Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund00244 Selenicereus undatus HOM05D003708 ORTHO05D004452 0.0e+00 1082.0 538 100.0
Hund06256 Selenicereus undatus HOM05D003708 ORTHO05D004452 1.3e-153 547.4 524 59.4
Ah.01g006350 Amaranthus hybridus HOM05D003708 ORTHO05D004452 2.8e-153 546.2 509 61.3
EL10Ac9g21697 Beta vulgaris HOM05D003708 ORTHO05D004452 5.9e-151 538.5 527 58.6
Sc08g0000610 Simmondsia chinensis HOM05D003708 ORTHO05D004452 1.8e-147 526.9 539 56.8
AUR62016767 Chenopodium quinoa HOM05D003708 ORTHO05D004452 2.3e-147 526.6 526 58.2
Dinv23495 Davidia involucrata HOM05D003708 ORTHO05D004452 3.9e-147 525.8 527 57.3
AUR62011292 Chenopodium quinoa HOM05D003708 ORTHO05D004452 8.8e-147 524.6 526 58.0
vmacro02084 Vaccinium macrocarpon HOM05D003708 ORTHO05D004452 5.7e-146 521.9 541 56.7
Manes.04G073800 Manihot esculenta HOM05D003708 ORTHO05D004452 8.2e-145 518.1 527 57.3
CSS0012852 Camellia sinensis var. sinensis HOM05D003708 ORTHO05D004452 4.1e-144 515.8 526 57.6
Sabra09G0091800 Salix brachista HOM05D003708 ORTHO05D004452 7.0e-144 515.0 532 56.6
AT5G11880 Arabidopsis thaliana HOM05D003708 ORTHO05D004452 3.5e-143 512.7 530 55.1
Ah.01g019180 Amaranthus hybridus HOM05D003708 ORTHO05D004452 5.9e-143 511.9 476 61.1
CANSAT56G1534 Cannabis sativa HOM05D003708 ORTHO05D004452 7.7e-143 511.5 532 56.4
CANSAT56G4510 Cannabis sativa HOM05D003708 ORTHO05D004452 1.0e-142 511.1 532 56.4
MELO3C023315.2 Cucumis melo HOM05D003708 ORTHO05D004452 1.7e-142 510.4 524 56.5
ClCG11G004220 Citrullus lanatus HOM05D003708 ORTHO05D004452 2.9e-142 509.6 524 56.7
CSS0011384 Camellia sinensis var. sinensis HOM05D003708 ORTHO05D004452 6.5e-142 508.4 526 56.8
Thecc.02G081300 Theobroma cacao HOM05D003708 ORTHO05D004452 6.5e-142 508.4 526 56.3
Peaxi162Scf00684g00224 Petunia axillaris HOM05D003708 ORTHO05D004452 1.5e-141 507.3 533 55.0
Carub.0001s3063 Capsella rubella HOM05D003708 ORTHO05D004452 2.5e-141 506.5 531 54.8
CsaV3_2G014950 Cucumis sativus L. HOM05D003708 ORTHO05D004452 3.2e-141 506.1 524 56.1
Atru.chr5.3061 Acer truncatum HOM05D003708 ORTHO05D004452 4.2e-141 505.8 526 56.3
Duzib248G1007 Durio zibethinus HOM05D003708 ORTHO05D004452 4.2e-141 505.8 525 55.8
Gohir.A13G033200 Gossypium hirsutum HOM05D003708 ORTHO05D004452 4.2e-141 505.8 527 56.0
AL6G22640 Arabidopsis lyrata HOM05D003708 ORTHO05D004452 5.5e-141 505.4 531 54.6
Sopen01g052040 Solanum pennellii HOM05D003708 ORTHO05D004452 5.5e-141 505.4 522 55.7
PGSC0003DMG400000737 Solanum tuberosum HOM05D003708 ORTHO05D004452 7.2e-141 505.0 522 55.6
