Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund08725 Selenicereus undatus HOM05D001514 ORTHO05D005209 1.3e-165 586.3 293 100.0
EL10Ac8g19111 Beta vulgaris HOM05D001514 ORTHO05D005209 4.4e-108 395.2 214 87.9
AUR62025186 Chenopodium quinoa HOM05D001514 ORTHO05D005209 5.7e-108 394.8 214 86.0
Prupe.7G201200 Prunus persica HOM05D001514 ORTHO05D005209 5.4e-98 361.7 218 75.2
Thecc.09G079100 Theobroma cacao HOM05D001514 ORTHO05D005209 5.4e-98 361.7 214 76.2
Haze_10270 Corylus avellana HOM05D001514 ORTHO05D005209 7.0e-98 361.3 214 75.2
TWI60G0494 Tripterygium wilfordii HOM05D001514 ORTHO05D005209 7.0e-98 361.3 218 75.2
Ciclev10012695m.g Citrus clementina HOM05D001514 ORTHO05D005209 4.5e-97 358.6 214 75.2
AUR62028988 Chenopodium quinoa HOM05D001514 ORTHO05D005209 7.7e-97 357.8 197 85.8
QL11p000460 Quercus lobata HOM05D001514 ORTHO05D005209 2.9e-96 355.9 228 70.6
Potri.006G143400 Populus trichocarpa HOM05D001514 ORTHO05D005209 3.8e-96 355.5 214 74.8
Manes.03G199800 Manihot esculenta HOM05D001514 ORTHO05D005209 5.0e-96 355.1 216 75.0
CiPaw.03G207800 Carya illinoinensis HOM05D001514 ORTHO05D005209 1.5e-95 353.6 214 73.8
TAR626G0523 Trochodendron aralioides HOM05D001514 ORTHO05D005209 2.5e-95 352.8 212 75.5
TAR626G1304 Trochodendron aralioides HOM05D001514 ORTHO05D005209 2.5e-95 352.8 212 75.5
COL.COLO4_18112 Corchorus olitorius HOM05D001514 ORTHO05D005209 3.3e-95 352.4 214 73.4
CSS0005970 Camellia sinensis var. sinensis HOM05D001514 ORTHO05D005209 7.2e-95 351.3 214 72.0
Duzib168G1760 Durio zibethinus HOM05D001514 ORTHO05D005209 1.2e-94 350.5 214 73.4
Nn8g38685 Nelumbo nucifera HOM05D001514 ORTHO05D005209 1.6e-94 350.1 212 75.0
TAR383G0900 Trochodendron aralioides HOM05D001514 ORTHO05D005209 3.6e-94 349.0 212 73.1
Cpa.g.sc280.6 Carica papaya HOM05D001514 ORTHO05D005209 1.4e-93 347.1 215 73.5
Dinv42376 Davidia involucrata HOM05D001514 ORTHO05D005209 3.0e-93 345.9 214 70.6
Gohir.A13G191300 Gossypium hirsutum HOM05D001514 ORTHO05D005209 4.0e-93 345.5 214 72.0
GSVIVG01015097001 Vitis vinifera HOM05D001514 ORTHO05D005209 4.0e-93 345.5 215 74.0
Cc06_g12020 Coffea canephora HOM05D001514 ORTHO05D005209 1.2e-92 344.0 214 71.5
CsaV3_2G001190 Cucumis sativus L. HOM05D001514 ORTHO05D005209 2.6e-92 342.8 215 73.0
Atru.chr7.1692 Acer truncatum HOM05D001514 ORTHO05D005209 4.4e-92 342.0 215 71.6
Haze_25985 Corylus avellana HOM05D001514 ORTHO05D005209 4.4e-92 342.0 251 64.1
Haze_25993 Corylus avellana HOM05D001514 ORTHO05D005209 4.4e-92 342.0 251 64.1
Hma1.2p1_0928F.1_g237710 Hydrangea macrophylla HOM05D001514 ORTHO05D005209 9.8e-92 340.9 213 70.4
Nitab4.5_0011363g0010 Nicotiana tabacum HOM05D001514 ORTHO05D005209 9.8e-92 340.9 227 68.7
MBI13_g11335_MAGBIO Magnolia biondii HOM05D001514 ORTHO05D005209 1.3e-91 340.5 212 72.2
