Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund02531 Selenicereus undatus HOM05D000251 ORTHO05D007889 0.0e+00 1716.0 940 100.0
EL10Ac5g11229 Beta vulgaris HOM05D000251 ORTHO05D007889 0.0e+00 1157.9 875 71.2
AUR62036928 Chenopodium quinoa HOM05D000251 ORTHO05D007889 0.0e+00 1079.7 882 66.9
AUR62032169 Chenopodium quinoa HOM05D000251 ORTHO05D007889 6.8e-304 1047.3 865 65.8
Dinv36870 Davidia involucrata HOM05D000251 ORTHO05D007889 7.3e-290 1000.7 826 64.8
QL10p022316 Quercus lobata HOM05D000251 ORTHO05D007889 3.6e-289 998.4 873 61.9
Thecc.03G114900 Theobroma cacao HOM05D000251 ORTHO05D007889 4.1e-285 984.9 822 63.5
COL.COLO4_32187 Corchorus olitorius HOM05D000251 ORTHO05D007889 1.5e-282 976.5 818 63.3
Prupe.5G214300 Prunus persica HOM05D000251 ORTHO05D007889 2.5e-282 975.7 818 63.3
GSVIVG01008206001 Vitis vinifera HOM05D000251 ORTHO05D007889 2.6e-279 965.7 818 63.9
Sc10g0009620 Simmondsia chinensis HOM05D000251 ORTHO05D007889 2.2e-278 962.6 750 68.5
Cfa019845 Carpinus fangiana HOM05D000251 ORTHO05D007889 2.9e-278 962.2 928 58.0
Nn4g23656 Nelumbo nucifera HOM05D000251 ORTHO05D007889 5.4e-277 958.0 897 59.6
CiPaw.15G123200 Carya illinoinensis HOM05D000251 ORTHO05D007889 7.1e-277 957.6 856 60.7
Duzib205G0552 Durio zibethinus HOM05D000251 ORTHO05D007889 2.7e-276 955.7 832 62.0
Rhsim08G0149100 Rhododendron simsii HOM05D000251 ORTHO05D007889 3.9e-275 951.8 828 62.0
MD14G1219700 Malus domestica HOM05D000251 ORTHO05D007889 5.1e-275 951.4 842 62.0
CSS0040641 Camellia sinensis var. sinensis HOM05D000251 ORTHO05D007889 9.6e-274 947.2 861 60.0
Ciclev10018692m.g Citrus clementina HOM05D000251 ORTHO05D007889 4.0e-272 941.8 852 60.1
MD06G1209200 Malus domestica HOM05D000251 ORTHO05D007889 5.3e-272 941.4 820 62.7
TAR622G0769 Trochodendron aralioides HOM05D000251 ORTHO05D007889 6.9e-272 941.0 852 60.4
Lalb_Chr12g0197521 Lupinus albus HOM05D000251 ORTHO05D007889 5.8e-271 937.9 899 57.7
Actinidia31039 Actinidia chinensis HOM05D000251 ORTHO05D007889 2.2e-270 936.0 862 60.2
arahy.Tifrunner.gnm1.ann1.ESZ5GR Arachis hypogaea HOM05D000251 ORTHO05D007889 3.8e-270 935.3 913 56.6
arahy.Tifrunner.gnm1.ann1.MAJ7P0 Arachis hypogaea HOM05D000251 ORTHO05D007889 6.4e-270 934.5 863 59.3
PGR044G2008 Punica granatum HOM05D000251 ORTHO05D007889 6.4e-270 934.5 835 61.4
TWI81G0067 Tripterygium wilfordii HOM05D000251 ORTHO05D007889 1.4e-269 933.3 842 62.4
Ca_02522_v3 Cicer arietinum L. HOM05D000251 ORTHO05D007889 1.7e-267 926.4 851 59.5
Gorai.003G106300 Gossypium raimondii HOM05D000251 ORTHO05D007889 1.7e-267 926.4 840 60.2
