Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund05880 Selenicereus undatus HOM05D001988 ORTHO05D004985 0.0e+00 1457.6 741 100.0
AUR62005788 Chenopodium quinoa HOM05D001988 ORTHO05D004985 2.8e-204 716.1 713 56.1
EL10Ac6g13205 Beta vulgaris HOM05D001988 ORTHO05D004985 6.5e-201 704.9 729 52.5
EL10Ac9g22126 Beta vulgaris HOM05D001988 ORTHO05D004985 5.4e-195 685.3 773 49.5
AUR62028773 Chenopodium quinoa HOM05D001988 ORTHO05D004985 2.4e-179 633.3 687 52.8
Ah.05g179340 Amaranthus hybridus HOM05D001988 ORTHO05D004985 3.2e-179 632.9 732 47.5
QL03p063402 Quercus lobata HOM05D001988 ORTHO05D004985 2.0e-178 630.2 745 49.0
QL03p064038 Quercus lobata HOM05D001988 ORTHO05D004985 2.0e-178 630.2 745 49.0
Cfa008981 Carpinus fangiana HOM05D001988 ORTHO05D004985 2.3e-177 626.7 750 48.7
Manes.01G185700 Manihot esculenta HOM05D001988 ORTHO05D004985 1.2e-175 620.9 766 47.0
Prupe.1G174900 Prunus persica HOM05D001988 ORTHO05D004985 1.2e-175 620.9 723 48.0
Eucgr.B03445 Eucalyptus grandis HOM05D001988 ORTHO05D004985 5.2e-174 615.5 733 48.7
Ciclev10030768m.g Citrus clementina HOM05D001988 ORTHO05D004985 3.7e-172 609.4 752 47.6
MD04G1025400 Malus domestica HOM05D001988 ORTHO05D004985 3.9e-169 599.4 725 47.9
Actinidia19875 Actinidia chinensis HOM05D001988 ORTHO05D004985 6.2e-167 592.0 720 46.2
Rhsim12G0063800 Rhododendron simsii HOM05D001988 ORTHO05D004985 8.9e-166 588.2 745 45.4
FAN21G2649 Fragaria x ananassa HOM05D001988 ORTHO05D004985 4.4e-165 585.9 730 47.0
ClCG11G010950 Citrullus lanatus HOM05D001988 ORTHO05D004985 7.5e-165 585.1 748 46.9
GSVIVG01019982001 Vitis vinifera HOM05D001988 ORTHO05D004985 4.9e-164 582.4 713 46.7
Cpa.g.sc128.24 Carica papaya HOM05D001988 ORTHO05D004985 8.3e-164 581.6 744 45.6
FAN25G3604 Fragaria x ananassa HOM05D001988 ORTHO05D006298 1.4e-163 580.9 733 46.9
CANSAT54G1389 Cannabis sativa HOM05D001988 ORTHO05D004985 1.9e-163 580.5 750 45.5
Haze_12013 Corylus avellana HOM05D001988 ORTHO05D004985 2.4e-163 580.1 869 41.7
FvH4_3g26291 Fragaria vesca HOM05D001988 ORTHO05D004985 2.4e-163 580.1 730 46.4
FAN11G2867 Fragaria x ananassa HOM05D001988 ORTHO05D006298 1.6e-162 577.4 730 46.3
MELO3C008752.2 Cucumis melo HOM05D001988 ORTHO05D004985 8.6e-161 571.6 756 45.6
Glyma.11G111300 Glycine max HOM05D001988 ORTHO05D004985 4.3e-160 569.3 760 44.5
Lj8A318G47 Lonicera japonica HOM05D001988 ORTHO05D004985 2.8e-159 566.6 731 45.3
PGR102G2417 Punica granatum HOM05D001988 ORTHO05D004985 3.6e-159 566.2 741 45.5
Phvul.011G039300 Phaseolus vulgaris HOM05D001988 ORTHO05D004985 3.1e-158 563.1 740 45.7
Duzib251G0871 Durio zibethinus HOM05D001988 ORTHO05D004985 4.0e-158 562.8 735 45.9
Thecc.02G346500 Theobroma cacao HOM05D001988 ORTHO05D004985 5.2e-158 562.4 743 45.9
CSS0030030 Camellia sinensis var. sinensis HOM05D001988 ORTHO05D004985 6.8e-158 562.0 752 45.3