ClCG11G001470 Citrullus lanatus HOM05D001514 ORTHO05D005209 3.7e-91 339.0 237 67.5
Gohir.D13G196700 Gossypium hirsutum HOM05D001514 ORTHO05D005209 4.9e-91 338.6 213 70.9
FvH4_1g08420 Fragaria vesca HOM05D001514 ORTHO05D005209 8.3e-91 337.8 218 70.2
Gorai.013G225400 Gossypium raimondii HOM05D001514 ORTHO05D005209 8.3e-91 337.8 213 70.9
MD15G1215800 Malus domestica HOM05D001514 ORTHO05D005209 1.8e-90 336.7 214 70.1
MD15G1215700 Malus domestica HOM05D001514 ORTHO05D005209 3.1e-90 335.9 214 70.6
Sabra06G0113700 Salix brachista HOM05D001514 ORTHO05D005209 3.1e-90 335.9 246 65.4
Eucgr.C00825 Eucalyptus grandis HOM05D001514 ORTHO05D005209 1.2e-89 334.0 212 69.8
PGSC0003DMG400000323 Solanum tuberosum HOM05D001514 ORTHO05D005209 1.0e-88 330.9 215 68.8
Solyc12g009090.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.9e-88 329.3 215 68.4
Nitab4.5_0000073g0250 Nicotiana tabacum HOM05D001514 ORTHO05D005209 5.0e-88 328.6 220 68.2
MSTRG.6002 Avicennia marina HOM05D001514 ORTHO05D005209 6.6e-88 328.2 215 69.3
Sed0009954 Sechium edule HOM05D001514 ORTHO05D005209 6.6e-88 328.2 215 68.4
Psat4g016720 Pisum sativum HOM05D001514 ORTHO05D005209 8.6e-88 327.8 218 66.5
Sopen12g004040 Solanum pennellii HOM05D001514 ORTHO05D005209 8.6e-88 327.8 215 67.9
MELO3C004649.2 Cucumis melo HOM05D001514 ORTHO05D005209 3.3e-87 325.9 214 71.5
Aa31sc437G10 Aethionema arabicum HOM05D001514 ORTHO05D005209 7.3e-87 324.7 214 67.8
SGA_v2.0_scaffold97G29140 Striga asiatica HOM05D001514 ORTHO05D005209 2.8e-86 322.8 214 66.8
Ca_21314_v3 Cicer arietinum L. HOM05D001514 ORTHO05D005209 4.7e-86 322.0 211 67.3
PGR142G1966 Punica granatum HOM05D001514 ORTHO05D005209 4.7e-86 322.0 212 70.8
RcHm_v2.0_Chr2g0094521 Rosa chinensis HOM05D001514 ORTHO05D005209 6.1e-86 321.6 211 70.1
ECA233G5402 Erigeron canadensis HOM05D001514 ORTHO05D005209 1.4e-85 320.5 215 67.0
Glyma.17G050300 Glycine max HOM05D001514 ORTHO05D005209 1.4e-85 320.5 237 64.6
Lsat_1_v5_gn_7_35041 Lactuca sativa HOM05D001514 ORTHO05D005209 1.4e-85 320.5 214 66.4
Lj4g0013364 Lotus japonicus HOM05D001514 ORTHO05D005209 5.2e-85 318.5 211 66.8
Glyma.13G109300 Glycine max HOM05D001514 ORTHO05D005209 8.9e-85 317.8 217 68.2
AL4G21890 Arabidopsis lyrata HOM05D001514 ORTHO05D005209 2.0e-84 316.6 214 64.5
SalBow6G1458 Salvia bowleyana HOM05D001514 ORTHO05D005209 2.0e-84 316.6 214 65.0
Thhalv10002659m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 3.4e-84 315.8 214 65.4
HanXRQChr09g0237811 Helianthus annuus HOM05D001514 ORTHO05D005209 3.4e-84 315.8 215 67.0
THA.LOC104808891 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 4.4e-84 315.5 214 66.4
Migut.J00937 Erythranthe guttata HOM05D001514 ORTHO05D005209 1.7e-83 313.5 213 64.8
SalBow3G1655 Salvia bowleyana HOM05D001514 ORTHO05D005209 2.2e-83 313.2 213 65.3
