206.1 124 79.0
Lj3g0015731 Lotus japonicus HOM05D005087 ORTHO05D006427 1.7e-51 206.1 124 78.2
PGR031G1517 Punica granatum HOM05D005087 ORTHO05D006427 1.7e-51 206.1 127 77.2
Thhalv10012535m.g Eutrema salsugineum HOM05D005087 ORTHO05D006427 2.2e-51 205.7 124 79.0
A03p07470 Brassica napus HOM05D005087 ORTHO05D006427 3.7e-51 204.9 124 79.0
Thecc.05G218700 Theobroma cacao HOM05D005087 ORTHO05D006427 3.7e-51 204.9 125 80.0
Carub.0006s1411 Capsella rubella HOM05D005087 ORTHO05D006427 4.8e-51 204.5 124 78.2
ECA248G2604 Erigeron canadensis HOM05D005087 ORTHO05D006427 4.8e-51 204.5 122 77.9
FAN10G1149 Fragaria x ananassa HOM05D005087 ORTHO05D006427 4.8e-51 204.5 128 78.1
Lju99A9T21 Lonicera japonica HOM05D005087 ORTHO05D006427 4.8e-51 204.5 137 73.7
Phvul.002G285500 Phaseolus vulgaris HOM05D005087 ORTHO05D006427 6.3e-51 204.1 128 78.1
HanXRQChr01g0007751 Helianthus annuus HOM05D005087 ORTHO05D006427 8.2e-51 203.8 125 76.0
C03p08670 Brassica napus HOM05D005087 ORTHO05D006427 1.1e-50 203.4 124 78.2
BolC3t13367H Brassica oleracea HOM05D005087 ORTHO05D006427 1.1e-50 203.4 124 78.2
BraA03t10076Z Brassica rapa HOM05D005087 ORTHO05D006427 1.1e-50 203.4 124 79.0
Ciclev10030582m.g Citrus clementina HOM05D005087 ORTHO05D006427 1.4e-50 203.0 123 78.0
Glyma.20G198300 Glycine max HOM05D005087 ORTHO05D006427 1.4e-50 203.0 124 79.0
Sabra16G0161000 Salix brachista HOM05D005087 ORTHO05D006427 2.4e-50 202.2 124 78.2
Aa31LG11G13680 Aethionema arabicum HOM05D005087 ORTHO05D006427 4.1e-50 201.4 124 75.8
MD07G1021900 Malus domestica HOM05D005087 ORTHO05D006427 4.1e-50 201.4 125 76.8
Lj9C640G8 Lonicera japonica HOM05D005087 ORTHO05D006427 7.0e-50 200.7 115 81.7
CANSAT80G0443 Cannabis sativa HOM05D005087 ORTHO05D006427 1.2e-49 199.9 124 75.8
Ca_14518_v3 Cicer arietinum L. HOM05D005087 ORTHO05D006427 1.2e-49 199.9 120 79.2
MBI11_g23277_MAGBIO Magnolia biondii HOM05D005087 ORTHO05D006427 1.6e-49 199.5 126 77.8
ATR0626G229 Amborella trichopoda HOM05D005087 ORTHO05D006427 2.6e-49 198.7 128 75.0
Potri.001G262600 Populus trichocarpa HOM05D005087 ORTHO05D006427 3.5e-49 198.4 124 76.6
SalBow5G0870 Salvia bowleyana HOM05D005087 ORTHO05D006427 4.5e-49 198.0 125 75.2
SalBow5G2001 Salvia bowleyana HOM05D005087 ORTHO05D006427 4.5e-49 198.0 125 75.2
Lj3g0013327 Lotus japonicus HOM05D005087 ORTHO05D006427 2.2e-48 195.7 127 72.4
Lalb_Chr04g0263871 Lupinus albus HOM05D005087 ORTHO05D006427 2.2e-48 195.7 128 74.2
vmacro21195 Vaccinium macrocarpon HOM05D005087 ORTHO05D006427 2.9e-48 195.3 114 78.1