TAR381G0899 Trochodendron aralioides HOM05D003708 ORTHO05D004452 7.2e-141 505.0 527 56.5
Potri.009G119300 Populus trichocarpa HOM05D003708 ORTHO05D004452 9.4e-141 504.6 528 56.1
CSS0004507 Camellia sinensis var. sinensis HOM05D003708 ORTHO05D004452 1.6e-140 503.8 526 56.3
Gohir.D13G031100 Gossypium hirsutum HOM05D003708 ORTHO05D004452 2.1e-140 503.4 527 55.8
Gorai.013G035500 Gossypium raimondii HOM05D003708 ORTHO05D004452 2.1e-140 503.4 527 55.8
Potri.004G157500 Populus trichocarpa HOM05D003708 ORTHO05D004452 2.1e-140 503.4 527 56.2
TWI79G1570 Tripterygium wilfordii HOM05D003708 ORTHO05D004452 2.1e-140 503.4 526 56.7
Aa31LG3G15320 Aethionema arabicum HOM05D003708 ORTHO05D004452 2.7e-140 503.1 536 54.5
CARHR201280 Cardamine hirsuta HOM05D003708 ORTHO05D004452 2.7e-140 503.1 530 54.2
Prupe.8G092300 Prunus persica HOM05D003708 ORTHO05D004452 2.7e-140 503.1 533 55.0
Rhsim01G0265100 Rhododendron simsii HOM05D003708 ORTHO05D004452 2.7e-140 503.1 451 63.2
Sed0019329 Sechium edule HOM05D003708 ORTHO05D004452 2.7e-140 503.1 527 55.6
Migut.N01253 Erythranthe guttata HOM05D003708 ORTHO05D004452 6.1e-140 501.9 518 55.4
Nitab4.5_0002169g0050 Nicotiana tabacum HOM05D003708 ORTHO05D004452 6.1e-140 501.9 507 56.8
Thhalv10013369m.g Eutrema salsugineum HOM05D003708 ORTHO05D004452 8.0e-140 501.5 533 54.4
THA.LOC104799162 Tarenaya hassleriana HOM05D003708 ORTHO05D004452 8.0e-140 501.5 527 54.8
Nn1g04897 Nelumbo nucifera HOM05D003708 ORTHO05D004452 1.4e-139 500.7 551 54.3
Sp6g31720 Schrenkiella parvula HOM05D003708 ORTHO05D004452 1.4e-139 500.7 531 54.8
Solyc01g109850.3 Solanum lycopersicum HOM05D003708 ORTHO05D004452 1.4e-139 500.7 522 55.4
Gohir.D12G029400 Gossypium hirsutum HOM05D003708 ORTHO05D004452 1.8e-139 500.4 530 55.8
Lalb_Chr02g0156131 Lupinus albus HOM05D003708 ORTHO05D004452 1.8e-139 500.4 522 54.4
RcHm_v2.0_Chr6g0265651 Rosa chinensis HOM05D003708 ORTHO05D004452 1.8e-139 500.4 527 55.0
Sed0010943 Sechium edule HOM05D003708 ORTHO05D004452 1.8e-139 500.4 535 55.0
Gorai.008G030100 Gossypium raimondii HOM05D003708 ORTHO05D004452 2.3e-139 500.0 530 55.7
AT3G14390 Arabidopsis thaliana HOM05D003708 ORTHO05D004452 3.0e-139 499.6 531 54.4
Oeu020743.1 Olea europaea HOM05D003708 ORTHO05D004452 3.0e-139 499.6 503 57.3
CAN.G1058.12 Capsicum annuum HOM05D003708 ORTHO05D004452 3.9e-139 499.2 507 56.2
Eucgr.G01640 Eucalyptus grandis HOM05D003708 ORTHO05D004452 3.9e-139 499.2 540 54.4
MD05G1063100 Malus domestica HOM05D003708 ORTHO05D004452 6.7e-139 498.4 527 56.0
AL3G26740 Arabidopsis lyrata HOM05D003708 ORTHO05D004452 8.8e-139 498.0 531 54.2