AT2G28230 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 8.3e-83 311.2 214 64.0
Lj7A685T53 Lonicera japonica HOM05D001514 ORTHO05D005209 8.3e-83 311.2 256 57.4
Medtr4g125510 Medicago truncatula HOM05D001514 ORTHO05D005209 8.3e-83 311.2 211 65.9
Sp4g11040 Schrenkiella parvula HOM05D001514 ORTHO05D005209 8.3e-83 311.2 214 64.5
HPP92_009229 Vanilla planifolia HOM05D001514 ORTHO05D005209 8.3e-83 311.2 212 66.5
Carub.0004s0911 Capsella rubella HOM05D001514 ORTHO05D005209 1.1e-82 310.8 214 63.6
TPR.G9427 Trifolium pratense HOM05D001514 ORTHO05D005209 1.9e-82 310.1 213 65.3
vmacro06328 Vaccinium macrocarpon HOM05D001514 ORTHO05D005209 2.4e-82 309.7 243 61.3
Nitab4.5_0001866g0080 Nicotiana tabacum HOM05D001514 ORTHO05D005209 3.2e-82 309.3 210 67.6
ATR0598G338 Amborella trichopoda HOM05D001514 ORTHO05D005209 5.4e-82 308.5 212 64.2
Phvul.003G131900 Phaseolus vulgaris HOM05D001514 ORTHO05D005209 5.4e-82 308.5 217 65.9
Lalb_Chr07g0181101 Lupinus albus HOM05D001514 ORTHO05D005209 2.0e-81 306.6 212 61.8
BcaB02g10157 Brassica carinata HOM05D001514 ORTHO05D005209 2.7e-81 306.2 211 65.4
BcaC02g10956 Brassica carinata HOM05D001514 ORTHO05D005209 2.7e-81 306.2 211 65.4
C04p23290 Brassica napus HOM05D001514 ORTHO05D005209 2.7e-81 306.2 211 65.4
A07p18760 Brassica napus HOM05D001514 ORTHO05D005209 3.5e-81 305.8 213 63.8
PSO210G4222 Papaver somniferum HOM05D001514 ORTHO05D005209 3.5e-81 305.8 214 64.0
arahy.Tifrunner.gnm1.ann1.0DN5L0 Arachis hypogaea HOM05D001514 ORTHO05D005209 4.6e-81 305.4 211 62.6
arahy.Tifrunner.gnm1.ann1.0TW07M Arachis hypogaea HOM05D001514 ORTHO05D005209 4.6e-81 305.4 211 62.6
arahy.Tifrunner.gnm1.ann1.I7BKR8 Arachis hypogaea HOM05D001514 ORTHO05D005209 4.6e-81 305.4 211 62.6
PSO386G0176 Papaver somniferum HOM05D001514 ORTHO05D005209 4.6e-81 305.4 214 64.5
Carub.0004s0910 Capsella rubella HOM05D001514 ORTHO05D005209 7.8e-81 304.7 214 61.7
BraA07t29585Z Brassica rapa HOM05D001514 ORTHO05D005209 6.6e-80 301.6 212 63.7
CDE05G2440 Ceratophyllum demersum HOM05D001514 ORTHO05D005209 1.9e-79 300.1 213 65.3
Solyc05g041170.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.9e-79 300.1 214 61.2
THA.LOC104826585 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 3.3e-79 299.3 232 59.9
Medtr2g063927 Medicago truncatula HOM05D001514 ORTHO05D005209 7.3e-79 298.1 211 62.1
BolC4t23831H Brassica oleracea HOM05D001514 ORTHO05D005209 9.5e-79 297.7 210 64.3
VMungo1215G3125 Vigna mungo HOM05D001514 ORTHO05D005209 1.6e-78 297.0 197 67.5
AT4G09070 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 8.9e-77 291.2 214 58.4
Aqoxy7G01056 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 1.3e-75 287.3 211 58.8
Peaxi162Scf00928g00034 Petunia axillaris HOM05D001514 ORTHO05D005209 2.7e-73 279.6 213 61.0
Aqoxy7G01057 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 1.3e-72 277.3 211 57.3