Gohir.D03G100900 Gossypium hirsutum HOM05D000251 ORTHO05D007889 3.9e-267 925.2 838 59.9
Gohir.A03G074400 Gossypium hirsutum HOM05D000251 ORTHO05D007889 1.5e-266 923.3 924 56.1
Lj4g0022759 Lotus japonicus HOM05D000251 ORTHO05D007889 1.5e-266 923.3 866 58.4
Cc04_g07720 Coffea canephora HOM05D000251 ORTHO05D007889 5.6e-266 921.4 826 60.5
Medtr4g112420 Medicago truncatula HOM05D000251 ORTHO05D007889 1.3e-265 920.2 898 56.6
Psat4g045640 Pisum sativum HOM05D000251 ORTHO05D007889 2.1e-265 919.5 853 59.4
CsaV3_1G003490 Cucumis sativus L. HOM05D000251 ORTHO05D007889 3.6e-265 918.7 863 58.7
Ah.02g114420 Amaranthus hybridus HOM05D000251 ORTHO05D007889 6.2e-265 917.9 763 65.3
Lj9C433G11 Lonicera japonica HOM05D000251 ORTHO05D007889 1.8e-264 916.4 838 59.7
RcHm_v2.0_Chr7g0184311 Rosa chinensis HOM05D000251 ORTHO05D007889 2.4e-264 916.0 861 58.8
ClCG06G015150 Citrullus lanatus HOM05D000251 ORTHO05D007889 4.0e-264 915.2 857 58.1
Atru.chr9.705 Acer truncatum HOM05D000251 ORTHO05D007889 5.3e-264 914.8 865 58.4
Potri.012G058100 Populus trichocarpa HOM05D000251 ORTHO05D007889 2.6e-263 912.5 901 56.6
CANSAT80G2803 Cannabis sativa HOM05D000251 ORTHO05D007889 5.8e-263 911.4 832 60.6
VMungo1215G2774 Vigna mungo HOM05D000251 ORTHO05D007889 2.9e-262 909.1 905 55.8
Glyma.17G123700 Glycine max HOM05D000251 ORTHO05D007889 6.4e-262 907.9 855 57.9
Glyma.05G015200 Glycine max HOM05D000251 ORTHO05D007889 2.4e-261 906.0 869 57.0
FAN18G2230 Fragaria x ananassa HOM05D000251 ORTHO05D007889 4.2e-261 905.2 869 57.8
Nitab4.5_0004342g0020 Nicotiana tabacum HOM05D000251 ORTHO05D007889 2.1e-260 902.9 865 59.1
Sed0011411 Sechium edule HOM05D000251 ORTHO05D007889 4.6e-260 901.7 915 55.1
Nitab4.5_0000646g0050 Nicotiana tabacum HOM05D000251 ORTHO05D007889 2.3e-259 899.4 825 60.6
Sabra12G0041800 Salix brachista HOM05D000251 ORTHO05D007889 5.1e-259 898.3 858 56.9
FvH4_5g12911 Fragaria vesca HOM05D000251 ORTHO05D007889 3.7e-257 892.1 875 56.8
Aqoxy3G00409 Aquilegia oxysepala HOM05D000251 ORTHO05D007889 1.4e-256 890.2 812 59.6
HanXRQChr05g0157761 Helianthus annuus HOM05D000251 ORTHO05D007889 3.1e-256 889.0 882 56.3
Peaxi162Scf00017g03036 Petunia axillaris HOM05D000251 ORTHO05D007889 3.1e-256 889.0 873 57.8
Haze_18572 Corylus avellana HOM05D000251 ORTHO05D007889 5.3e-256 888.3 824 59.3
AT5G23080 Arabidopsis thaliana HOM05D000251 ORTHO05D007889 5.8e-255 884.8 807 59.4
TPR.G2793 Trifolium pratense HOM05D000251 ORTHO05D007889 1.3e-254 883.6 875 55.9
FAN13G2548 Fragaria x ananassa HOM05D000251 ORTHO05D000414 2.9e-254 882.5 879 56.3
