Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_2601F.1_g325190 Hydrangea macrophylla HOM05D000104 ORTHO05D032643 5.2e-72 274.2 135 100.0
Hma1.2p1_0512F.1_g169270 Hydrangea macrophylla HOM05D000104 ORTHO05D006071 2.6e-31 139.0 71 95.8
Dinv17300 Davidia involucrata HOM05D000104 ORTHO05D006071 1.5e-26 123.2 71 85.9
Dinv08886 Davidia involucrata HOM05D000104 ORTHO05D006071 4.8e-25 118.2 67 88.1
ECA240G1465 Erigeron canadensis HOM05D000104 ORTHO05D006071 1.8e-24 116.3 71 76.1
Actinidia20024 Actinidia chinensis HOM05D000104 ORTHO05D006071 1.2e-23 113.6 71 78.9
DCAR_020007 Daucus carota HOM05D000104 ORTHO05D006071 3.4e-23 112.1 71 78.9
Manes.13G085000 Manihot esculenta HOM05D000104 ORTHO05D006071 3.4e-23 112.1 71 77.5
Ciclev10000096m.g Citrus clementina HOM05D000104 ORTHO05D006071 9.9e-23 110.5 71 76.1
TAR628G1730 Trochodendron aralioides HOM05D000104 ORTHO05D006071 1.3e-22 110.2 71 77.5
Potri.007G102800 Populus trichocarpa HOM05D000104 ORTHO05D006071 2.2e-22 109.4 71 73.2
Sabra07G0084400 Salix brachista HOM05D000104 ORTHO05D006071 4.9e-22 108.2 71 71.8
Atru.chr4.943 Acer truncatum HOM05D000104 ORTHO05D006071 6.4e-22 107.8 71 74.6
HanXRQChr13g0423701 Helianthus annuus HOM05D000104 ORTHO05D006071 6.4e-22 107.8 71 73.2
Lj2C614G7 Lonicera japonica HOM05D000104 ORTHO05D006071 2.4e-21 105.9 71 77.5
vmacro23048 Vaccinium macrocarpon HOM05D000104 ORTHO05D006071 7.1e-21 104.4 71 73.2
vmacro23146 Vaccinium macrocarpon HOM05D000104 ORTHO05D006071 7.1e-21 104.4 71 73.2
Gohir.D09G003600 Gossypium hirsutum HOM05D000104 ORTHO05D006071 9.3e-21 104.0 71 70.4
Gorai.006G005000 Gossypium raimondii HOM05D000104 ORTHO05D006071 9.3e-21 104.0 71 70.4
Potri.005G066600 Populus trichocarpa HOM05D000104 ORTHO05D006071 9.3e-21 104.0 73 71.2
Sabra05G0054900 Salix brachista HOM05D000104 ORTHO05D006071 9.3e-21 104.0 73 71.2
PGR102G2777 Punica granatum HOM05D000104 ORTHO05D006071 1.2e-20 103.6 71 73.2
Cc02_g29430 Coffea canephora HOM05D000104 ORTHO05D006071 1.6e-20 103.2 71 71.8
Thecc.01G133200 Theobroma cacao HOM05D000104 ORTHO05D006071 1.6e-20 103.2 71 69.0
Rhsim12G0009100 Rhododendron simsii HOM05D005018 ORTHO05D006786 2.7e-20 102.4 71 71.8
EL10Ac4g09611 Beta vulgaris HOM05D000104 ORTHO05D006071 3.5e-20 102.1 71 70.4
Gohir.A09G004100 Gossypium hirsutum HOM05D000104 ORTHO05D006071 3.5e-20 102.1 71 69.0
AUR62000507 Chenopodium quinoa HOM05D000104 ORTHO05D006071 4.6e-20 101.7 71 70.4
AUR62006852 Chenopodium quinoa HOM05D000104 ORTHO05D006071 4.6e-20 101.7 71 70.4
