Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund03124 Selenicereus undatus HOM05D006900 ORTHO05D008651 9.0e-256 887.1 719 100.0
Ah.04g156910 Amaranthus hybridus HOM05D006900 ORTHO05D008651 1.5e-104 384.8 732 68.0
EL10Ac3g05503 Beta vulgaris HOM05D006900 ORTHO05D008651 1.8e-91 341.3 735 42.7
AUR62016204 Chenopodium quinoa HOM05D006900 ORTHO05D008651 8.6e-81 305.8 606 68.8
AUR62039284 Chenopodium quinoa HOM05D006900 ORTHO05D008651 1.1e-80 305.4 606 68.8
Gohir.A10G171600 Gossypium hirsutum HOM05D006900 ORTHO05D008651 4.6e-74 283.5 741 58.4
Gorai.011G199800 Gossypium raimondii HOM05D006900 ORTHO05D008651 3.9e-73 280.4 741 58.2
Gohir.D10G178700 Gossypium hirsutum HOM05D006900 ORTHO05D008651 2.5e-72 277.7 741 58.2
Sc15g0003210 Simmondsia chinensis HOM05D006900 ORTHO05D008651 1.2e-69 268.9 729 59.1
GSVIVG01034997001 Vitis vinifera HOM05D006900 ORTHO05D008651 3.4e-69 267.3 709 59.2
PGR004G2297 Punica granatum HOM05D006900 ORTHO05D008651 1.7e-68 265.0 604 64.6
TAR362G0296 Trochodendron aralioides HOM05D006900 ORTHO05D008651 2.4e-67 261.2 752 57.8
Peaxi162Scf00681g00223 Petunia axillaris HOM05D006900 ORTHO05D008651 3.2e-67 260.8 718 57.9
TPR.G16830 Trifolium pratense HOM05D006900 ORTHO05D008651 5.4e-67 260.0 682 59.4
COL.COLO4_34620 Corchorus olitorius HOM05D006900 ORTHO05D008651 2.7e-66 257.7 699 58.5
QL06p012004 Quercus lobata HOM05D006900 ORTHO05D008651 3.5e-66 257.3 606 65.5
Duzib212G0988 Durio zibethinus HOM05D006900 ORTHO05D008651 4.6e-66 256.9 721 57.3
Potri.010G145000 Populus trichocarpa HOM05D006900 ORTHO05D008651 7.8e-66 256.1 738 56.4
PGSC0003DMG400011531 Solanum tuberosum HOM05D006900 ORTHO05D008651 1.0e-65 255.8 746 56.2
CAN.G274.12 Capsicum annuum HOM05D006900 ORTHO05D008651 2.5e-64 251.1 700 58.0
Hma1.2p1_0013F.1_g008570 Hydrangea macrophylla HOM05D006900 ORTHO05D008651 4.3e-64 250.4 707 58.1
Nitab4.5_0004979g0030 Nicotiana tabacum HOM05D006900 ORTHO05D008651 4.3e-64 250.4 713 57.1
Actinidia13360 Actinidia chinensis HOM05D006900 ORTHO05D008651 5.6e-64 250.0 603 64.5
Solyc04g009020.4 Solanum lycopersicum HOM05D006900 ORTHO05D008651 7.3e-64 249.6 744 56.0
Sp3g15260 Schrenkiella parvula HOM05D006900 ORTHO05D008651 1.2e-63 248.8 657 60.1
Dinv15174 Davidia involucrata HOM05D006900 ORTHO05D008651 1.6e-63 248.4 613 63.5
Sabra10G0112000 Salix brachista HOM05D006900 ORTHO05D008651 1.6e-63 248.4 740 56.1
Sopen04g004200 Solanum pennellii HOM05D006900 ORTHO05D008651 1.6e-63 248.4 744 56.2
Thhalv10020271m.g Eutrema salsugineum HOM05D006900 ORTHO05D008651 2.8e-63 247.7 595 63.9
