Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund02186 Selenicereus undatus HOM05D005363 ORTHO05D006607 0.0e+00 1777.3 936 100.0
EL10Ac4g08052 Beta vulgaris HOM05D005363 ORTHO05D006607 2.9e-307 1058.5 794 73.2
Sc03g0009580 Simmondsia chinensis HOM05D005363 ORTHO05D006607 5.7e-295 1017.7 748 75.8
CiPaw.11G177000 Carya illinoinensis HOM05D005363 ORTHO05D006607 9.2e-293 1010.4 754 71.6
TAR629G3355 Trochodendron aralioides HOM05D005363 ORTHO05D006607 7.3e-290 1000.7 754 72.0
Thecc.07G070700 Theobroma cacao HOM05D005363 ORTHO05D006607 1.0e-288 996.9 756 72.5
CANSAT11G0579 Cannabis sativa HOM05D005363 ORTHO05D006607 4.0e-288 995.0 750 71.5
CSS0003917 Camellia sinensis var. sinensis HOM05D005363 ORTHO05D006607 2.0e-287 992.6 750 72.8
Sabra16G0268700 Salix brachista HOM05D005363 ORTHO05D006607 2.4e-285 985.7 724 73.3
ClCG11G018480 Citrullus lanatus HOM05D005363 ORTHO05D006607 2.0e-284 982.6 726 72.5
Manes.15G082900 Manihot esculenta HOM05D005363 ORTHO05D006607 3.5e-284 981.9 754 71.4
GSVIVG01014441001 Vitis vinifera HOM05D005363 ORTHO05D006607 1.0e-283 980.3 753 72.2
COL.COLO4_09485 Corchorus olitorius HOM05D005363 ORTHO05D006607 2.3e-283 979.2 749 72.9
Ciclev10007579m.g Citrus clementina HOM05D005363 ORTHO05D006607 1.1e-282 976.9 755 70.3
QL08p017669 Quercus lobata HOM05D005363 ORTHO05D006607 4.3e-282 974.9 806 66.4
Sabra16G0270900 Salix brachista HOM05D005363 ORTHO05D006607 4.7e-281 971.5 670 75.8
Potri.001G407300 Populus trichocarpa HOM05D005363 ORTHO05D006607 8.9e-280 967.2 754 70.4
Cpa.g.sc12.44 Carica papaya HOM05D005363 ORTHO05D006607 2.6e-279 965.7 721 72.1
Duzib170G0704 Durio zibethinus HOM05D005363 ORTHO05D006607 2.6e-279 965.7 754 71.9
CsaV3_3G044350 Cucumis sativus L. HOM05D005363 ORTHO05D006607 7.5e-279 964.1 690 74.1
Sed0012869 Sechium edule HOM05D005363 ORTHO05D006607 1.4e-277 959.9 721 71.2
Prupe.4G191100 Prunus persica HOM05D005363 ORTHO05D006607 3.2e-277 958.7 750 69.2
Actinidia35283 Actinidia chinensis HOM05D005363 ORTHO05D006607 7.1e-277 957.6 719 72.2
MD11G1235900 Malus domestica HOM05D005363 ORTHO05D006607 1.6e-276 956.4 751 70.0
Oeu009902.1 Olea europaea HOM05D005363 ORTHO05D006607 1.6e-276 956.4 722 72.2
MSTRG.5819 Avicennia marina HOM05D005363 ORTHO05D006607 2.1e-276 956.1 759 70.1
AUR62029306 Chenopodium quinoa HOM05D005363 ORTHO05D006607 8.6e-275 950.7 801 65.7
Dinv08347 Davidia involucrata HOM05D005363 ORTHO05D006607 3.3e-274 948.7 773 69.6
SalBow3G2312 Salvia bowleyana HOM05D005363 ORTHO05D006607 3.3e-274 948.7 821 64.7
Glyma.12G219100 Glycine max HOM05D005363 ORTHO05D006607 9.5e-274 947.2 744 69.8
Hma1.2p1_1176F.1_g264200 Hydrangea macrophylla HOM05D005363 ORTHO05D006607 1.2e-273 946.8 768 67.6
Medtr2g081100 Medicago truncatula HOM05D005363 ORTHO05D006607 4.7e-273 944.9 746 70.6
vmacro09564 Vaccinium macrocarpon HOM05D005363 ORTHO05D006607 4.7e-273 944.9 716 72.2
Nn1g03887 Nelumbo nucifera HOM05D005363 ORTHO05D006607 6.8e-272 941.0 749 70.1