COL.COLO4_35752 Corchorus olitorius HOM05D000104 ORTHO05D006071 4.6e-20 101.7 71 67.6
Eucgr.H05148 Eucalyptus grandis HOM05D000104 ORTHO05D006071 6.0e-20 101.3 71 67.6
Oeu009636.2 Olea europaea HOM05D000104 ORTHO05D006071 7.9e-20 100.9 71 73.2
Lsat_1_v5_gn_3_126201 Lactuca sativa HOM05D000104 ORTHO05D006071 1.0e-19 100.5 71 66.2
Cpa.g.sc1639.3 Carica papaya HOM05D000104 ORTHO05D006071 1.3e-19 100.1 70 70.0
CSS0012619 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D006071 1.8e-19 99.8 71 74.6
CSS0041675 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D006071 1.8e-19 99.8 71 74.6
SGA_v2.0_scaffold212G42200 Striga asiatica HOM05D000104 ORTHO05D006071 2.3e-19 99.4 71 71.8
vmacro08727 Vaccinium macrocarpon HOM05D000104 ORTHO05D032643 2.3e-19 99.4 67 74.6
unitig_26.g9608 Utricularia gibba HOM05D000104 ORTHO05D006071 3.0e-19 99.0 71 67.6
Cfa002182 Carpinus fangiana HOM05D000104 ORTHO05D006071 5.1e-19 98.2 71 69.0
GSVIVG01026450001 Vitis vinifera HOM05D000104 ORTHO05D006071 5.1e-19 98.2 71 70.4
Hund21803 Selenicereus undatus HOM05D000104 ORTHO05D006071 6.7e-19 97.8 71 64.8
Sc09g0002280 Simmondsia chinensis HOM05D000104 ORTHO05D006071 6.7e-19 97.8 106 53.8
THA.LOC104800148 Tarenaya hassleriana HOM05D000104 ORTHO05D006071 6.7e-19 97.8 71 69.0
MSTRG.16996 Avicennia marina HOM05D000104 ORTHO05D006071 1.1e-18 97.1 71 69.0
CiPaw.04G080100 Carya illinoinensis HOM05D000104 ORTHO05D006071 1.1e-18 97.1 71 67.6
ClCG01G015120 Citrullus lanatus HOM05D000104 ORTHO05D006071 1.5e-18 96.7 71 67.6
QL10p041777 Quercus lobata HOM05D000104 ORTHO05D006071 1.5e-18 96.7 71 69.0
QL10p041836 Quercus lobata HOM05D000104 ORTHO05D006071 1.9e-18 96.3 71 70.4
Psat7g045440 Pisum sativum HOM05D000104 ORTHO05D006071 3.3e-18 95.5 71 70.4
Ca_17624_v3 Cicer arietinum L. HOM05D000104 ORTHO05D006071 4.3e-18 95.1 71 70.4
Lj4g0008367 Lotus japonicus HOM05D000104 ORTHO05D006071 4.3e-18 95.1 71 70.4
arahy.Tifrunner.gnm1.ann1.DAD8TC Arachis hypogaea HOM05D000104 ORTHO05D006071 7.4e-18 94.4 72 69.4
arahy.Tifrunner.gnm1.ann1.H21J0D Arachis hypogaea HOM05D000104 ORTHO05D006071 7.4e-18 94.4 72 69.4
MD15G1135700 Malus domestica HOM05D000104 ORTHO05D006071 7.4e-18 94.4 71 66.2
TPR.G37376 Trifolium pratense HOM05D000104 ORTHO05D006071 7.4e-18 94.4 71 69.0
AT5G63950 Arabidopsis thaliana HOM05D000104 ORTHO05D006071 9.6e-18 94.0 71 64.8
CARHR277860 Cardamine hirsuta HOM05D000104 ORTHO05D006071 9.6e-18 94.0 71 64.8
RcHm_v2.0_Chr2g0122191 Rosa chinensis HOM05D000104 ORTHO05D006071 9.6e-18 94.0 71 64.8