Actinidia29922 Actinidia chinensis HOM05D001514 ORTHO05D005209 6.6e-72 275.0 176 68.8
Thhalv10017586m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 1.9e-71 273.5 214 58.4
Solyc10g054950.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.3e-71 272.7 211 57.3
Sc08g0008840 Simmondsia chinensis HOM05D001514 ORTHO05D005209 5.6e-71 271.9 163 79.1
Sc08g0009330 Simmondsia chinensis HOM05D001514 ORTHO05D005209 5.6e-71 271.9 163 79.1
Os09g0443500 Oryza sativa ssp. japonica HOM05D001514 ORTHO05D005209 1.6e-70 270.4 223 54.3
CANSAT11G2059 Cannabis sativa HOM05D001514 ORTHO05D005209 2.1e-70 270.0 165 73.9
Solyc10g049510.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.6e-70 269.2 213 57.3
Zm00001eb314270 Zea mays HOM05D001514 ORTHO05D005209 8.1e-70 268.1 216 54.6
Sabra06G0112300 Salix brachista HOM05D001514 ORTHO05D005209 3.1e-69 266.2 165 75.8
FAN26G1993 Fragaria x ananassa HOM05D001514 ORTHO05D005209 3.2e-66 256.1 170 71.2
Rhsim03G0229200 Rhododendron simsii HOM05D001514 ORTHO05D005209 2.7e-65 253.1 166 70.5
Carub.0006s2765 Capsella rubella HOM05D001514 ORTHO05D005209 3.0e-64 249.6 214 47.7
CARHR121150 Cardamine hirsuta HOM05D001514 ORTHO05D005209 3.0e-64 249.6 214 53.7
PGSC0003DMG400027872 Solanum tuberosum HOM05D001514 ORTHO05D005209 4.3e-63 245.7 184 58.7
Actinidia38471 Actinidia chinensis HOM05D001514 ORTHO05D005209 5.6e-63 245.4 197 63.5
FAN26G0729 Fragaria x ananassa HOM05D001514 ORTHO05D005209 1.2e-62 244.2 190 63.7
Solyc10g055100.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 8.1e-62 241.5 211 53.1
SMO141G0192 Selaginella moellendorffii HOM05D001514 ORTHO05D005209 3.8e-59 232.6 212 48.6
Solyc10g055160.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.8e-59 232.6 181 55.8
Mapoly0097s0017 Marchantia polymorpha HOM05D001514 ORTHO05D005209 9.2e-58 228.0 209 46.4
CAN.G1963.7 Capsicum annuum HOM05D001514 ORTHO05D005209 4.6e-57 225.7 169 61.5
Nitab4.5_0000073g0220 Nicotiana tabacum HOM05D001514 ORTHO05D005209 4.6e-57 225.7 136 72.1
Solyc10g055020.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.3e-56 223.4 217 48.4
Psat0s2317g0240 Pisum sativum HOM05D001514 ORTHO05D005209 5.1e-56 222.2 206 50.5
Solyc10g054980.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 8.7e-56 221.5 210 49.5
DCAR_024739 Daucus carota HOM05D001514 ORTHO05D005209 1.5e-55 220.7 137 70.1
PGSC0003DMG400024425 Solanum tuberosum HOM05D001514 ORTHO05D005209 1.4e-53 214.2 169 55.6
CAN.G2532.1 Capsicum annuum HOM05D001514 ORTHO05D005209 2.0e-52 210.3 159 59.1
DCAR_026438 Daucus carota HOM05D001514 ORTHO05D005209 2.9e-51 206.5 138 65.9
Pp3c7_2780 Physcomitrium patens HOM05D001514 ORTHO05D005209 1.1e-50 204.5 204 43.6
Psat0s4474g0080 Pisum sativum HOM05D001514 ORTHO05D005209 1.4e-50 204.1 206 46.6
