Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_2499F.1_g323360 Hydrangea macrophylla HOM05D002702 ORTHO05D003416 5.6e-89 330.9 163 100.0
Oeu044210.1 Olea europaea HOM05D002702 ORTHO05D003416 8.2e-56 220.7 165 67.3
GSVIVG01029946001 Vitis vinifera HOM05D002702 ORTHO05D003416 2.6e-54 215.7 164 65.2
Nitab4.5_0000563g0080 Nicotiana tabacum HOM05D002702 ORTHO05D003416 3.5e-54 215.3 165 64.8
Nitab4.5_0002341g0020 Nicotiana tabacum HOM05D002702 ORTHO05D003416 3.5e-54 215.3 165 64.8
Actinidia07964 Actinidia chinensis HOM05D002702 ORTHO05D003416 8.5e-53 210.7 180 59.4
SGA_v2.0_scaffold17G07984 Striga asiatica HOM05D002702 ORTHO05D003416 1.9e-52 209.5 165 62.4
Nitab4.5_0003719g0060 Nicotiana tabacum HOM05D002702 ORTHO05D003416 5.5e-52 208.0 165 63.0
Solyc01g088720.3 Solanum lycopersicum HOM05D002702 ORTHO05D003416 3.9e-50 201.8 165 61.8
Sopen01g035560 Solanum pennellii HOM05D002702 ORTHO05D003416 5.2e-50 201.4 165 61.2
EL10Ac3g05092 Beta vulgaris HOM05D002702 ORTHO05D003416 2.2e-48 196.1 165 60.6
Sc25g0001160 Simmondsia chinensis HOM05D002702 ORTHO05D003416 3.7e-48 195.3 165 59.4
CsaV3_1G039340 Cucumis sativus L. HOM05D002702 ORTHO05D003416 4.8e-48 194.9 162 59.3
Migut.K00214 Erythranthe guttata HOM05D002702 ORTHO05D003416 1.1e-47 193.7 165 58.8
TAR636G0479 Trochodendron aralioides HOM05D002702 ORTHO05D003416 3.1e-47 192.2 161 56.5
Glyma.16G035400 Glycine max HOM05D002702 ORTHO05D003416 9.1e-47 190.7 163 58.3
Glyma.19G117700 Glycine max HOM05D002702 ORTHO05D003416 9.1e-47 190.7 163 58.3
PGR042G0279 Punica granatum HOM05D002702 ORTHO05D003416 1.6e-46 189.9 163 57.1
Dinv25037 Davidia involucrata HOM05D002702 ORTHO05D003416 2.0e-46 189.5 158 60.1
Nn7g37357 Nelumbo nucifera HOM05D002702 ORTHO05D003416 2.0e-46 189.5 160 57.5
Prupe.1G180700 Prunus persica HOM05D002702 ORTHO05D003416 2.9e-45 185.7 160 57.5
Sed0008593 Sechium edule HOM05D002702 ORTHO05D003416 2.9e-45 185.7 162 57.4
Phvul.001G053501 Phaseolus vulgaris HOM05D002702 ORTHO05D003416 3.8e-45 185.3 163 57.1
Phvul.001G106433 Phaseolus vulgaris HOM05D002702 ORTHO05D003416 3.8e-45 185.3 163 57.1
RcHm_v2.0_Chr4g0409121 Rosa chinensis HOM05D002702 ORTHO05D003416 6.5e-45 184.5 161 57.1
Lalb_Chr02g0157411 Lupinus albus HOM05D002702 ORTHO05D003416 1.1e-44 183.7 165 57.0
PSO210G0347 Papaver somniferum HOM05D002702 ORTHO05D003416 1.1e-44 183.7 162 56.2
FvH4_4g11810 Fragaria vesca HOM05D002702 ORTHO05D003416 1.9e-44 183.0 160 56.9
Lj2g0010098 Lotus japonicus HOM05D002702 ORTHO05D003416 2.5e-44 182.6 163 55.2
