Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund00732 Selenicereus undatus HOM05D005216 ORTHO05D006453 4.3e-125 451.4 245 100.0
Ah.01g017050 Amaranthus hybridus HOM05D005216 ORTHO05D006453 3.0e-70 269.2 219 72.1
AUR62023880 Chenopodium quinoa HOM05D005216 ORTHO05D006453 6.7e-70 268.1 225 60.9
AUR62022292 Chenopodium quinoa HOM05D005216 ORTHO05D006453 3.3e-69 265.8 225 60.4
GSVIVG01016904001 Vitis vinifera HOM05D005216 ORTHO05D006453 1.6e-66 256.9 155 78.7
Nitab4.5_0009613g0010 Nicotiana tabacum HOM05D005216 ORTHO05D006453 6.5e-65 251.5 216 58.8
Atru.chr1.3605 Acer truncatum HOM05D005216 ORTHO05D006453 8.5e-65 251.1 153 75.2
Nitab4.5_0009106g0020 Nicotiana tabacum HOM05D005216 ORTHO05D006453 7.2e-64 248.1 212 59.4
CsaV3_7G034980 Cucumis sativus L. HOM05D005216 ORTHO05D006453 9.4e-64 247.7 140 80.7
Cc04_g02310 Coffea canephora HOM05D005216 ORTHO05D006453 1.2e-63 247.3 225 56.4
Thhalv10020447m.g Eutrema salsugineum HOM05D005216 ORTHO05D006453 2.1e-63 246.5 221 57.5
Prupe.3G054000 Prunus persica HOM05D005216 ORTHO05D006453 2.7e-63 246.1 215 60.0
ClCG09G000480 Citrullus lanatus HOM05D005216 ORTHO05D006453 3.6e-63 245.7 140 80.0
Potri.001G195300 Populus trichocarpa HOM05D005216 ORTHO05D006453 3.6e-63 245.7 142 78.9
QL05p016421 Quercus lobata HOM05D005216 ORTHO05D006453 4.7e-63 245.4 152 76.3
Cpa.g.sc131.16 Carica papaya HOM05D005216 ORTHO05D006453 6.1e-63 245.0 140 79.3
Hma1.2p1_0388F.1_g142030 Hydrangea macrophylla HOM05D005216 ORTHO05D006453 8.0e-63 244.6 209 63.6
Sed0006988 Sechium edule HOM05D005216 ORTHO05D006453 1.4e-62 243.8 140 80.0
CAN.G1143.37 Capsicum annuum HOM05D005216 ORTHO05D006453 1.8e-62 243.4 210 56.2
Ciclev10025277m.g Citrus clementina HOM05D005216 ORTHO05D006453 1.8e-62 243.4 140 77.9
Cfa003614 Carpinus fangiana HOM05D005216 ORTHO05D006453 2.3e-62 243.0 149 74.5
PGSC0003DMG400002513 Solanum tuberosum HOM05D005216 ORTHO05D006453 2.3e-62 243.0 212 57.5
Sopen03g040070 Solanum pennellii HOM05D005216 ORTHO05D006453 3.0e-62 242.7 210 57.1
BraA05t21622Z Brassica rapa HOM05D005216 ORTHO05D006453 4.0e-62 242.3 234 54.3
Solyc03g121260.3 Solanum lycopersicum HOM05D005216 ORTHO05D006453 4.0e-62 242.3 210 57.1
Hma1.2p1_0388F.1_g142040 Hydrangea macrophylla HOM05D005216 ORTHO05D006453 5.2e-62 241.9 149 76.5
arahy.Tifrunner.gnm1.ann1.CL3NUC Arachis hypogaea HOM05D005216 ORTHO05D006453 6.8e-62 241.5 140 78.6
Lalb_Chr14g0372921 Lupinus albus HOM05D005216 ORTHO05D006453 6.8e-62 241.5 152 73.7
BcaB06g26221 Brassica carinata HOM05D005216 ORTHO05D006453 8.8e-62 241.1 220 55.9
MELO3C024409.2 Cucumis melo HOM05D005216 ORTHO05D006453 8.8e-62 241.1 140 79.3