Sopen10g024920 Solanum pennellii HOM05D001514 ORTHO05D005209 2.4e-50 203.4 171 55.0
AagrBONN_evm.TU.Sc2ySwM_344.5098 Anthoceros agrestis HOM05D001514 ORTHO05D005209 3.2e-50 203.0 191 49.2
unitig_749.g14240 Utricularia gibba HOM05D001514 ORTHO05D005209 6.6e-48 195.3 146 63.0
PGSC0003DMG400040125 Solanum tuberosum HOM05D001514 ORTHO05D005209 3.3e-47 193.0 203 45.3
CAN.G299.3 Capsicum annuum HOM05D001514 ORTHO05D005209 4.8e-46 189.1 122 72.1
CBR_g11153 Chara braunii HOM05D001514 ORTHO05D005209 1.4e-45 187.6 215 38.6
Solyc10g055070.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.6e-44 183.3 163 52.1
CAN.G1774.14 Capsicum annuum HOM05D001514 ORTHO05D005209 2.2e-43 180.3 140 58.6
Solyc10g055010.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.2e-43 180.3 139 55.4
PGSC0003DMG400003348 Solanum tuberosum HOM05D001514 ORTHO05D005209 1.5e-39 167.5 126 60.3
Manes.15G009400 Manihot esculenta HOM05D001514 ORTHO05D005209 7.4e-39 165.2 117 69.2
MD02G1088400 Malus domestica HOM05D001514 ORTHO05D005209 2.8e-38 163.3 166 47.6
Solyc10g055150.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 4.8e-38 162.5 133 57.9
Sopen10g024960 Solanum pennellii HOM05D001514 ORTHO05D005209 6.2e-38 162.2 123 61.0
Solyc10g049550.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 5.8e-36 155.6 135 53.3
Solyc10g055130.2 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.2e-34 149.8 117 59.0
Sopen10g024890 Solanum pennellii HOM05D001514 ORTHO05D005209 8.2e-30 135.2 102 59.8
Sopen10g024880 Solanum pennellii HOM05D000004 ORTHO05D000002 2.4e-21 107.1 91 56.0
Sopen12g011120 Solanum pennellii HOM05D001514 ORTHO05D005209 2.6e-20 103.6 76 59.2
DCAR_024738 Daucus carota HOM05D001514 ORTHO05D005209 3.4e-20 103.2 76 60.5
Potri.005G126902 Populus trichocarpa HOM05D001514 ORTHO05D005209 2.2e-19 100.5 78 64.1
CAN.G1963.4 Capsicum annuum HOM05D001514 ORTHO05D005209 1.4e-18 97.8 132 39.4
Solyc10g055040.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.2e-18 96.7 139 36.7
Rhsim03G0228900 Rhododendron simsii HOM05D001514 ORTHO05D005209 3.0e-16 90.1 48 75.0
AT2G28020 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 9.1e-13 78.6 67 52.2
Oeu055661.2 Olea europaea HOM05D001514 ORTHO05D005209 4.5e-12 76.3 48 58.3
Cre11.g476900 Chlamydomonas reinhardtii HOM05D001514 ORTHO05D005209 1.0e-11 75.1 162 27.8
ECA233G2563 Erigeron canadensis HOM05D000517 ORTHO05D000751 1.3e-11 74.7 102 38.2
Solyc12g062270.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.9e-10 70.9 106 35.8
BcaC07g40291 Brassica carinata HOM05D001514 ORTHO05D005209 2.3e-08 63.9 49 65.3
C08p34050 Brassica napus HOM05D001514 ORTHO05D005209 2.3e-08 63.9 49 65.3
BolC8t51003H Brassica oleracea HOM05D001514 ORTHO05D005209 3.0e-08 63.5 48 66.7


User provided reference genes

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