Carub.0006s1041 Capsella rubella HOM05D003708 ORTHO05D004452 1.1e-138 497.7 530 53.8
COL.COLO4_25976 Corchorus olitorius HOM05D003708 ORTHO05D004452 1.1e-138 497.7 526 55.9
Glyma.19G182000 Glycine max HOM05D003708 ORTHO05D004452 1.1e-138 497.7 527 55.0
CDE05G0123 Ceratophyllum demersum HOM05D003708 ORTHO05D004452 1.5e-138 497.3 553 50.8
Phvul.001G177300 Phaseolus vulgaris HOM05D003708 ORTHO05D004452 1.5e-138 497.3 522 54.6
Lj1g0019257 Lotus japonicus HOM05D003708 ORTHO05D004452 2.0e-138 496.9 533 54.4
Rhsim11G0179400 Rhododendron simsii HOM05D003708 ORTHO05D004452 2.6e-138 496.5 568 52.1
Lalb_Chr20g0112711 Lupinus albus HOM05D003708 ORTHO05D004452 3.3e-138 496.1 537 55.3
MSTRG.5405 Avicennia marina HOM05D003708 ORTHO05D004452 4.4e-138 495.7 513 54.6
Cfa011043 Carpinus fangiana HOM05D003708 ORTHO05D004452 4.4e-138 495.7 526 55.3
arahy.Tifrunner.gnm1.ann1.F2CJ1Q Arachis hypogaea HOM05D003708 ORTHO05D004452 5.7e-138 495.4 512 55.7
A03p05250 Brassica napus HOM05D003708 ORTHO05D004452 5.7e-138 495.4 575 51.5
BolC3t13114H Brassica oleracea HOM05D003708 ORTHO05D004452 5.7e-138 495.4 575 51.5
MD10G1070600 Malus domestica HOM05D003708 ORTHO05D004452 5.7e-138 495.4 526 54.8
C09p64980 Brassica napus HOM05D003708 ORTHO05D004452 9.7e-138 494.6 532 53.8
BolC9t59326H Brassica oleracea HOM05D003708 ORTHO05D004452 9.7e-138 494.6 532 53.8
Lsat_1_v5_gn_7_90480 Lactuca sativa HOM05D003708 ORTHO05D004452 9.7e-138 494.6 528 54.7
arahy.Tifrunner.gnm1.ann1.U6BYIQ Arachis hypogaea HOM05D003708 ORTHO05D004452 1.7e-137 493.8 522 54.2
BraA03t09864Z Brassica rapa HOM05D003708 ORTHO05D004452 1.7e-137 493.8 576 51.6
Haze_02339 Corylus avellana HOM05D003708 ORTHO05D004452 2.2e-137 493.4 526 54.9
Glyma.13G140700 Glycine max HOM05D003708 ORTHO05D004452 2.2e-137 493.4 522 54.4
C03p06040 Brassica napus HOM05D003708 ORTHO05D004452 2.8e-137 493.0 571 52.2
Lj5A195T74 Lonicera japonica HOM05D003708 ORTHO05D004452 2.8e-137 493.0 531 54.6
Nn5g29691 Nelumbo nucifera HOM05D003708 ORTHO05D004452 3.7e-137 492.7 532 53.2
Psat2g152880 Pisum sativum HOM05D003708 ORTHO05D004452 6.3e-137 491.9 522 54.6
TWI31G0810 Tripterygium wilfordii HOM05D003708 ORTHO05D004452 6.3e-137 491.9 525 55.2
BraA10t44652Z Brassica rapa HOM05D003708 ORTHO05D004452 8.2e-137 491.5 532 53.4
FvH4_2g09380 Fragaria vesca HOM05D003708 ORTHO05D004452 1.1e-136 491.1 527 54.6
Glyma.03G181200 Glycine max HOM05D003708 ORTHO05D004452 1.1e-136 491.1 527 54.6
VMungo1383G2129 Vigna mungo HOM05D003708 ORTHO05D004452 1.1e-136 491.1 522 54.2
Medtr5g022700 Medicago truncatula HOM05D003708 ORTHO05D004452 1.4e-136 490.7 527 54.3