MD03G1218100 Malus domestica HOM05D005363 ORTHO05D006607 2.0e-271 939.5 751 68.8
ECA240G2604 Erigeron canadensis HOM05D005363 ORTHO05D006607 4.4e-271 938.3 752 69.5
Migut.J00972 Erythranthe guttata HOM05D005363 ORTHO05D006607 1.4e-269 933.3 719 70.4
arahy.Tifrunner.gnm1.ann1.42XSYF Arachis hypogaea HOM05D005363 ORTHO05D006607 2.4e-269 932.6 747 70.1
Gorai.009G430700 Gossypium raimondii HOM05D005363 ORTHO05D006607 4.1e-269 931.8 755 69.0
Psat2g184560 Pisum sativum HOM05D005363 ORTHO05D006607 4.1e-269 931.8 741 69.6
RcHm_v2.0_Chr5g0036071 Rosa chinensis HOM05D005363 ORTHO05D006607 4.1e-269 931.8 750 68.7
PSO832G2870 Papaver somniferum HOM05D005363 ORTHO05D006607 5.4e-269 931.4 757 68.7
arahy.Tifrunner.gnm1.ann1.3P80NP Arachis hypogaea HOM05D005363 ORTHO05D006607 7.1e-269 931.0 715 70.5
Lsat_1_v5_gn_9_95600 Lactuca sativa HOM05D005363 ORTHO05D006607 9.2e-269 930.6 742 70.5
Gohir.D05G362100 Gossypium hirsutum HOM05D005363 ORTHO05D006607 1.2e-268 930.2 755 69.0
HanXRQChr03g0077211 Helianthus annuus HOM05D005363 ORTHO05D006607 7.8e-268 927.5 755 68.2
SGA_v2.0_scaffold13G06767 Striga asiatica HOM05D005363 ORTHO05D006607 1.3e-267 926.8 731 68.3
PGR083G1158 Punica granatum HOM05D005363 ORTHO05D006607 2.3e-267 926.0 723 68.3
Phvul.005G085700 Phaseolus vulgaris HOM05D005363 ORTHO05D006607 2.5e-266 922.5 713 70.1
Lalb_Chr25g0286791 Lupinus albus HOM05D005363 ORTHO05D006607 3.3e-266 922.2 751 68.3
PSO210G7030 Papaver somniferum HOM05D005363 ORTHO05D006607 5.6e-266 921.4 757 68.2
MBI15_g19746_MAGBIO Magnolia biondii HOM05D005363 ORTHO05D006607 2.0e-263 912.9 668 71.1
Aqoxy1G03881 Aquilegia oxysepala HOM05D005363 ORTHO05D006607 4.4e-263 911.8 721 69.5
Haze_09533 Corylus avellana HOM05D005363 ORTHO05D006607 9.9e-263 910.6 834 62.8
Lj3g0015043 Lotus japonicus HOM05D005363 ORTHO05D006607 1.3e-262 910.2 743 67.2
AT5G54260 Arabidopsis thaliana HOM05D005363 ORTHO05D006607 3.2e-261 905.6 678 71.2
Lj8C160T16 Lonicera japonica HOM05D005363 ORTHO05D006607 3.2e-261 905.6 705 71.1
Aa31LG3G10220 Aethionema arabicum HOM05D005363 ORTHO05D006607 5.4e-261 904.8 711 68.6
Sp6g16300 Schrenkiella parvula HOM05D005363 ORTHO05D006607 5.4e-261 904.8 685 70.7
CAN.G824.3 Capsicum annuum HOM05D005363 ORTHO05D006607 1.0e-259 900.6 704 70.3
TPR.G32857 Trifolium pratense HOM05D005363 ORTHO05D006607 1.3e-259 900.2 654 72.2
FAN21G3123 Fragaria x ananassa HOM05D005363 ORTHO05D006607 1.7e-259 899.8 713 66.6
Thhalv10012804m.g Eutrema salsugineum HOM05D005363 ORTHO05D006607 2.5e-258 896.0 683 70.9
BcaC04g20356 Brassica carinata HOM05D005363 ORTHO05D006607 3.3e-258 895.6 679 70.5
Carub.0008s1460 Capsella rubella HOM05D005363 ORTHO05D006607 1.6e-257 893.3 646 73.1
CARHR267540 Cardamine hirsuta HOM05D005363 ORTHO05D006607 1.6e-257 893.3 682 70.4
FAN11G3021 Fragaria x ananassa HOM05D005363 ORTHO05D006607 2.1e-257 892.9 750 66.7
BolC9t57330H Brassica oleracea HOM05D005363 ORTHO05D006607 1.1e-256 890.6 686 69.5
FvH4_3g21040 Fragaria vesca HOM05D005363 ORTHO05D006607 1.4e-256 890.2 750 66.4