SHI04082 Sapria himalayana HOM05D005087 ORTHO05D006427 3.8e-48 194.9 115 79.1
Medtr4g115050 Medicago truncatula HOM05D005087 ORTHO05D006427 5.0e-48 194.5 115 79.1
SGA_v2.0_scaffold119G32758 Striga asiatica HOM05D005087 ORTHO05D006427 5.0e-48 194.5 125 73.6
Cc00_g23000 Coffea canephora HOM05D005087 ORTHO05D006427 8.5e-48 193.7 128 73.4
Aqoxy1G00327 Aquilegia oxysepala HOM05D005087 ORTHO05D006427 1.1e-47 193.4 125 75.2
arahy.Tifrunner.gnm1.ann1.1A5L99 Arachis hypogaea HOM05D005087 ORTHO05D006427 1.1e-47 193.4 121 76.0
DCAR_029700 Daucus carota HOM05D005087 ORTHO05D006427 1.5e-47 193.0 124 71.8
Zm00001eb225540 Zea mays HOM05D005087 ORTHO05D006427 3.2e-47 191.8 128 71.9
arahy.Tifrunner.gnm1.ann1.JJ1LEU Arachis hypogaea HOM05D005087 ORTHO05D006427 5.5e-47 191.0 121 75.2
Medtr5g036370 Medicago truncatula HOM05D005087 ORTHO05D006427 9.4e-47 190.3 124 73.4
HPP92_016892 Vanilla planifolia HOM05D001496 ORTHO05D007453 4.7e-46 188.0 133 68.4
Peaxi162Scf00694g00319 Petunia axillaris HOM05D005087 ORTHO05D006427 2.3e-45 185.7 107 81.3
SEGI_29436 Sequoiadendron giganteum HOM05D005087 ORTHO05D006427 5.7e-44 181.0 122 70.5
BcaB01g05014 Brassica carinata HOM05D005087 ORTHO05D006427 1.7e-43 179.5 124 72.6
PSO339G3397 Papaver somniferum HOM05D005087 ORTHO05D006427 1.7e-43 179.5 127 69.3
Oeu049481.1 Olea europaea HOM05D005087 ORTHO05D006427 2.4e-42 175.6 104 81.7
SEGI_00270 Sequoiadendron giganteum HOM05D005087 ORTHO05D006427 3.1e-42 175.3 118 71.2
Mapoly0007s0066 Marchantia polymorpha HOM05D005087 ORTHO05D006427 4.1e-42 174.9 125 66.4
CSS0029256 Camellia sinensis var. sinensis HOM05D005087 ORTHO05D006427 5.3e-42 174.5 106 76.4
PSO210G7144 Papaver somniferum HOM05D005087 ORTHO05D006427 1.2e-41 173.3 116 69.0
Os05g0596600 Oryza sativa ssp. japonica HOM05D005087 ORTHO05D006427 2.0e-41 172.6 139 59.7
Manes.10G136400 Manihot esculenta HOM05D005087 ORTHO05D006427 6.5e-40 167.5 102 77.5
Pp3c24_4940 Physcomitrium patens HOM05D005087 ORTHO05D006427 1.9e-39 166.0 124 64.5
CDE09G1121 Ceratophyllum demersum HOM05D005087 ORTHO05D006427 6.8e-37 157.5 97 75.3
AagrBONN_evm.TU.Sc2ySwM_344.2054 Anthoceros agrestis HOM05D005087 ORTHO05D006427 2.8e-35 152.1 128 57.0
SMO143G0265 Selaginella moellendorffii HOM05D005087 ORTHO05D006427 1.8e-34 149.4 105 64.8
Os11g0572900 Oryza sativa ssp. japonica HOM05D005087 ORTHO05D006427 4.7e-30 134.8 89 69.7
PRCOL_00002930 Prasinoderma coloniale HOM05D005087 ORTHO05D006427 1.8e-26 122.9 115 53.0