Solyc03g114410.3 Solanum lycopersicum HOM05D000251 ORTHO05D007889 5.5e-253 878.2 855 57.2
AL6G34270 Arabidopsis lyrata HOM05D000251 ORTHO05D007889 1.2e-252 877.1 866 56.5
Sopen03g033510 Solanum pennellii HOM05D000251 ORTHO05D007889 4.6e-252 875.2 838 57.5
Carub.0006s2087 Capsella rubella HOM05D000251 ORTHO05D007889 1.1e-250 870.5 868 55.4
DCAR_015126 Daucus carota HOM05D000251 ORTHO05D007889 1.5e-250 870.2 852 57.9
Eucgr.K02644 Eucalyptus grandis HOM05D000251 ORTHO05D007889 2.5e-250 869.4 809 60.0
CAN.G781.3 Capsicum annuum HOM05D000251 ORTHO05D007889 4.3e-250 868.6 906 54.6
Lsat_1_v5_gn_5_24161 Lactuca sativa HOM05D000251 ORTHO05D007889 1.3e-249 867.1 877 56.7
FAN18G3790 Fragaria x ananassa HOM05D000251 ORTHO05D007889 3.7e-249 865.5 953 52.9
Manes.05G117300 Manihot esculenta HOM05D000251 ORTHO05D007889 3.7e-249 865.5 751 62.3
MELO3C017274.2 Cucumis melo HOM05D000251 ORTHO05D007889 4.1e-248 862.1 913 54.2
Sp2g24040 Schrenkiella parvula HOM05D000251 ORTHO05D007889 2.0e-247 859.8 885 54.9
THA.LOC104819385 Tarenaya hassleriana HOM05D000251 ORTHO05D007889 2.0e-247 859.8 813 58.2
ECA246G2449 Erigeron canadensis HOM05D000251 ORTHO05D007889 2.9e-246 855.9 829 57.8
Migut.G01282 Erythranthe guttata HOM05D000251 ORTHO05D007889 1.4e-245 853.6 823 57.8
Aa31LG11G2570 Aethionema arabicum HOM05D000251 ORTHO05D007889 3.6e-244 849.0 815 57.5
A03p46430 Brassica napus HOM05D000251 ORTHO05D007889 1.0e-243 847.4 820 57.0
vmacro17646 Vaccinium macrocarpon HOM05D000251 ORTHO05D007889 1.0e-243 847.4 932 52.8
BraA03t13769Z Brassica rapa HOM05D000251 ORTHO05D007889 1.3e-243 847.0 888 54.2
Thhalv10003608m.g Eutrema salsugineum HOM05D000251 ORTHO05D007889 5.7e-242 841.6 890 53.8
C07p44450 Brassica napus HOM05D000251 ORTHO05D007889 3.1e-240 835.9 884 53.6
BolC7t44966H Brassica oleracea HOM05D000251 ORTHO05D007889 4.1e-240 835.5 884 53.4
SGA_v2.0_scaffold283G46981 Striga asiatica HOM05D000251 ORTHO05D007889 1.0e-238 830.9 816 56.6
BcaC04g23479 Brassica carinata HOM05D000251 ORTHO05D007889 1.3e-238 830.5 831 56.3
BolC9t53705H Brassica oleracea HOM05D000251 ORTHO05D007889 1.3e-238 830.5 831 56.3
A09p07070 Brassica napus HOM05D000251 ORTHO05D007889 6.7e-235 818.1 849 54.8
BraA09t36355Z Brassica rapa HOM05D000251 ORTHO05D007889 1.1e-234 817.4 843 55.0
C09p07920 Brassica napus HOM05D000251 ORTHO05D007889 2.0e-234 816.6 831 55.7
PSO017G5760 Papaver somniferum HOM05D000251 ORTHO05D007889 1.4e-229 800.4 866 53.8
Rhsim08G0139200 Rhododendron simsii HOM05D000251 ORTHO05D007889 1.2e-228 797.3 704 60.9