TAR636G1794 Trochodendron aralioides HOM05D005216 ORTHO05D006453 1.2e-61 240.7 151 75.5
BcaC05g28181 Brassica carinata HOM05D005216 ORTHO05D006453 1.5e-61 240.4 227 54.2
C05p42210 Brassica napus HOM05D005216 ORTHO05D006453 1.5e-61 240.4 227 54.2
BolC5t32949H Brassica oleracea HOM05D005216 ORTHO05D006453 1.5e-61 240.4 227 54.2
COL.COLO4_30571 Corchorus olitorius HOM05D005216 ORTHO05D006453 2.0e-61 240.0 156 71.2
Nn8g38966 Nelumbo nucifera HOM05D005216 ORTHO05D006453 2.6e-61 239.6 146 74.7
Thecc.06G105100 Theobroma cacao HOM05D005216 ORTHO05D006453 2.6e-61 239.6 140 76.4
Aa31LG8G8010 Aethionema arabicum HOM05D005216 ORTHO05D006453 4.4e-61 238.8 149 73.2
Sc15g0000030 Simmondsia chinensis HOM05D005216 ORTHO05D006453 4.4e-61 238.8 140 77.1
AT3G21300 Arabidopsis thaliana HOM05D005216 ORTHO05D006453 7.5e-61 238.0 152 70.4
Eucgr.J02895 Eucalyptus grandis HOM05D005216 ORTHO05D006453 7.5e-61 238.0 146 74.0
FvH4_6g32800 Fragaria vesca HOM05D005216 ORTHO05D006453 7.5e-61 238.0 149 77.2
Oeu052821.2 Olea europaea HOM05D005216 ORTHO05D006453 7.5e-61 238.0 209 57.4
A05p27300 Brassica napus HOM05D005216 ORTHO05D006453 9.8e-61 237.7 224 55.4
Glyma.13G352500 Glycine max HOM05D005216 ORTHO05D006453 9.8e-61 237.7 147 73.5
Lj3g0001017 Lotus japonicus HOM05D005216 ORTHO05D006453 9.8e-61 237.7 140 78.6
MBI01_g16587_MAGBIO Magnolia biondii HOM05D005216 ORTHO05D006453 9.8e-61 237.7 149 71.1
Sp3g19360 Schrenkiella parvula HOM05D005216 ORTHO05D006453 9.8e-61 237.7 150 72.0
Aqoxy7G03942 Aquilegia oxysepala HOM05D005216 ORTHO05D006453 1.7e-60 236.9 140 75.0
arahy.Tifrunner.gnm1.ann1.412K95 Arachis hypogaea HOM05D005216 ORTHO05D006453 1.7e-60 236.9 140 77.1
CANSAT56G3252 Cannabis sativa HOM05D005216 ORTHO05D006453 1.7e-60 236.9 211 59.2
Lj5A50G63 Lonicera japonica HOM05D005216 ORTHO05D006453 1.7e-60 236.9 140 75.7
Dinv37942 Davidia involucrata HOM05D005216 ORTHO05D006453 2.2e-60 236.5 208 65.9
Gohir.D10G065200 Gossypium hirsutum HOM05D005216 ORTHO05D006453 2.8e-60 236.1 140 75.7
Gorai.011G069100 Gossypium raimondii HOM05D005216 ORTHO05D006453 2.8e-60 236.1 140 75.7
RcHm_v2.0_Chr2g0141991 Rosa chinensis HOM05D005216 ORTHO05D006453 2.8e-60 236.1 152 74.3
FAN09G2417 Fragaria x ananassa HOM05D005216 ORTHO05D006453 6.3e-60 235.0 149 76.5
Gohir.A10G063600 Gossypium hirsutum HOM05D005216 ORTHO05D006453 6.3e-60 235.0 140 75.7
Lsat_1_v5_gn_1_36600 Lactuca sativa HOM05D005216 ORTHO05D006453 8.3e-60 234.6 141 73.0
CSS0048704 Camellia sinensis var. sinensis HOM05D005216 ORTHO05D006453 1.1e-59 234.2 221 63.3
Carub.0003s2133 Capsella rubella HOM05D005216 ORTHO05D006453 1.4e-59 233.8 141 74.5
AL3G35360 Arabidopsis lyrata HOM05D005216 ORTHO05D006453 1.8e-59 233.4 141 73.8