BraA10t43250Z Brassica rapa HOM05D005363 ORTHO05D006607 2.4e-256 889.4 684 70.0
HPP92_026561 Vanilla planifolia HOM05D005363 ORTHO05D006607 2.4e-256 889.4 719 66.8
BcaB08g35781 Brassica carinata HOM05D005363 ORTHO05D006607 3.1e-256 889.0 682 70.4
RhsimUnG0258300 Rhododendron simsii HOM05D005363 ORTHO05D006607 2.0e-255 886.3 693 67.5
Gohir.D01G056400 Gossypium hirsutum HOM05D005363 ORTHO05D006607 4.9e-254 881.7 733 68.2
Sopen09g004090 Solanum pennellii HOM05D005363 ORTHO05D006607 1.9e-253 879.8 611 73.8
ATR0693G020 Amborella trichopoda HOM05D005363 ORTHO05D006607 1.0e-251 874.0 704 66.8
DCAR_018424 Daucus carota HOM05D005363 ORTHO05D006607 1.8e-251 873.2 663 72.9
C09p44570 Brassica napus HOM05D005363 ORTHO05D006607 5.1e-251 871.7 687 68.0
FAN25G3415 Fragaria x ananassa HOM05D005363 ORTHO05D006607 1.5e-250 870.2 750 65.3
A10p11550 Brassica napus HOM05D005363 ORTHO05D006607 1.6e-249 866.7 689 67.5
AL8G29590 Arabidopsis lyrata HOM05D005363 ORTHO05D006607 1.8e-248 863.2 733 67.5
Peaxi162Scf00290g00111 Petunia axillaris HOM05D005363 ORTHO05D006607 5.3e-248 861.7 655 72.7
HPP92_026534 Vanilla planifolia HOM05D005363 ORTHO05D006607 2.2e-246 856.3 717 65.0
Cc06_g05460 Coffea canephora HOM05D005363 ORTHO05D006607 1.4e-245 853.6 510 81.2
Gorai.002G076500 Gossypium raimondii HOM05D005363 ORTHO05D006607 3.2e-245 852.4 756 65.5
Os04g0635900 Oryza sativa ssp. japonica HOM05D005363 ORTHO05D006607 9.3e-245 850.9 715 64.2
THA.LOC104813315 Tarenaya hassleriana HOM05D005363 ORTHO05D006607 1.6e-244 850.1 506 80.6
unitig_8.g4146 Utricularia gibba HOM05D005363 ORTHO05D006607 2.7e-244 849.4 692 66.0
Zm00001eb069270 Zea mays HOM05D005363 ORTHO05D006607 2.1e-241 839.7 716 64.5
VMungo1080G1535 Vigna mungo HOM05D005363 ORTHO05D006607 1.1e-237 827.4 503 79.3
SHI33827 Sapria himalayana HOM05D005363 ORTHO05D006607 4.6e-236 822.0 716 63.1
AUR62015595 Chenopodium quinoa HOM05D005363 ORTHO05D006607 5.1e-235 818.5 689 65.5
Gohir.A04G025700 Gossypium hirsutum HOM05D005363 ORTHO05D006607 3.3e-234 815.8 757 62.9
MELO3C018187.2 Cucumis melo HOM05D005363 ORTHO05D006607 5.5e-229 798.5 701 64.3
Mapoly0023s0117 Marchantia polymorpha HOM05D005363 ORTHO05D006607 1.9e-213 746.9 724 56.8
Gohir.A04G026000 Gossypium hirsutum HOM05D005363 ORTHO05D006607 9.4e-213 744.6 567 72.0
Pp3c24_2350 Physcomitrium patens HOM05D005363 ORTHO05D006607 8.8e-211 738.0 509 69.2
FAN16G0276 Fragaria x ananassa HOM05D005363 ORTHO05D006607 5.7e-210 735.3 626 65.2
AagrBONN_evm.TU.Sc2ySwM_117.2240 Anthoceros agrestis HOM05D005363 ORTHO05D006607 1.7e-206 723.8 715 56.5
SMO347G0170 Selaginella moellendorffii HOM05D005363 ORTHO05D006607 1.7e-201 707.2 515 66.4
Nitab4.5_0001969g0080 Nicotiana tabacum HOM05D005363 ORTHO05D006607 2.8e-193 679.9 698 59.5
CDE12G0672 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 1.1e-192 677.9 444 74.1
Atru.chr2.2913 Acer truncatum HOM05D005363 ORTHO05D006607 1.0e-179 634.8 374 81.3
CBR_g48040 Chara braunii HOM05D005363 ORTHO05D006607 6.4e-177 625.5 577 54.9