SalBow5G2719 Salvia bowleyana HOM05D000104 ORTHO05D006071 9.6e-18 94.0 71 66.2
Migut.B01201 Erythranthe guttata HOM05D000104 ORTHO05D006071 1.3e-17 93.6 71 64.8
AL8G41210 Arabidopsis lyrata HOM05D000104 ORTHO05D006071 1.6e-17 93.2 71 64.8
Sed0020852 Sechium edule HOM05D000104 ORTHO05D006071 1.6e-17 93.2 71 67.6
Carub.0008s2473 Capsella rubella HOM05D000104 ORTHO05D006071 2.8e-17 92.4 71 63.4
Thhalv10003558m.g Eutrema salsugineum HOM05D000104 ORTHO05D006071 2.8e-17 92.4 71 63.4
Sp2g27010 Schrenkiella parvula HOM05D000104 ORTHO05D006071 2.8e-17 92.4 71 63.4
BcaC01g02649 Brassica carinata HOM05D000104 ORTHO05D006071 6.2e-17 91.3 71 62.0
BcaC01g02651 Brassica carinata HOM05D000104 ORTHO05D006071 6.2e-17 91.3 71 62.0
A06p30560 Brassica napus HOM05D000104 ORTHO05D006071 6.2e-17 91.3 71 62.0
C03p62400 Brassica napus HOM05D000104 ORTHO05D006071 6.2e-17 91.3 71 62.0
BolC3t18499H Brassica oleracea HOM05D000104 ORTHO05D006071 6.2e-17 91.3 71 62.0
BraA06t26005Z Brassica rapa HOM05D000104 ORTHO05D006071 6.2e-17 91.3 71 62.0
MELO3C024599.2 Cucumis melo HOM05D000104 ORTHO05D006071 6.2e-17 91.3 72 68.1
Glyma.05G193900 Glycine max HOM05D000104 ORTHO05D006071 6.2e-17 91.3 71 69.0
Prupe.4G275700 Prunus persica HOM05D000104 ORTHO05D006071 6.2e-17 91.3 77 63.6
Medtr8g094070 Medicago truncatula HOM05D000104 ORTHO05D006071 8.1e-17 90.9 71 67.6
BcaB02g09760 Brassica carinata HOM05D000104 ORTHO05D006071 1.4e-16 90.1 71 62.0
CsaV3_6G041230 Cucumis sativus L. HOM05D000104 ORTHO05D006071 1.4e-16 90.1 72 66.7
Glyma.08G001900 Glycine max HOM05D000104 ORTHO05D006071 1.4e-16 90.1 71 69.0
CANSAT01G0184 Cannabis sativa HOM05D000104 ORTHO05D006071 1.8e-16 89.7 71 63.4
Peaxi162Scf00087g00224 Petunia axillaris HOM05D000104 ORTHO05D006071 2.4e-16 89.4 71 64.8
Nn5g28449 Nelumbo nucifera HOM05D000104 ORTHO05D006071 3.1e-16 89.0 71 63.4
Lalb_Chr12g0203051 Lupinus albus HOM05D000104 ORTHO05D006071 5.3e-16 88.2 71 63.4
Aqoxy6G00301 Aquilegia oxysepala HOM05D000104 ORTHO05D006071 6.9e-16 87.8 71 57.7
Lj4g0017230 Lotus japonicus HOM05D000104 ORTHO05D006071 6.9e-16 87.8 71 67.6
Phvul.002G274300 Phaseolus vulgaris HOM05D000104 ORTHO05D006071 9.0e-16 87.4 71 66.2
TWI31G0382 Tripterygium wilfordii HOM05D000104 ORTHO05D006071 1.2e-15 87.0 71 63.4
FvH4_1g24690 Fragaria vesca HOM05D000104 ORTHO05D006071 1.5e-15 86.7 72 62.5
FAN19G1002 Fragaria x ananassa HOM05D000104 ORTHO05D006071 1.5e-15 86.7 72 62.5