vmacro01260 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 8.9e-158 561.6 753 45.3
Sc11g0001930 Simmondsia chinensis HOM05D001988 ORTHO05D004985 4.4e-157 559.3 746 44.6
Gohir.D05G304800 Gossypium hirsutum HOM05D001988 ORTHO05D004985 5.8e-157 558.9 735 44.4
Gorai.009G324500 Gossypium raimondii HOM05D001988 ORTHO05D004985 1.3e-156 557.8 735 44.4
Nn4g23157 Nelumbo nucifera HOM05D001988 ORTHO05D004985 1.9e-155 553.9 739 45.6
Sabra10G0129300 Salix brachista HOM05D001988 ORTHO05D004985 4.1e-155 552.7 782 43.5
VMungo1127G0715 Vigna mungo HOM05D001988 ORTHO05D004985 3.5e-154 549.7 740 44.7
Lalb_Chr14g0368981 Lupinus albus HOM05D001988 ORTHO05D004985 3.9e-153 546.2 738 44.6
vmacro01166 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 3.9e-153 546.2 737 43.8
Lj3g0010541 Lotus japonicus HOM05D001988 ORTHO05D004985 5.1e-153 545.8 736 44.0
TWI53G0339 Tripterygium wilfordii HOM05D001988 ORTHO05D004985 5.1e-153 545.8 745 45.2
CiPaw.05G135300 Carya illinoinensis HOM05D001988 ORTHO05D004985 9.6e-152 541.6 597 50.9
Sed0003814 Sechium edule HOM05D001988 ORTHO05D004985 6.2e-151 538.9 741 42.6
FAN25G3456 Fragaria x ananassa HOM05D001988 ORTHO05D004985 1.1e-150 538.1 698 46.4
THA.LOC104805159 Tarenaya hassleriana HOM05D001988 ORTHO05D004985 2.4e-150 537.0 736 42.8
arahy.Tifrunner.gnm1.ann1.8UN484 Arachis hypogaea HOM05D001988 ORTHO05D004985 5.2e-150 535.8 751 42.5
arahy.Tifrunner.gnm1.ann1.41IR6N Arachis hypogaea HOM05D001988 ORTHO05D004985 6.8e-150 535.4 751 42.3
Ca_20931_v3 Cicer arietinum L. HOM05D001988 ORTHO05D004985 1.2e-149 534.6 743 41.7
HanXRQChr05g0145521 Helianthus annuus HOM05D001988 ORTHO05D004985 2.6e-149 533.5 740 42.4
Gohir.A05G183600 Gossypium hirsutum HOM05D001988 ORTHO05D004985 6.4e-148 528.9 736 43.3
HanXRQChr09g0255131 Helianthus annuus HOM05D001988 ORTHO05D004985 6.4e-148 528.9 731 42.7
arahy.Tifrunner.gnm1.ann1.AY0VQT Arachis hypogaea HOM05D001988 ORTHO05D004985 2.4e-147 526.9 751 41.7
CsaV3_2G009530 Cucumis sativus L. HOM05D001988 ORTHO05D004985 1.6e-146 524.2 630 47.6
PGSC0003DMG401018705 Solanum tuberosum HOM05D001988 ORTHO05D004985 6.0e-146 522.3 718 44.0
Nitab4.5_0007649g0010 Nicotiana tabacum HOM05D001988 ORTHO05D004985 1.3e-145 521.2 744 42.3
Nitab4.5_0000428g0180 Nicotiana tabacum HOM05D001988 ORTHO05D004985 1.5e-144 517.7 744 42.5
SHI13475 Sapria himalayana HOM05D001988 ORTHO05D004985 1.5e-144 517.7 730 40.8
Sopen11g029230 Solanum pennellii HOM05D001988 ORTHO05D004985 1.9e-144 517.3 718 43.9
Peaxi162Scf00217g00713 Petunia axillaris HOM05D001988 ORTHO05D004985 2.5e-144 516.9 729 42.5
Medtr4g057650 Medicago truncatula HOM05D001988 ORTHO05D004985 3.3e-144 516.5 724 42.7
Lsat_1_v5_gn_5_156781 Lactuca sativa HOM05D001988 ORTHO05D004985 4.3e-144 516.2 718 42.6