Zm00001eb171920 Zea mays HOM05D005363 ORTHO05D006607 6.6e-174 615.5 511 59.1
Os08g0177600 Oryza sativa ssp. japonica HOM05D005363 ORTHO05D006607 8.9e-171 605.1 505 60.2
Ca_01813_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 2.4e-160 570.5 394 71.1
Nitab4.5_0007366g0050 Nicotiana tabacum HOM05D005363 ORTHO05D006607 5.6e-149 532.7 495 64.8
Eucgr.F01076 Eucalyptus grandis HOM05D005363 ORTHO05D006607 1.5e-146 524.6 540 59.6
Cre12.g556911 Chlamydomonas reinhardtii HOM05D005363 ORTHO05D006607 1.2e-127 461.8 531 46.3
MCO13G379 Micromonas commoda HOM05D005363 ORTHO05D006607 4.0e-123 446.8 559 45.4
unitig_13.g31430 Utricularia gibba HOM05D005363 ORTHO05D006607 3.8e-121 440.3 527 49.9
SEGI_22122 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 2.0e-114 417.9 281 71.5
PRCOL_00003292 Prasinoderma coloniale HOM05D005363 ORTHO05D006607 1.8e-102 378.3 754 35.9
Cfa025591 Carpinus fangiana HOM05D005363 ORTHO05D006607 1.5e-98 365.2 550 37.5
Nitab4.5_0007366g0060 Nicotiana tabacum HOM05D005363 ORTHO05D006607 2.5e-96 357.8 244 72.1
PGSC0003DMG400002669 Solanum tuberosum HOM05D005363 ORTHO05D006607 1.5e-88 332.0 209 76.6
Atru.chr2.2912 Acer truncatum HOM05D005363 ORTHO05D006607 1.4e-83 315.5 378 58.7
CAN.G397.4 Capsicum annuum HOM05D005363 ORTHO05D006607 2.0e-82 311.6 293 58.0
MBI09_g27609_MAGBIO Magnolia biondii HOM05D005363 ORTHO05D006607 4.5e-74 283.9 187 73.3
Eucgr.C01186 Eucalyptus grandis HOM05D005363 ORTHO05D006607 1.8e-67 261.9 327 56.6
CDE12G0057 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 6.4e-52 210.3 202 55.0
SEGI_32923 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 6.4e-44 183.7 100 84.0
CDE12G0487 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 5.6e-40 170.6 302 43.4
Ca_01800_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 2.5e-32 145.2 278 42.8
Ca_30473_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 4.3e-32 144.4 243 45.7
CDE12G0011 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 2.5e-24 118.6 76 77.6
Cc06_g05450 Coffea canephora HOM05D005363 ORTHO05D006607 1.5e-21 109.4 183 49.7
SEGI_35588 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 3.4e-21 108.2 253 40.7
GSVIVG01001519001 Vitis vinifera HOM05D005363 ORTHO05D006607 1.1e-19 103.2 93 58.1
GSVIVG01001488001 Vitis vinifera HOM05D005363 ORTHO05D006607 2.4e-14 85.5 142 44.4
GSVIVG01002726001 Vitis vinifera HOM05D005363 ORTHO05D006607 3.1e-14 85.1 145 44.1
Sopen00g013530 Solanum pennellii HOM05D005363 ORTHO05D006607 9.0e-14 83.6 106 66.0
GSVIVG01004486001 Vitis vinifera HOM05D004774 ORTHO05D005514 6.5e-12 77.4 327 30.6
THA.LOC104811844 Tarenaya hassleriana HOM05D005363 ORTHO05D006607 2.1e-10 72.4 196 47.4
GSVIVG01001483001 Vitis vinifera HOM05D005363 ORTHO05D006607 5.1e-09 67.8 134 40.3
arahy.Tifrunner.gnm1.ann1.Q8WXS4 Arachis hypogaea HOM05D005363 ORTHO05D006607 1.4e-06 59.7 102 42.2


User provided reference genes

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