Nn1g08948 Nelumbo nucifera HOM05D000104 ORTHO05D006071 1.5e-15 86.7 71 59.2
FAN26G2158 Fragaria x ananassa HOM05D000104 ORTHO05D006071 3.4e-15 85.5 72 61.1
MBI03_g13493_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D006071 4.5e-15 85.1 71 56.3
Medtr8g094100 Medicago truncatula HOM05D000104 ORTHO05D006071 2.2e-14 82.8 71 62.0
Aa31LG1G17950 Aethionema arabicum HOM05D000104 ORTHO05D006071 2.9e-14 82.4 71 57.7
Os04g0692750 Oryza sativa ssp. japonica HOM05D000104 ORTHO05D006071 3.8e-14 82.0 73 57.5
VMungo0251G3768 Vigna mungo HOM05D000104 ORTHO05D006071 4.9e-14 81.6 71 62.0
Zm00001eb076670 Zea mays HOM05D000104 ORTHO05D006071 8.4e-14 80.9 75 54.7
CAN.G410.42 Capsicum annuum HOM05D000104 ORTHO05D006071 1.4e-13 80.1 71 59.2
Nitab4.5_0000316g0170 Nicotiana tabacum HOM05D000104 ORTHO05D006071 4.2e-13 78.6 71 57.7
Nitab4.5_0006307g0040 Nicotiana tabacum HOM05D000104 ORTHO05D006071 4.2e-13 78.6 71 57.7
Solyc01g068280.3 Solanum lycopersicum HOM05D000104 ORTHO05D006071 5.5e-13 78.2 71 56.3
Sopen01g030220 Solanum pennellii HOM05D000104 ORTHO05D006071 5.5e-13 78.2 71 56.3
Lsat_1_v5_gn_3_126241 Lactuca sativa HOM05D000104 ORTHO05D006071 1.6e-12 76.6 73 57.5
Eucgr.C01558 Eucalyptus grandis HOM05D000104 ORTHO05D006071 1.0e-11 73.9 57 66.7
PSO170G5372 Papaver somniferum HOM05D000104 ORTHO05D006071 1.0e-11 73.9 71 50.7
PSO528G0238 Papaver somniferum HOM05D000104 ORTHO05D006071 1.0e-11 73.9 71 50.7
Eucgr.C01537 Eucalyptus grandis HOM05D000104 ORTHO05D006071 2.3e-11 72.8 57 66.7
ATR0188G008 Amborella trichopoda HOM05D000104 ORTHO05D006071 2.1e-09 66.2 71 42.3
Ah.04g157970 Amaranthus hybridus HOM05D000104 ORTHO05D006071 2.8e-09 65.9 47 61.7
CDE04G0721 Ceratophyllum demersum HOM05D000104 ORTHO05D006071 2.4e-08 62.8 72 44.4
Haze_25321 Corylus avellana HOM05D000104 ORTHO05D006071 6.9e-08 61.2 51 60.8
Mapoly0209s0008 Marchantia polymorpha HOM05D000104 ORTHO05D006071 2.0e-07 59.7 72 44.4
AagrBONN_evm.TU.Sc2ySwM_340.353 Anthoceros agrestis HOM05D000104 ORTHO05D006071 4.5e-07 58.5 72 41.7
Pp3c2_11030 Physcomitrium patens HOM05D000104 ORTHO05D006071 1.7e-06 56.6 71 40.8
Pp3c14_20620 Physcomitrium patens HOM05D000104 ORTHO05D006071 2.2e-06 56.2 71 42.3
SEGI_00887 Sequoiadendron giganteum HOM05D000104 ORTHO05D006071 2.2e-06 56.2 81 43.2
SEGI_24909 Sequoiadendron giganteum HOM05D000104 ORTHO05D006071 2.2e-06 56.2 81 43.2
BcaC02g11201 Brassica carinata HOM05D000104 ORTHO05D032643 4.9e-06 55.1 51 51.0


User provided reference genes

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