PSO478G4362 Papaver somniferum HOM05D000251 ORTHO05D007889 7.9e-228 794.7 895 52.8
Cpa.g.sc13.78 Carica papaya HOM05D000251 ORTHO05D007889 3.3e-226 789.3 747 58.5
BcaB04g19889 Brassica carinata HOM05D000251 ORTHO05D007889 1.1e-224 784.3 884 52.9
Phvul.003G179400 Phaseolus vulgaris HOM05D000251 ORTHO05D007889 1.6e-220 770.4 827 52.4
ATR0723G093 Amborella trichopoda HOM05D000251 ORTHO05D007889 5.2e-219 765.4 810 53.0
Os06g0489200 Oryza sativa ssp. japonica HOM05D000251 ORTHO05D007889 2.4e-216 756.5 809 54.4
SalBow2G1753 Salvia bowleyana HOM05D000251 ORTHO05D007889 4.2e-213 745.7 899 50.8
CDE08G0099 Ceratophyllum demersum HOM05D000251 ORTHO05D007889 8.8e-211 738.0 914 47.5
unitig_736.g22471 Utricularia gibba HOM05D000251 ORTHO05D007889 1.3e-209 734.2 812 52.5
AagrBONN_evm.TU.Sc2ySwM_344.5190 Anthoceros agrestis HOM05D000251 ORTHO05D007889 2.4e-155 553.9 871 42.8
Nn039s41709 Nelumbo nucifera HOM05D000251 ORTHO05D007889 1.6e-151 541.2 506 58.3
Pp3c6_280 Physcomitrium patens HOM05D000251 ORTHO05D007889 1.6e-148 531.2 866 41.8
SMO358G0348 Selaginella moellendorffii HOM05D000251 ORTHO05D007889 1.8e-147 527.7 869 41.2
Mapoly0043s0012 Marchantia polymorpha HOM05D000251 ORTHO05D007889 4.9e-145 519.6 841 41.4
CARHR190450 Cardamine hirsuta HOM05D000251 ORTHO05D007889 2.2e-129 467.6 590 47.8
HPP92_003115 Vanilla planifolia HOM05D000251 ORTHO05D007889 3.4e-122 443.7 672 43.6
SEGI_18733 Sequoiadendron giganteum HOM05D000251 ORTHO05D007889 1.8e-115 421.4 448 52.9
Hma1.2p1_0595F.1_g186110 Hydrangea macrophylla HOM05D000251 ORTHO05D007889 7.2e-112 409.5 353 57.8
CBR_g57132 Chara braunii HOM05D000251 ORTHO05D007889 1.2e-90 339.0 1023 30.2
Hma1.2p1_0595F.1_g186100 Hydrangea macrophylla HOM05D000251 ORTHO05D007889 7.2e-88 329.7 236 73.3
Zm00001eb382170 Zea mays HOM05D000251 ORTHO05D007889 9.5e-88 329.3 508 43.9
MCO14G468 Micromonas commoda HOM05D000251 ORTHO05D007889 8.9e-62 243.0 725 29.5
Actinidia16061 Actinidia chinensis HOM05D000251 ORTHO05D007889 4.4e-45 187.6 201 54.2
Ah.02g114430 Amaranthus hybridus HOM05D000169 ORTHO05D000542 1.7e-44 185.7 106 84.0
SHI18972 Sapria himalayana HOM05D000251 ORTHO05D007889 4.6e-42 177.6 107 78.5
Cre13.g568700 Chlamydomonas reinhardtii HOM05D000251 ORTHO05D007889 7.8e-42 176.8 353 35.7
BcaC06g33188 Brassica carinata HOM05D000251 ORTHO05D007889 3.1e-38 164.9 272 44.1
Psat4g067080 Pisum sativum HOM05D000251 ORTHO05D007889 6.2e-31 140.6 247 40.5
Actinidia16060 Actinidia chinensis HOM05D000251 ORTHO05D007889 4.5e-29 134.4 150 50.0
CiPaw.15G123400 Carya illinoinensis HOM05D000251 ORTHO05D007889 4.9e-28 131.0 96 70.8