HanXRQChr04g0095951 Helianthus annuus HOM05D005216 ORTHO05D006453 1.8e-59 233.4 148 70.9
Duzib192G0447 Durio zibethinus HOM05D005216 ORTHO05D006453 2.4e-59 233.0 152 69.7
PGR102G1400 Punica granatum HOM05D005216 ORTHO05D006453 4.1e-59 232.3 204 56.9
PSO210G6279 Papaver somniferum HOM05D005216 ORTHO05D006453 5.4e-59 231.9 153 70.6
CARHR097230 Cardamine hirsuta HOM05D005216 ORTHO05D006453 7.0e-59 231.5 150 72.0
MD17G1179000 Malus domestica HOM05D005216 ORTHO05D006453 7.0e-59 231.5 156 71.2
PSO210G0066 Papaver somniferum HOM05D005216 ORTHO05D006453 1.6e-58 230.3 153 69.9
vmacro18831 Vaccinium macrocarpon HOM05D005216 ORTHO05D006453 2.0e-58 229.9 211 55.0
Ca_01178_v3 Cicer arietinum L. HOM05D005216 ORTHO05D006453 2.7e-58 229.6 140 72.9
Phvul.005G161800 Phaseolus vulgaris HOM05D005216 ORTHO05D006453 2.7e-58 229.6 151 70.2
SalBow6G0343 Salvia bowleyana HOM05D005216 ORTHO05D006453 3.5e-58 229.2 211 56.4
CiPaw.02G142800 Carya illinoinensis HOM05D005216 ORTHO05D006453 4.5e-58 228.8 211 58.8
Manes.11G029600 Manihot esculenta HOM05D005216 ORTHO05D006453 5.9e-58 228.4 140 75.7
DCAR_031420 Daucus carota HOM05D005216 ORTHO05D006453 7.7e-58 228.0 153 70.6
Migut.I00980 Erythranthe guttata HOM05D005216 ORTHO05D006453 7.7e-58 228.0 208 58.7
Psat5g294680 Pisum sativum HOM05D005216 ORTHO05D006453 2.3e-57 226.5 150 68.7
MSTRG.22612 Avicennia marina HOM05D005216 ORTHO05D006453 3.8e-57 225.7 208 54.3
TPR.G6542 Trifolium pratense HOM05D005216 ORTHO05D006453 6.5e-57 224.9 146 69.9
HPP92_002841 Vanilla planifolia HOM05D005216 ORTHO05D006453 6.5e-57 224.9 150 68.0
ATR0789G110 Amborella trichopoda HOM05D005216 ORTHO05D006453 8.6e-57 224.6 140 72.9
SGA_v2.0_scaffold71G23736 Striga asiatica HOM05D005216 ORTHO05D006453 1.9e-56 223.4 153 68.0
VMungo1080G0616 Vigna mungo HOM05D005216 ORTHO05D006453 1.9e-56 223.4 172 63.4
Medtr2g100500 Medicago truncatula HOM05D005216 ORTHO05D006453 4.2e-56 222.2 140 70.0
Peaxi162Scf00038g01234 Petunia axillaris HOM05D005216 ORTHO05D006453 1.4e-54 217.2 210 54.3
FAN14G3972 Fragaria x ananassa HOM05D005216 ORTHO05D006453 8.8e-54 214.5 142 73.9
unitig_32.g11583 Utricularia gibba HOM05D005216 ORTHO05D006453 2.8e-52 209.5 150 65.3
Haze_15911 Corylus avellana HOM05D005216 ORTHO05D006453 2.4e-51 206.5 211 53.1
SMO118G0221 Selaginella moellendorffii HOM05D005216 ORTHO05D006453 2.4e-51 206.5 152 61.8
Eucgr.J02891 Eucalyptus grandis HOM05D005216 ORTHO05D006453 7.0e-51 204.9 140 69.3
BraA09t38361Z Brassica rapa HOM05D005216 ORTHO05D006453 3.3e-48 196.1 125 71.2
A02p23360 Brassica napus HOM05D005216 ORTHO05D006453 5.6e-48 195.3 125 71.2
BraA03t14429Z Brassica rapa HOM05D005216 ORTHO05D006453 5.6e-48 195.3 125 71.2