Manes.03G204600 Manihot esculenta HOM05D006900 ORTHO05D008651 4.7e-63 246.9 722 55.3
arahy.Tifrunner.gnm1.ann1.88EKIY Arachis hypogaea HOM05D006900 ORTHO05D008651 6.2e-63 246.5 746 55.9
Thecc.04G300100 Theobroma cacao HOM05D006900 ORTHO05D008651 6.2e-63 246.5 739 56.6
arahy.Tifrunner.gnm1.ann1.Z0RY6M Arachis hypogaea HOM05D006900 ORTHO05D008651 8.1e-63 246.1 732 57.0
Cfa015319 Carpinus fangiana HOM05D006900 ORTHO05D008651 2.3e-62 244.6 691 58.0
A05p32690 Brassica napus HOM05D006900 ORTHO05D008651 3.1e-62 244.2 654 59.6
Prupe.1G117800 Prunus persica HOM05D006900 ORTHO05D008651 3.1e-62 244.2 585 65.6
THA.LOC104820304 Tarenaya hassleriana HOM05D006900 ORTHO05D008651 6.8e-62 243.0 715 56.9
TWI09G0824 Tripterygium wilfordii HOM05D006900 ORTHO05D008651 6.8e-62 243.0 711 57.2
CARHR092290 Cardamine hirsuta HOM05D006900 ORTHO05D008651 1.2e-61 242.3 598 63.4
HanXRQChr13g0393421 Helianthus annuus HOM05D006900 ORTHO05D008651 1.2e-61 242.3 681 60.5
CSS0034541 Camellia sinensis var. sinensis HOM05D006900 ORTHO05D008651 2.6e-61 241.1 749 56.5
Haze_01304 Corylus avellana HOM05D006900 ORTHO05D008651 2.6e-61 241.1 676 60.1
Eucgr.H04042 Eucalyptus grandis HOM05D006900 ORTHO05D008651 2.6e-61 241.1 618 54.5
BraA05t22092Z Brassica rapa HOM05D006900 ORTHO05D008651 3.4e-61 240.7 710 56.5
Cc03_g00870 Coffea canephora HOM05D006900 ORTHO05D008651 3.4e-61 240.7 730 59.0
Aa31LG8G4070 Aethionema arabicum HOM05D006900 ORTHO05D008651 4.4e-61 240.4 597 63.1
BcaB06g25797 Brassica carinata HOM05D006900 ORTHO05D008651 4.4e-61 240.4 649 59.5
BcaC05g28835 Brassica carinata HOM05D006900 ORTHO05D008651 4.4e-61 240.4 711 56.1
BolC5t33686H Brassica oleracea HOM05D006900 ORTHO05D008651 4.4e-61 240.4 711 56.1
C05p49400 Brassica napus HOM05D006900 ORTHO05D008651 9.8e-61 239.2 710 56.3
Psat0s740g0280 Pisum sativum HOM05D006900 ORTHO05D008651 9.8e-61 239.2 593 63.9
Nn3g21725 Nelumbo nucifera HOM05D006900 ORTHO05D008651 1.3e-60 238.8 746 56.3
Lsat_1_v5_gn_6_18120 Lactuca sativa HOM05D006900 ORTHO05D008651 2.2e-60 238.0 709 58.1
MD13G1154800 Malus domestica HOM05D006900 ORTHO05D008651 2.2e-60 238.0 732 56.3
Lalb_Chr07g0182071 Lupinus albus HOM05D006900 ORTHO05D008651 3.7e-60 237.3 651 61.4
FvH4_4g19660 Fragaria vesca HOM05D006900 ORTHO05D008651 4.9e-60 236.9 581 64.7
FAN07G1219 Fragaria x ananassa HOM05D006900 ORTHO05D008651 4.9e-60 236.9 581 64.7
Carub.0003s1679 Capsella rubella HOM05D006900 ORTHO05D008651 6.4e-60 236.5 609 62.4