PSO832G1528 Papaver somniferum HOM05D002702 ORTHO05D003416 1.6e-43 179.9 162 54.9
Eucgr.A02144 Eucalyptus grandis HOM05D002702 ORTHO05D003416 3.6e-43 178.7 160 53.1
Manes.08G152300 Manihot esculenta HOM05D002702 ORTHO05D003416 6.1e-43 177.9 161 52.8
MD04G1033900 Malus domestica HOM05D002702 ORTHO05D003416 1.0e-42 177.2 160 54.4
Rhsim05G0035300 Rhododendron simsii HOM05D002702 ORTHO05D003416 2.3e-42 176.0 162 53.1
Cc02_g13440 Coffea canephora HOM05D002702 ORTHO05D003416 5.2e-42 174.9 163 53.4
Lj4g0005434 Lotus japonicus HOM05D002702 ORTHO05D003416 1.2e-41 173.7 161 51.6
PSO170G0409 Papaver somniferum HOM05D002702 ORTHO05D003416 2.6e-41 172.6 161 54.0
TPR.G9547 Trifolium pratense HOM05D002702 ORTHO05D003416 2.6e-41 172.6 163 52.1
SEGI_15412 Sequoiadendron giganteum HOM05D002702 ORTHO05D000001 5.7e-41 171.4 178 51.7
Hund21093 Selenicereus undatus HOM05D002702 ORTHO05D003416 9.7e-41 170.6 166 54.2
Zm00001eb294470 Zea mays HOM05D002702 ORTHO05D003416 9.7e-41 170.6 161 49.1
Psat3g086240 Pisum sativum HOM05D002702 ORTHO05D003416 4.8e-40 168.3 164 49.4
Psat5g080560 Pisum sativum HOM05D002702 ORTHO05D003416 4.8e-40 168.3 166 55.4
Ciclev10019321m.g Citrus clementina HOM05D002702 ORTHO05D003416 1.1e-39 167.2 165 50.9
Zm00001eb342490 Zea mays HOM05D002702 ORTHO05D003416 4.1e-39 165.2 161 47.8
CiPaw.08G118400 Carya illinoinensis HOM05D002702 ORTHO05D003416 5.3e-39 164.9 164 51.8
CiPaw.15G041500 Carya illinoinensis HOM05D002702 ORTHO05D003416 5.3e-39 164.9 164 51.8
arahy.Tifrunner.gnm1.ann1.LW5WEF Arachis hypogaea HOM05D002702 ORTHO05D003416 7.0e-39 164.5 165 50.9
ATR0697G089 Amborella trichopoda HOM05D002702 ORTHO05D003416 2.7e-38 162.5 161 48.4
Thecc.05G241000 Theobroma cacao HOM05D002702 ORTHO05D003416 5.9e-38 161.4 164 49.4
AagrBONN_evm.TU.Sc2ySwM_228.5644 Anthoceros agrestis HOM05D002702 ORTHO05D003416 7.7e-38 161.0 177 46.9
Sabra16G0149300 Salix brachista HOM05D002702 ORTHO05D003416 7.7e-38 161.0 161 49.1
AUR62028157 Chenopodium quinoa HOM05D002702 ORTHO05D003416 1.7e-37 159.8 165 50.9
Atru.chr2.1532 Acer truncatum HOM05D002702 ORTHO05D003416 2.2e-37 159.5 166 48.2
CANSAT80G1653 Cannabis sativa HOM05D002702 ORTHO05D003416 2.2e-37 159.5 163 50.3
CANSAT80G2236 Cannabis sativa HOM05D002702 ORTHO05D003416 2.2e-37 159.5 163 50.3
Duzib128G1433 Durio zibethinus HOM05D002702 ORTHO05D003416 2.2e-37 159.5 164 50.0
MCO16G125 Micromonas commoda HOM05D002702 ORTHO05D003416 2.2e-37 159.5 163 47.2