BraA07t29116Z Brassica rapa HOM05D005216 ORTHO05D006453 5.6e-48 195.3 125 71.2
Mapoly0054s0113 Marchantia polymorpha HOM05D005216 ORTHO05D006453 1.0e-46 191.0 154 58.4
Pp3c25_5440 Physcomitrium patens HOM05D005216 ORTHO05D006453 4.0e-46 189.1 154 59.1
BcaC05g28683 Brassica carinata HOM05D005216 ORTHO05D006453 3.4e-45 186.0 125 68.8
ECA247G0411 Erigeron canadensis HOM05D005216 ORTHO05D006453 1.6e-42 177.2 107 73.8
Os01g0193600 Oryza sativa ssp. japonica HOM05D005216 ORTHO05D006453 1.7e-41 173.7 144 58.3
HPP92_008116 Vanilla planifolia HOM05D005216 ORTHO05D006453 1.9e-40 170.2 99 76.8
Sabra01G0143000 Salix brachista HOM05D005216 ORTHO05D006453 5.6e-40 168.7 125 64.8
AagrBONN_evm.TU.Sc2ySwM_368.3132 Anthoceros agrestis HOM05D005216 ORTHO05D006453 2.8e-39 166.4 168 50.6
A06p35760 Brassica napus HOM05D005216 ORTHO05D006453 1.1e-38 164.5 101 75.2
BraA06t26500Z Brassica rapa HOM05D005216 ORTHO05D006453 1.1e-38 164.5 101 75.2
BcaC04g19026 Brassica carinata HOM05D005216 ORTHO05D006453 2.9e-36 156.4 125 60.8
EL10Ac9g21148 Beta vulgaris HOM05D005216 ORTHO05D006453 5.4e-35 152.1 210 51.4
Atru.chr11.191 Acer truncatum HOM05D005216 ORTHO05D006453 3.9e-33 146.0 90 73.3
CBR_g9138 Chara braunii HOM05D005216 ORTHO05D006453 6.6e-33 145.2 109 58.7
Atru.chr7.121 Acer truncatum HOM05D005216 ORTHO05D006453 3.6e-31 139.4 81 77.8
PRCOL_00006587 Prasinoderma coloniale HOM05D005216 ORTHO05D006453 1.8e-30 137.1 138 47.1
ECA247G0873 Erigeron canadensis HOM05D005216 ORTHO05D006453 7.1e-27 125.2 84 66.7
Actinidia21734 Actinidia chinensis HOM05D005216 ORTHO05D006453 1.9e-24 117.1 125 55.2
Cre12.g501100 Chlamydomonas reinhardtii HOM05D005216 ORTHO05D006453 5.6e-24 115.5 144 41.7
MCO09G155 Micromonas commoda HOM05D005216 ORTHO05D006453 5.2e-22 109.0 139 43.2
FAN02G2896 Fragaria x ananassa HOM05D005216 ORTHO05D006453 6.8e-22 108.6 65 80.0
BcaC08g47183 Brassica carinata HOM05D005216 ORTHO05D006453 6.4e-20 102.1 65 72.3
MD17G1227200 Malus domestica HOM05D005216 ORTHO05D006453 1.5e-16 90.9 70 58.6
MD10G1214000 Malus domestica HOM05D005216 ORTHO05D006453 2.5e-16 90.1 69 60.9
SEGI_17876 Sequoiadendron giganteum HOM05D005216 ORTHO05D006453 5.2e-14 82.4 46 73.9
HPP92_012307 Vanilla planifolia HOM05D005216 ORTHO05D006453 6.9e-14 82.0 81 50.6
Pp3s32_330 Physcomitrium patens HOM05D005216 ORTHO05D006453 1.7e-12 77.4 153 31.4
FAN05G3586 Fragaria x ananassa HOM05D013336 ORTHO05D015009 3.5e-10 69.7 53 66.0
SalBow6G7091 Salvia bowleyana HOM05D000220 ORTHO05D000141 6.6e-09 65.5 105 41.0
Atru.chr8.582 Acer truncatum HOM05D005216 ORTHO05D006453 1.3e-07 61.2 60 46.7


User provided reference genes

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