MBI18_g32026_MAGBIO Magnolia biondii HOM05D006900 ORTHO05D008651 6.4e-60 236.5 612 63.1
AL3G30020 Arabidopsis lyrata HOM05D006900 ORTHO05D008651 8.3e-60 236.1 609 61.9
Lj6A690T75 Lonicera japonica HOM05D006900 ORTHO05D008651 8.3e-60 236.1 639 60.6
ECA233G1261 Erigeron canadensis HOM05D006900 ORTHO05D008651 1.1e-59 235.7 580 65.9
FAN12G3178 Fragaria x ananassa HOM05D006900 ORTHO05D008651 1.1e-59 235.7 578 64.9
RcHm_v2.0_Chr4g0425111 Rosa chinensis HOM05D006900 ORTHO05D008651 1.1e-59 235.7 584 65.4
Ciclev10004521m.g Citrus clementina HOM05D006900 ORTHO05D008651 1.9e-59 235.0 678 58.1
ClCG05G006560 Citrullus lanatus HOM05D006900 ORTHO05D008651 4.1e-59 233.8 706 56.8
Glyma.07G240000 Glycine max HOM05D006900 ORTHO05D008651 5.4e-59 233.4 727 58.3
Medtr4g122060 Medicago truncatula HOM05D006900 ORTHO05D008651 5.4e-59 233.4 684 57.9
Nitab4.5_0010299g0060 Nicotiana tabacum HOM05D006900 ORTHO05D008651 5.4e-59 233.4 784 41.5
VMungo1215G0487 Vigna mungo HOM05D006900 ORTHO05D008651 7.1e-59 233.0 587 63.2
Migut.G00056 Erythranthe guttata HOM05D006900 ORTHO05D008651 9.2e-59 232.6 696 57.8
Lj4g0008712 Lotus japonicus HOM05D006900 ORTHO05D008651 9.2e-59 232.6 690 57.5
Rhsim02G0004000 Rhododendron simsii HOM05D006900 ORTHO05D008651 2.7e-58 231.1 743 37.7
CiPaw.02G075100 Carya illinoinensis HOM05D006900 ORTHO05D008651 7.8e-58 229.6 648 58.5
MELO3C006715.2 Cucumis melo HOM05D006900 ORTHO05D008651 7.8e-58 229.6 706 56.5
Glyma.17G033400 Glycine max HOM05D006900 ORTHO05D008651 7.8e-58 229.6 599 63.6
CsaV3_3G015170 Cucumis sativus L. HOM05D006900 ORTHO05D008651 1.3e-57 228.8 711 56.4
SGA_v2.0_scaffold104G30080 Striga asiatica HOM05D006900 ORTHO05D008651 1.3e-57 228.8 685 56.9
unitig_748.g8700 Utricularia gibba HOM05D006900 ORTHO05D008651 6.6e-57 226.5 571 64.4
Phvul.003G114100 Phaseolus vulgaris HOM05D006900 ORTHO05D008651 4.3e-56 223.8 606 62.4
Atru.chr4.3007 Acer truncatum HOM05D006900 ORTHO05D008651 5.6e-56 223.4 689 57.3
CANSAT64G2951 Cannabis sativa HOM05D006900 ORTHO05D008651 1.6e-55 221.9 668 57.5
MSTRG.10150 Avicennia marina HOM05D006900 ORTHO05D008651 2.8e-55 221.1 654 58.1
ATR0693G010 Amborella trichopoda HOM05D006900 ORTHO05D008651 8.1e-55 219.5 592 62.8
PSO357G0537 Papaver somniferum HOM05D006900 ORTHO05D008651 1.4e-54 218.8 595 62.9
PSO170G0176 Papaver somniferum HOM05D006900 ORTHO05D008651 2.3e-54 218.0 595 63.0
Aqoxy5G02843 Aquilegia oxysepala HOM05D006900 ORTHO05D008651 3.1e-54 217.6 593 62.6
Zm00001eb014810 Zea mays HOM05D006900 ORTHO05D008651 7.1e-51 206.5 591 62.4