Solyc11g071540.2 Solanum lycopersicum HOM05D001988 ORTHO05D004985 6.2e-143 512.3 718 43.7
Cc09_g03970 Coffea canephora HOM05D001988 ORTHO05D004985 1.4e-142 511.1 740 41.1
Lsat_1_v5_gn_8_100701 Lactuca sativa HOM05D001988 ORTHO05D004985 6.9e-142 508.8 716 41.8
Psat7g139200 Pisum sativum HOM05D001988 ORTHO05D004985 9.0e-142 508.4 736 42.7
MSTRG.27418 Avicennia marina HOM05D001988 ORTHO05D004985 2.0e-141 507.3 734 42.6
ECA248G0899 Erigeron canadensis HOM05D001988 ORTHO05D004985 3.4e-141 506.5 739 41.3
TPR.G27077 Trifolium pratense HOM05D001988 ORTHO05D004985 5.8e-141 505.8 719 42.0
Migut.F02100 Erythranthe guttata HOM05D001988 ORTHO05D004985 9.9e-141 505.0 727 42.6
ECA234G0637 Erigeron canadensis HOM05D001988 ORTHO05D004985 1.6e-138 497.7 722 41.8
CAN.G439.30 Capsicum annuum HOM05D001988 ORTHO05D004985 1.8e-137 494.2 718 42.3
Medtr4g071660 Medicago truncatula HOM05D001988 ORTHO05D004985 2.5e-136 490.3 716 41.6
Aa31LG2G7390 Aethionema arabicum HOM05D001988 ORTHO05D004985 7.6e-133 478.8 739 41.8
Sopen09g001990 Solanum pennellii HOM05D001988 ORTHO05D004985 2.2e-132 477.2 717 42.3
SalBow1G3615 Salvia bowleyana HOM05D001988 ORTHO05D004985 2.4e-131 473.8 713 41.2
RcHm_v2.0_Chr7g0220021 Rosa chinensis HOM05D001988 ORTHO05D004985 1.6e-130 471.1 575 48.5
SGA_v2.0_scaffold58G20462 Striga asiatica HOM05D001988 ORTHO05D004985 2.7e-130 470.3 732 41.3
RcHm_v2.0_Chr5g0048641 Rosa chinensis HOM05D001988 ORTHO05D004985 4.6e-130 469.5 570 48.8
Solyc09g007120.4 Solanum lycopersicum HOM05D001988 ORTHO05D004985 1.3e-129 468.0 718 41.6
TPR.G16225 Trifolium pratense HOM05D001988 ORTHO05D004985 3.3e-128 463.4 716 40.9
Thhalv10027666m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 2.1e-127 460.7 729 40.5
Lsat_1_v5_gn_4_55321 Lactuca sativa HOM05D001988 ORTHO05D004985 2.1e-127 460.7 716 39.7
Aqoxy1G01101 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 1.8e-126 457.6 741 38.3
Carub.0005s0183 Capsella rubella HOM05D001988 ORTHO05D004985 5.3e-126 456.1 737 40.2
DCAR_007151 Daucus carota HOM05D001988 ORTHO05D004985 6.9e-126 455.7 740 38.2
AL5G12570 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 1.5e-125 454.5 731 40.9
TAR629G1399 Trochodendron aralioides HOM05D001988 ORTHO05D004985 6.5e-124 449.1 529 47.1
AT2G02955 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 9.3e-123 445.3 729 40.2
AUR62008859 Chenopodium quinoa HOM05D001988 ORTHO05D004985 1.3e-121 441.4 433 58.2
Migut.I00421 Erythranthe guttata HOM05D001988 ORTHO05D004985 3.9e-121 439.9 717 38.8
Dinv16646 Davidia involucrata HOM05D001988 ORTHO05D004985 8.2e-119 432.2 429 53.6
Sp7g05500 Schrenkiella parvula HOM05D001988 ORTHO05D004985 1.7e-116 424.5 726 38.8
CDE07G0941 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 2.5e-115 420.6 628 40.6