QL11p044193 Quercus lobata HOM05D003708 ORTHO05D004452 1.4e-136 490.7 452 61.5
A10p25890 Brassica napus HOM05D003708 ORTHO05D004452 4.1e-136 489.2 532 53.2
FAN15G1456 Fragaria x ananassa HOM05D003708 ORTHO05D004452 4.1e-136 489.2 539 54.0
Ca_24926_v3 Cicer arietinum L. HOM05D003708 ORTHO05D004452 5.3e-136 488.8 527 54.6
PSO339G0466 Papaver somniferum HOM05D003708 ORTHO05D004452 5.3e-136 488.8 546 53.5
FAN20G3010 Fragaria x ananassa HOM05D003708 ORTHO05D004452 7.0e-136 488.4 543 54.0
FAN27G1867 Fragaria x ananassa HOM05D003708 ORTHO05D004452 1.2e-135 487.6 539 54.0
HanXRQChr04g0127831 Helianthus annuus HOM05D003708 ORTHO05D004452 2.0e-135 486.9 538 53.0
MBI16_g07876_MAGBIO Magnolia biondii HOM05D003708 ORTHO05D004452 3.5e-135 486.1 530 53.2
ATR0585G004 Amborella trichopoda HOM05D003708 ORTHO05D004452 4.5e-135 485.7 530 53.2
CiPaw.06G133600 Carya illinoinensis HOM05D003708 ORTHO05D004452 4.5e-135 485.7 526 54.2
FAN24G3295 Fragaria x ananassa HOM05D003708 ORTHO05D004452 5.9e-135 485.3 539 53.6
PSO384G0323 Papaver somniferum HOM05D003708 ORTHO05D004452 5.9e-135 485.3 546 53.3
PGR042G2933 Punica granatum HOM05D003708 ORTHO05D004452 2.2e-134 483.4 500 55.4
QL11p044250 Quercus lobata HOM05D003708 ORTHO05D004452 3.8e-134 482.6 538 52.8
BcaB01g05447 Brassica carinata HOM05D003708 ORTHO05D004452 6.5e-134 481.9 504 55.0
BcaC04g19189 Brassica carinata HOM05D003708 ORTHO05D004452 8.5e-134 481.5 505 55.2
Haze_02345 Corylus avellana HOM05D003708 ORTHO05D004452 1.1e-133 481.1 566 51.2
Haze_24305 Corylus avellana HOM05D003708 ORTHO05D004452 1.5e-133 480.7 571 51.1
unitig_8.g4754 Utricularia gibba HOM05D003708 ORTHO05D004452 2.1e-132 476.9 528 53.6
DCAR_009121 Daucus carota HOM05D003708 ORTHO05D004452 3.6e-132 476.1 513 55.0
Actinidia00541 Actinidia chinensis HOM05D003708 ORTHO05D004452 5.7e-130 468.8 509 55.8
GSVIVG01023813001 Vitis vinifera HOM05D003708 ORTHO05D004452 1.4e-128 464.2 476 57.4
Aqoxy3G00171 Aquilegia oxysepala HOM05D003708 ORTHO05D004452 2.4e-128 463.4 530 51.7
GSVIVG01034280001 Vitis vinifera HOM05D003708 ORTHO05D004452 5.9e-127 458.8 476 56.9
Cc02_g17290 Coffea canephora HOM05D003708 ORTHO05D004452 2.1e-124 450.3 473 55.8
Peaxi162Scf00016g00522 Petunia axillaris HOM05D003708 ORTHO05D004452 1.0e-123 448.0 529 52.0
Os02g0440000 Oryza sativa ssp. japonica HOM05D003708 ORTHO05D004452 3.7e-121 439.5 497 50.1
SGA_v2.0_scaffold5G02835 Striga asiatica HOM05D003708 ORTHO05D004452 6.3e-121 438.7 407 60.4
Zm00001eb406820 Zea mays HOM05D003708 ORTHO05D004452 3.1e-120 436.4 497 49.7
Oeu029157.1 Olea europaea HOM05D003708 ORTHO05D004452 4.1e-120 436.0 533 51.2