MCO04G035 Micromonas commoda HOM05D005087 ORTHO05D006427 1.3e-24 116.7 109 48.6
unitig_22.g5433 Utricularia gibba HOM05D005087 ORTHO05D006427 1.8e-21 106.3 59 81.4
Cfa027028 Carpinus fangiana HOM05D005087 ORTHO05D006427 1.5e-20 103.2 110 46.4
Os11g0577350 Oryza sativa ssp. japonica HOM05D005087 ORTHO05D006427 4.6e-17 91.7 61 70.5
Nn7g36293 Nelumbo nucifera HOM05D005087 ORTHO05D006427 3.9e-16 88.6 53 79.2
Cre10.g440200 Chlamydomonas reinhardtii HOM05D005087 ORTHO05D006427 1.9e-15 86.3 103 42.7
Cpa.g.sc125.40 Carica papaya HOM05D005087 ORTHO05D006427 5.6e-15 84.7 55 69.1
CBR_g88572 Chara braunii HOM05D005087 ORTHO05D000002 6.2e-14 81.3 65 58.5
Os11g0577300 Oryza sativa ssp. japonica HOM05D005087 ORTHO05D006427 8.9e-13 77.4 52 71.2
Actinidia13977 Actinidia chinensis HOM05D005087 ORTHO05D006427 1.1e-10 70.5 75 50.7
Cre10.g440300 Chlamydomonas reinhardtii HOM05D005087 ORTHO05D006427 1.9e-10 69.7 96 35.4
Haze_26632 Corylus avellana HOM05D004178 ORTHO05D005204 2.4e-10 69.3 79 40.5
ECA232G0935 Erigeron canadensis HOM05D004178 ORTHO05D005204 4.3e-07 58.5 95 33.7
EL10Ac3g05856 Beta vulgaris HOM05D004178 ORTHO05D005204 7.3e-07 57.8 106 30.2
HanXRQChr01g0028141 Helianthus annuus HOM05D004178 ORTHO05D005204 7.3e-07 57.8 109 32.1
PGR042G0822 Punica granatum HOM05D004178 ORTHO05D005204 9.5e-07 57.4 115 34.8
Aqoxy5G03870 Aquilegia oxysepala HOM05D004178 ORTHO05D005204 1.2e-06 57.0 126 27.8
MCO11G708 Micromonas commoda HOM05D004178 ORTHO05D005204 1.2e-06 57.0 114 29.8
Dinv06570 Davidia involucrata HOM05D004178 ORTHO05D005204 1.6e-06 56.6 111 32.4
AUR62015432 Chenopodium quinoa HOM05D004178 ORTHO05D005204 2.1e-06 56.2 106 31.1
Cfa025728 Carpinus fangiana HOM05D004178 ORTHO05D005204 2.8e-06 55.8 78 35.9
Cre12.g525050 Chlamydomonas reinhardtii HOM05D004178 ORTHO05D005204 2.8e-06 55.8 79 36.7
Oeu021706.1 Olea europaea HOM05D004178 ORTHO05D005204 2.8e-06 55.8 111 29.7
DCAR_014618 Daucus carota HOM05D004178 ORTHO05D005204 3.6e-06 55.5 106 31.1
Medtr4g061050 Medicago truncatula HOM05D004178 ORTHO05D005204 4.7e-06 55.1 123 28.5
Solyc05g051680.4 Solanum lycopersicum HOM05D004178 ORTHO05D005204 4.7e-06 55.1 111 31.5
Sopen05g030150 Solanum pennellii HOM05D004178 ORTHO05D005204 4.7e-06 55.1 111 32.4
MSTRG.8830 Avicennia marina HOM05D004178 ORTHO05D005204 8.1e-06 54.3 113 28.3
Lj1C978G4 Lonicera japonica HOM05D004178 ORTHO05D005204 8.1e-06 54.3 106 30.2


User provided reference genes

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