BraA09t42140Z Brassica rapa HOM05D001988 ORTHO05D004985 1.6e-114 417.9 731 38.4
Hma1.2p1_0265F.1_g106750 Hydrangea macrophylla HOM05D001988 ORTHO05D004985 1.0e-113 415.2 453 48.8
unitig_60.g25620 Utricularia gibba HOM05D001988 ORTHO05D004985 6.7e-113 412.5 694 37.8
A09p68050 Brassica napus HOM05D001988 ORTHO05D004985 1.1e-112 411.8 730 37.9
BolC8t52776H Brassica oleracea HOM05D001988 ORTHO05D004985 8.2e-111 405.6 735 37.6
AL6G52060 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 2.4e-110 404.1 707 38.2
C08p52490 Brassica napus HOM05D001988 ORTHO05D004985 2.6e-109 400.6 735 37.4
Oeu037938.2 Olea europaea HOM05D001988 ORTHO05D004985 4.5e-109 399.8 519 47.4
BcaC07g42212 Brassica carinata HOM05D001988 ORTHO05D004985 1.3e-108 398.3 729 37.0
Medtr5g067430 Medicago truncatula HOM05D001988 ORTHO05D004985 1.3e-108 398.3 721 37.2
Eucgr.B03444 Eucalyptus grandis HOM05D001988 ORTHO05D004985 4.6e-106 389.8 502 46.6
PSO017G3571 Papaver somniferum HOM05D001988 ORTHO05D004985 4.6e-106 389.8 718 35.7
HPP92_021577 Vanilla planifolia HOM05D001988 ORTHO05D004985 7.9e-106 389.0 758 35.4
Zm00001eb284870 Zea mays HOM05D001988 ORTHO05D004985 5.1e-105 386.3 735 35.4
PSO063G4641 Papaver somniferum HOM05D001988 ORTHO05D004985 1.1e-104 385.2 705 35.0
SEGI_28471 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 1.5e-104 384.8 752 33.8
SEGI_17598 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 1.3e-103 381.7 754 33.2
MBI19_g09828_MAGBIO Magnolia biondii HOM05D001988 ORTHO05D004985 6.5e-100 369.4 555 41.3
Carub.0006s3640 Capsella rubella HOM05D001988 ORTHO05D004985 1.8e-94 351.3 707 35.6
Potri.010G169500 Populus trichocarpa HOM05D001988 ORTHO05D004985 6.5e-92 342.8 429 48.5
Hund25598 Selenicereus undatus HOM05D001988 ORTHO05D004985 1.2e-90 338.6 681 35.7
CARHR145370 Cardamine hirsuta HOM05D001988 ORTHO05D004985 3.0e-89 334.0 517 41.0
Pp3c9_8400 Physcomitrium patens HOM05D001988 ORTHO05D004985 1.3e-76 292.0 754 30.0
Atru.chr11.1785 Acer truncatum HOM05D001988 ORTHO05D004985 2.5e-75 287.7 356 48.9
Oeu007681.1 Olea europaea HOM05D001988 ORTHO05D004985 2.0e-72 278.1 326 49.4
Thhalv10004418m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 1.3e-71 275.4 400 42.2
COL.COLO4_23013 Corchorus olitorius HOM05D001988 ORTHO05D004985 1.6e-69 268.5 742 31.3
Mapoly0075s0087 Marchantia polymorpha HOM05D001988 ORTHO05D004985 1.7e-68 265.0 829 28.0
arahy.Tifrunner.gnm1.ann1.N3HM5N Arachis hypogaea HOM05D001988 ORTHO05D004985 1.0e-65 255.8 427 37.9
AagrBONN_evm.TU.Sc2ySwM_362.1334 Anthoceros agrestis HOM05D001988 ORTHO05D004985 5.9e-61 240.0 684 28.1
Hund25529 Selenicereus undatus HOM05D001988 ORTHO05D004985 1.7e-60 238.4 250 52.8
ATR0782G208 Amborella trichopoda HOM05D001988 ORTHO05D004985 7.5e-56 223.0 407 37.3