Zm00001eb164230 Zea mays HOM05D003708 ORTHO05D004452 4.1e-120 436.0 497 49.5
ECA236G4291 Erigeron canadensis HOM05D003708 ORTHO05D004452 1.6e-119 434.1 473 54.3
ECA246G0885 Erigeron canadensis HOM05D003708 ORTHO05D004452 5.9e-119 432.2 474 54.6
Ciclev10028284m.g Citrus clementina HOM05D003708 ORTHO05D004452 1.4e-115 421.0 531 49.3
SMO301G0021 Selaginella moellendorffii HOM05D003708 ORTHO05D004452 1.0e-110 404.8 521 47.8
TAR628G0623 Trochodendron aralioides HOM05D003708 ORTHO05D004452 1.0e-110 404.8 521 48.9
HPP92_001592 Vanilla planifolia HOM05D003708 ORTHO05D004452 1.7e-110 404.1 428 54.0
BcaB01g05446 Brassica carinata HOM05D003708 ORTHO05D004452 1.1e-109 401.4 424 55.7
Lj9C375G10 Lonicera japonica HOM05D002765 ORTHO05D003083 1.2e-108 397.9 527 48.0
Nitab4.5_0008925g0010 Nicotiana tabacum HOM05D003708 ORTHO05D004452 4.0e-107 392.9 461 51.2
Pp3c24_7340 Physcomitrium patens HOM05D003708 ORTHO05D004452 1.5e-101 374.4 498 45.2
Pp3c24_7341 Physcomitrium patens HOM05D003708 ORTHO05D004452 1.5e-101 374.4 498 45.2
Gohir.A12G043000 Gossypium hirsutum HOM05D003708 ORTHO05D004452 4.3e-101 372.9 408 54.9
Pp3c23_16600 Physcomitrium patens HOM05D003708 ORTHO05D004452 1.2e-100 371.3 502 44.2
AagrBONN_evm.TU.Sc2ySwM_228.2627 Anthoceros agrestis HOM05D003708 ORTHO05D004452 5.2e-99 365.9 511 45.2
Mapoly0005s0182 Marchantia polymorpha HOM05D003708 ORTHO05D004452 1.9e-96 357.5 496 43.3
Dinv42045 Davidia involucrata HOM05D003708 ORTHO05D004452 1.5e-90 337.8 273 65.6
TPR.G10514 Trifolium pratense HOM05D003708 ORTHO05D004452 1.2e-87 328.2 374 52.7
Cre01.g050100 Chlamydomonas reinhardtii HOM05D003708 ORTHO05D004452 3.1e-83 313.5 421 46.3
CDE11G0056 Ceratophyllum demersum HOM05D003708 ORTHO05D004452 6.0e-79 299.3 365 49.9
CSS0015853 Camellia sinensis var. sinensis HOM05D003708 ORTHO05D004452 5.1e-78 296.2 423 47.3
Cpa.g.sc106.13 Carica papaya HOM05D003708 ORTHO05D004452 7.6e-74 282.3 319 53.3
TAR628G0633 Trochodendron aralioides HOM05D003708 ORTHO05D004452 3.3e-69 266.9 389 45.0
CBR_g46280 Chara braunii HOM05D003708 ORTHO05D004452 1.3e-65 255.0 273 50.5
TAR636G0705 Trochodendron aralioides HOM05D003708 ORTHO05D004452 3.2e-64 250.4 287 52.6
TAR381G0003 Trochodendron aralioides HOM05D003708 ORTHO05D004452 7.9e-63 245.7 286 52.4
Lj6C687T4 Lonicera japonica HOM05D003708 ORTHO05D004452 1.2e-55 221.9 228 54.8
Cpa.g.sc106.11 Carica papaya HOM05D003708 ORTHO05D004452 2.1e-55 221.1 170 65.3
SEGI_14006 Sequoiadendron giganteum HOM05D003708 ORTHO05D004452 1.4e-51 208.4 285 44.6
SEGI_13472 Sequoiadendron giganteum HOM05D003708 ORTHO05D004452 8.4e-49 199.1 275 45.5