CDE12G0762 Ceratophyllum demersum HOM05D006900 ORTHO05D008651 1.6e-50 205.3 589 61.6
vmacro15184 Vaccinium macrocarpon HOM05D006900 ORTHO05D008651 2.3e-49 201.4 742 54.2
Sed0008833 Sechium edule HOM05D006900 ORTHO05D008651 3.0e-49 201.1 596 61.1
DCAR_030472 Daucus carota HOM05D006900 ORTHO05D008651 1.1e-46 192.6 309 44.0
Hma1.2p1_0013F.1_g008580 Hydrangea macrophylla HOM05D006900 ORTHO05D008651 1.4e-46 192.2 260 45.8
Ca_21442_v3 Cicer arietinum L. HOM05D006900 ORTHO05D008651 1.8e-46 191.8 259 45.6
CDE01G0483 Ceratophyllum demersum HOM05D006900 ORTHO05D008651 2.9e-44 184.5 171 56.7
AT3G17040 Arabidopsis thaliana HOM05D006900 ORTHO05D008651 6.4e-44 183.3 184 50.0
SalBow8G4068 Salvia bowleyana HOM05D006900 ORTHO05D008651 4.2e-43 180.6 169 55.6
Os03g0308800 Oryza sativa ssp. japonica HOM05D006900 ORTHO05D008651 6.0e-42 176.8 168 53.0
CANSAT78G0722 Cannabis sativa HOM05D006900 ORTHO05D008651 1.1e-30 139.4 130 54.6
Cpa.g.sc9.62 Carica papaya HOM05D006900 ORTHO05D008651 1.1e-30 139.4 126 61.9
Mapoly0078s0010 Marchantia polymorpha HOM05D006900 ORTHO05D008651 3.4e-29 134.4 137 51.1
SEGI_12330 Sequoiadendron giganteum HOM05D006900 ORTHO05D008651 4.5e-29 134.0 595 55.8
Pp3c1_20310 Physcomitrium patens HOM05D006900 ORTHO05D008651 2.7e-26 124.8 139 48.2
Gohir.A10G171900 Gossypium hirsutum HOM05D006900 ORTHO05D008651 3.5e-26 124.4 143 55.2
CSS0028196 Camellia sinensis var. sinensis HOM05D006900 ORTHO05D008651 2.3e-25 121.7 81 74.1
CSS0035140 Camellia sinensis var. sinensis HOM05D006900 ORTHO05D008651 2.5e-24 118.2 81 71.6
AagrBONN_evm.TU.Sc2ySwM_368.516 Anthoceros agrestis HOM05D006900 ORTHO05D008651 9.6e-24 116.3 167 40.7
CBR_g12177 Chara braunii HOM05D006900 ORTHO05D008651 1.8e-22 112.1 137 45.3
SMO115G0152 Selaginella moellendorffii HOM05D006900 ORTHO05D008651 6.9e-22 110.2 137 48.9
Gohir.A10G171950 Gossypium hirsutum HOM05D006900 ORTHO05D008651 5.5e-19 100.5 112 45.5
MCO01G208 Micromonas commoda HOM05D006900 ORTHO05D008651 6.3e-15 87.0 138 37.0
Oeu032012.1 Olea europaea HOM05D006900 ORTHO05D008651 4.1e-14 84.3 92 55.4
Cre09.g416200 Chlamydomonas reinhardtii HOM05D006900 ORTHO05D008651 2.9e-12 78.2 134 36.6
Cpa.g.sc9.61 Carica papaya HOM05D006900 ORTHO05D008651 4.6e-10 70.9 198 32.8
Oeu032144.1 Olea europaea HOM05D006900 ORTHO05D008651 6.7e-09 67.0 96 40.6
PRCOL_00006040 Prasinoderma coloniale HOM05D001216 ORTHO05D005688 1.5e-08 65.9 149 30.9
SGA_v2.0_scaffold157G37400 Striga asiatica HOM05D006900 ORTHO05D008651 6.3e-07 60.5 117 35.0


User provided reference genes

Program Settings