PGSC0003DMG400002020 Solanum tuberosum HOM05D001988 ORTHO05D004985 8.6e-52 209.5 199 54.3
Atru.chr11.1786 Acer truncatum HOM05D001988 ORTHO05D004985 1.2e-40 172.6 135 60.0
Aqoxy5G02833 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 1.5e-40 172.2 226 44.2
AagrBONN_evm.TU.Sc2ySwM_362.1335 Anthoceros agrestis HOM05D000001 ORTHO05D000003 3.8e-39 167.5 807 24.0
Aqoxy5G02832 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 1.6e-34 152.1 238 39.1
Medtr4g071850 Medicago truncatula HOM05D001988 ORTHO05D004985 1.9e-30 138.7 194 42.8
PSO513G0179 Papaver somniferum HOM05D001988 ORTHO05D004985 1.2e-29 136.0 540 24.8
Actinidia31897 Actinidia chinensis HOM05D001988 ORTHO05D004985 1.6e-29 135.6 215 40.9
RcHm_v2.0_Chr7g0220011 Rosa chinensis HOM05D001988 ORTHO05D004985 1.7e-28 132.1 84 69.0
RcHm_v2.0_Chr5g0048631 Rosa chinensis HOM05D001988 ORTHO05D004985 3.9e-28 131.0 84 67.9
SMO239G0039 Selaginella moellendorffii HOM05D001988 ORTHO05D004985 3.9e-28 131.0 145 46.2
Peaxi162Scf00342g00711 Petunia axillaris HOM05D001988 ORTHO05D004985 9.6e-27 126.3 511 26.0
CARHR212720 Cardamine hirsuta HOM05D001988 ORTHO05D004985 1.1e-25 122.9 336 31.0
AagrBONN_evm.TU.Sc2ySwM_117.2968 Anthoceros agrestis HOM05D001988 ORTHO05D004985 1.2e-24 119.4 223 35.0
Aqoxy5G02834 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 1.1e-22 112.8 107 49.5
CARHR145380 Cardamine hirsuta HOM05D001988 ORTHO05D004985 1.1e-22 112.8 204 36.3
AagrBONN_evm.TU.Sc2ySwM_369.75 Anthoceros agrestis HOM05D001988 ORTHO05D004985 5.3e-17 94.0 180 34.4
Os05g0352700 Oryza sativa ssp. japonica HOM05D001988 ORTHO05D004985 3.4e-16 91.3 190 33.7
EL10As5g23508 Beta vulgaris HOM05D001988 ORTHO05D004985 1.0e-12 79.7 68 57.4
Atru.chr11.1787 Acer truncatum HOM05D001988 ORTHO05D004985 2.5e-11 75.1 62 51.6
CARHR289080 Cardamine hirsuta HOM05D001988 ORTHO05D004985 7.4e-11 73.6 65 60.0
AL7G47160 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 9.6e-11 73.2 88 48.9
BcaC06g34029 Brassica carinata HOM05D001988 ORTHO05D004985 8.2e-10 70.1 76 51.3
CDE06G2098 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 8.2e-10 70.1 333 22.2
Peaxi162Scf00342g00712 Petunia axillaris HOM05D001988 ORTHO05D004985 8.2e-10 70.1 154 33.1
AT1G42615 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 2.4e-09 68.6 143 33.6
Cfa008983 Carpinus fangiana HOM05D001988 ORTHO05D004985 9.0e-09 66.6 128 35.9
BcaC07g42209 Brassica carinata HOM05D001988 ORTHO05D004985 1.3e-07 62.8 105 38.1
Carub.0005s0182 Capsella rubella HOM05D000082 ORTHO05D000038 5.5e-06 57.4 41 56.1
CBR_g30180 Chara braunii HOM05D001988 ORTHO05D004985 7.1e-06 57.0 66 39.4
Sp2g13990 Schrenkiella parvula HOM05D001988 ORTHO05D004985 9.3e-06 56.6 108 33.3


User provided reference genes

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