Pp3c8_20180 Physcomitrium patens HOM05D002702 ORTHO05D003416 2.2e-37 159.5 177 46.3
Medtr7g086730 Medicago truncatula HOM05D002702 ORTHO05D003416 2.9e-37 159.1 163 46.6
vmacro10812 Vaccinium macrocarpon HOM05D002702 ORTHO05D003416 6.5e-37 157.9 176 48.3
MBI17_g29780_MAGBIO Magnolia biondii HOM05D002702 ORTHO05D003416 8.5e-37 157.5 161 49.7
Thhalv10020503m.g Eutrema salsugineum HOM05D002702 ORTHO05D003416 1.5e-36 156.8 163 49.1
PGR031G3358 Punica granatum HOM05D002702 ORTHO05D003416 1.5e-36 156.8 181 47.5
Aa31LG3G1860 Aethionema arabicum HOM05D002702 ORTHO05D003416 3.2e-36 155.6 164 49.4
Cpa.g.c27574 Carica papaya HOM05D002702 ORTHO05D003416 3.2e-36 155.6 164 50.6
SMO196G0286 Selaginella moellendorffii HOM05D002702 ORTHO05D003416 3.2e-36 155.6 181 45.3
Gohir.D13G166200 Gossypium hirsutum HOM05D002702 ORTHO05D003416 4.2e-36 155.2 165 49.1
Gorai.013G196300 Gossypium raimondii HOM05D002702 ORTHO05D003416 4.2e-36 155.2 165 49.1
Mapoly0001s0017 Marchantia polymorpha HOM05D002702 ORTHO05D003416 4.2e-36 155.2 180 46.1
A03p35990 Brassica napus HOM05D002702 ORTHO05D003416 7.2e-36 154.5 164 51.2
C03p43620 Brassica napus HOM05D002702 ORTHO05D003416 7.2e-36 154.5 164 50.6
BraA03t12771Z Brassica rapa HOM05D002702 ORTHO05D003416 7.2e-36 154.5 164 50.6
Aqoxy4G00023 Aquilegia oxysepala HOM05D002702 ORTHO05D003416 9.4e-36 154.1 165 47.9
Aqoxy5G01199 Aquilegia oxysepala HOM05D002702 ORTHO05D003416 9.4e-36 154.1 165 47.9
TWI60G0137 Tripterygium wilfordii HOM05D002702 ORTHO05D003416 1.2e-35 153.7 163 49.1
Medtr6g027510 Medicago truncatula HOM05D002702 ORTHO05D003416 1.6e-35 153.3 168 50.0
Sp3g07740 Schrenkiella parvula HOM05D002702 ORTHO05D003416 1.6e-35 153.3 164 50.0
BolC3t16631H Brassica oleracea HOM05D002702 ORTHO05D003416 2.1e-35 152.9 165 49.7
HanXRQChr04g0118861 Helianthus annuus HOM05D002702 ORTHO05D003416 2.1e-35 152.9 163 48.5
Os05g0305100 Oryza sativa ssp. japonica HOM05D002702 ORTHO05D003416 2.1e-35 152.9 161 45.3
Gohir.A13G160900 Gossypium hirsutum HOM05D002702 ORTHO05D003416 2.7e-35 152.5 163 49.1
Lsat_1_v5_gn_1_126300 Lactuca sativa HOM05D002702 ORTHO05D003416 2.7e-35 152.5 166 47.6
BcaC01g04231 Brassica carinata HOM05D002702 ORTHO05D003416 3.6e-35 152.1 164 50.6
THA.LOC104816256 Tarenaya hassleriana HOM05D002702 ORTHO05D003416 3.6e-35 152.1 163 47.2
ECA233G5306 Erigeron canadensis HOM05D002702 ORTHO05D003416 4.7e-35 151.8 166 48.2
BcaB03g11605 Brassica carinata HOM05D002702 ORTHO05D003416 6.1e-35 151.4 164 49.4