SEGI_30541 Sequoiadendron giganteum HOM05D003708 ORTHO05D004452 1.8e-46 191.4 275 43.6
TAR383G0428 Trochodendron aralioides HOM05D003708 ORTHO05D004452 5.7e-45 186.4 255 44.3
TPR.G8954 Trifolium pratense HOM05D003708 ORTHO05D004452 9.7e-45 185.7 127 73.2
CSS0044853 Camellia sinensis var. sinensis HOM05D003708 ORTHO05D004452 1.6e-44 184.9 219 49.8
Cc00_g28580 Coffea canephora HOM05D003708 ORTHO05D004452 3.1e-43 180.6 129 68.2
SEGI_18999 Sequoiadendron giganteum HOM05D003708 ORTHO05D004452 4.1e-35 153.7 159 48.4
Lj3C650T5 Lonicera japonica HOM05D003708 ORTHO05D004452 1.2e-34 152.1 201 48.8
CBR_g46282 Chara braunii HOM05D003708 ORTHO05D004452 5.0e-33 146.7 213 41.3
GSVIVG01029866001 Vitis vinifera HOM05D003708 ORTHO05D004452 1.4e-30 138.7 242 41.7
TAR628G0529 Trochodendron aralioides HOM05D003708 ORTHO05D004452 2.8e-28 131.0 203 44.8
TAR628G1665 Trochodendron aralioides HOM05D003708 ORTHO05D004452 1.8e-27 128.3 210 43.3
Lj3C651T3 Lonicera japonica HOM05D003708 ORTHO05D004452 3.1e-27 127.5 165 49.1
vmacro02086 Vaccinium macrocarpon HOM05D001037 ORTHO05D000888 6.5e-25 119.8 372 32.5
Nitab4.5_0000308g0370 Nicotiana tabacum HOM05D003708 ORTHO05D004452 7.2e-24 116.3 163 43.6
vmacro02085 Vaccinium macrocarpon HOM05D001037 ORTHO05D000888 1.2e-23 115.5 231 42.0
Glyma.10G053602 Glycine max HOM05D003708 ORTHO05D004452 3.1e-19 100.9 70 70.0
Duzib268G1397 Durio zibethinus HOM05D003708 ORTHO05D004452 9.1e-19 99.4 102 55.9
arahy.Tifrunner.gnm1.ann1.EPLA3D Arachis hypogaea HOM05D003708 ORTHO05D004452 1.2e-18 99.0 57 77.2
SEGI_39868 Sequoiadendron giganteum HOM05D003708 ORTHO05D004452 2.9e-17 94.4 97 56.7
SEGI_12812 Sequoiadendron giganteum HOM05D003708 ORTHO05D004452 3.8e-17 94.0 93 58.1
BcaC04g19188 Brassica carinata HOM05D003708 ORTHO05D004452 2.1e-15 88.2 96 50.0
arahy.Tifrunner.gnm1.ann1.UUKH7B Arachis hypogaea HOM05D003708 ORTHO05D000639 2.0e-13 81.6 50 72.0
Eucgr.D02438 Eucalyptus grandis HOM05D003708 ORTHO05D004452 1.4e-11 75.5 77 57.1
Peaxi162Scf00286g00237 Petunia axillaris HOM05D003708 ORTHO05D004452 2.4e-11 74.7 75 53.3
VMungo1215G0191 Vigna mungo HOM05D000113 ORTHO05D005275 1.6e-10 72.0 37 91.9
vmacro01715 Vaccinium macrocarpon HOM05D003708 ORTHO05D426473 1.7e-09 68.6 65 56.9
MCO09G633 Micromonas commoda HOM05D003708 ORTHO05D004452 3.2e-08 64.3 404 27.0
MD11G1199400 Malus domestica HOM05D003708 ORTHO05D004452 1.6e-07 62.0 30 86.7
Medtr5g022680 Medicago truncatula HOM05D003708 ORTHO05D004452 8.8e-06 56.2 54 48.1


User provided reference genes

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