Cfa026338 Carpinus fangiana HOM05D000251 ORTHO05D007889 7.4e-24 117.1 758 23.6
GSVIVG01008210001 Vitis vinifera HOM05D000251 ORTHO05D007889 7.6e-21 107.1 73 72.6
Rhsim08G0139300 Rhododendron simsii HOM05D000251 ORTHO05D007889 5.3e-14 84.3 162 38.9
Hma1.2p1_0690F.1_g203840 Hydrangea macrophylla HOM05D000251 ORTHO05D007889 1.1e-11 76.6 46 78.3
Pp3c17_14220 Physcomitrium patens HOM05D005511 ORTHO05D006616 7.4e-08 63.9 62 45.2
CsaV3_5G010440 Cucumis sativus L. HOM05D005511 ORTHO05D006616 1.7e-07 62.8 95 36.8
Atru.chr7.2702 Acer truncatum HOM05D005511 ORTHO05D006616 2.8e-07 62.0 89 34.8
Glyma.12G151100 Glycine max HOM05D005511 ORTHO05D006616 4.8e-07 61.2 91 36.3
Glyma.17G079400 Glycine max HOM05D005511 ORTHO05D006616 4.8e-07 61.2 91 36.3
MELO3C003615.2 Cucumis melo HOM05D005511 ORTHO05D006616 8.2e-07 60.5 95 36.8
MELO3C018377.2 Cucumis melo HOM05D005511 ORTHO05D006616 1.4e-06 59.7 95 35.8
Dinv37487 Davidia involucrata HOM05D005511 ORTHO05D006616 1.4e-06 59.7 89 37.1
Ciclev10014516m.g Citrus clementina HOM05D005511 ORTHO05D006616 1.8e-06 59.3 89 36.0
MD15G1105800 Malus domestica HOM05D005511 ORTHO05D006616 1.8e-06 59.3 88 37.5
Psat5g176520 Pisum sativum HOM05D005511 ORTHO05D006616 1.8e-06 59.3 89 37.1
Sabra18G0005200 Salix brachista HOM05D005511 ORTHO05D006616 1.8e-06 59.3 75 42.7
CANSAT25G2351 Cannabis sativa HOM05D005511 ORTHO05D006616 2.4e-06 58.9 91 37.4
MD08G1126000 Malus domestica HOM05D005511 ORTHO05D006616 2.4e-06 58.9 88 37.5
CBR_g29483 Chara braunii HOM05D000785 ORTHO05D006616 3.1e-06 58.5 67 40.3
Potri.006G279800 Populus trichocarpa HOM05D005511 ORTHO05D006616 3.1e-06 58.5 75 42.7
arahy.Tifrunner.gnm1.ann1.Q5NSRJ Arachis hypogaea HOM05D005511 ORTHO05D006616 4.1e-06 58.2 89 39.3
arahy.Tifrunner.gnm1.ann1.V3D0DH Arachis hypogaea HOM05D005511 ORTHO05D006616 4.1e-06 58.2 89 39.3
MSTRG.966 Avicennia marina HOM05D005511 ORTHO05D006616 4.1e-06 58.2 64 39.1
Sabra06G0216800 Salix brachista HOM05D005511 ORTHO05D006616 4.1e-06 58.2 64 45.3
Ca_09096_v3 Cicer arietinum L. HOM05D005511 ORTHO05D006616 5.3e-06 57.8 89 37.1
Eucgr.H04509 Eucalyptus grandis HOM05D005511 ORTHO05D006616 5.3e-06 57.8 89 37.1
vmacro03505 Vaccinium macrocarpon HOM05D005511 ORTHO05D006616 5.3e-06 57.8 85 38.8
Lalb_Chr25g0287701 Lupinus albus HOM05D005511 ORTHO05D006616 6.9e-06 57.4 89 38.2
QL12p025629 Quercus lobata HOM05D005511 ORTHO05D006616 9.1e-06 57.0 91 35.2
HPP92_005904 Vanilla planifolia HOM05D005511 ORTHO05D006616 9.1e-06 57.0 62 41.9


User provided reference genes

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