Potri.001G246100 Populus trichocarpa HOM05D002702 ORTHO05D003416 6.1e-35 151.4 161 48.4
AL3G20510 Arabidopsis lyrata HOM05D002702 ORTHO05D003416 8.0e-35 151.0 164 49.4
Ah.04g159560 Amaranthus hybridus HOM05D002702 ORTHO05D003416 1.0e-34 150.6 170 50.0
Carub.0003s0847 Capsella rubella HOM05D002702 ORTHO05D003416 1.0e-34 150.6 164 49.4
DCAR_031564 Daucus carota HOM05D002702 ORTHO05D003416 1.0e-34 150.6 169 49.7
Potri.009G039100 Populus trichocarpa HOM05D002702 ORTHO05D003416 1.0e-34 150.6 161 48.4
FAN08G0285 Fragaria x ananassa HOM05D002702 ORTHO05D003416 1.8e-34 149.8 162 46.9
PRCOL_00005646 Prasinoderma coloniale HOM05D002702 ORTHO05D003416 1.8e-34 149.8 180 43.9
TPR.G34790 Trifolium pratense HOM05D002702 ORTHO05D003416 1.8e-34 149.8 164 45.1
SalBow2G1241 Salvia bowleyana HOM05D002702 ORTHO05D003416 2.3e-34 149.4 214 41.1
CBR_g30840 Chara braunii HOM05D002702 ORTHO05D003416 4.0e-34 148.7 179 45.8
CBR_g31712 Chara braunii HOM05D002702 ORTHO05D003416 6.8e-34 147.9 180 45.6
Sp1g06510 Schrenkiella parvula HOM05D002702 ORTHO05D003416 6.8e-34 147.9 163 45.4
CARHR083720 Cardamine hirsuta HOM05D002702 ORTHO05D003416 8.8e-34 147.5 164 48.8
ClCG03G016660 Citrullus lanatus HOM05D002702 ORTHO05D003416 1.2e-33 147.1 162 49.4
FvH4_5g32090 Fragaria vesca HOM05D002702 ORTHO05D003416 1.2e-33 147.1 161 46.6
FAN18G3773 Fragaria x ananassa HOM05D002702 ORTHO05D003416 1.2e-33 147.1 161 46.6
RcHm_v2.0_Chr7g0228131 Rosa chinensis HOM05D002702 ORTHO05D003416 1.2e-33 147.1 161 45.3
arahy.Tifrunner.gnm1.ann1.9I2R1K Arachis hypogaea HOM05D002702 ORTHO05D003416 1.5e-33 146.7 165 47.9
AT3G09360 Arabidopsis thaliana HOM05D002702 ORTHO05D003416 2.6e-33 146.0 164 49.4
Carub.0002s1026 Capsella rubella HOM05D002702 ORTHO05D003416 3.4e-33 145.6 163 45.4
AUR62005908 Chenopodium quinoa HOM05D002702 ORTHO05D003416 4.4e-33 145.2 158 49.4
Atru.chr2.91 Acer truncatum HOM05D002702 ORTHO05D003416 5.7e-33 144.8 165 46.7
FAN12G2138 Fragaria x ananassa HOM05D002702 ORTHO05D003416 4.8e-32 141.7 160 48.8
FAN17G2691 Fragaria x ananassa HOM05D002702 ORTHO05D003416 4.8e-32 141.7 160 48.8
Gohir.D11G170800 Gossypium hirsutum HOM05D002702 ORTHO05D003416 6.3e-32 141.4 166 45.2
Gorai.007G182800 Gossypium raimondii HOM05D002702 ORTHO05D003416 6.3e-32 141.4 166 45.2
AL2G39140 Arabidopsis lyrata HOM05D002702 ORTHO05D003416 1.8e-31 139.8 163 43.6
BcaC02g11927 Brassica carinata HOM05D002702 ORTHO05D003416 1.8e-31 139.8 161 44.7
AL5G10240 Arabidopsis lyrata HOM05D002702 ORTHO05D003416 2.4e-31 139.4 164 45.7
Nitab4.5_0000175g0200 Nicotiana tabacum HOM05D002702 ORTHO05D003416 2.4e-31 139.4 85 72.9
CDE10G0041 Ceratophyllum demersum HOM05D002702 ORTHO05D003416 3.1e-31 139.0 164 48.8
Nitab4.5_0004196g0010 Nicotiana tabacum HOM05D002702 ORTHO05D003416 3.1e-31 139.0 85 72.9
QL05p040855 Quercus lobata HOM05D002702 ORTHO05D003416 3.1e-31 139.0 137 53.3
HPP92_004334 Vanilla planifolia HOM05D002702 ORTHO05D003416 4.1e-31 138.7 133 48.1
Thhalv10011362m.g Eutrema salsugineum HOM05D002702 ORTHO05D003416 7.0e-31 137.9 164 46.3
AT2G45100 Arabidopsis thaliana HOM05D002702 ORTHO05D003416 1.6e-30 136.7 164 46.3
QL05p014746 Quercus lobata HOM05D002702 ORTHO05D003416 1.6e-30 136.7 136 52.9
Gohir.A11G164500 Gossypium hirsutum HOM05D002702 ORTHO05D003416 2.0e-30 136.3 166 44.0
FAN07G2025 Fragaria x ananassa HOM05D002702 ORTHO05D003416 2.7e-30 136.0 160 49.4
C04p09810 Brassica napus HOM05D002702 ORTHO05D003416 4.5e-30 135.2 164 43.9
BolC4t22589H Brassica oleracea HOM05D002702 ORTHO05D003416 4.5e-30 135.2 164 43.9
SMO117G0141 Selaginella moellendorffii HOM05D002702 ORTHO05D003416 5.9e-30 134.8 176 42.0
C04p00530 Brassica napus HOM05D002702 ORTHO05D003416 1.0e-29 134.0 164 43.3
FAN12G2960 Fragaria x ananassa HOM05D002702 ORTHO05D003416 1.3e-29 133.7 156 48.1
CSS0039994 Camellia sinensis var. sinensis HOM05D002702 ORTHO05D003416 2.3e-29 132.9 84 72.6
DCAR_013573 Daucus carota HOM05D002702 ORTHO05D003416 3.8e-29 132.1 209 40.2
BcaC02g12571 Brassica carinata HOM05D002702 ORTHO05D003416 5.0e-29 131.7 164 42.7
BolC4t21688H Brassica oleracea HOM05D002702 ORTHO05D003416 5.0e-29 131.7 164 42.7
AL357U10010 Arabidopsis lyrata HOM05D002702 ORTHO05D003416 1.5e-28 130.2 164 44.5
Cre06.g256420 Chlamydomonas reinhardtii HOM05D002702 ORTHO05D003416 1.5e-28 130.2 177 39.5
CARHR248300 Cardamine hirsuta HOM05D002702 ORTHO05D003416 1.9e-28 129.8 166 44.0
COL.COLO4_20084 Corchorus olitorius HOM05D002702 ORTHO05D003416 1.9e-28 129.8 135 51.1
BcaB02g08778 Brassica carinata HOM05D002702 ORTHO05D003416 1.6e-27 126.7 191 39.8
Aqoxy4G00362 Aquilegia oxysepala HOM05D002702 ORTHO05D003416 7.5e-25 117.9 162 41.4
unitig_748.g8246 Utricularia gibba HOM05D002702 ORTHO05D003416 4.9e-24 115.2 137 48.9
SHI21356 Sapria himalayana HOM05D002702 ORTHO05D000023 1.4e-23 113.6 126 46.8
FAN13G2753 Fragaria x ananassa HOM05D002702 ORTHO05D003416 1.6e-22 110.2 161 39.1
Haze_06436 Corylus avellana HOM05D002702 ORTHO05D003416 8.6e-21 104.4 122 46.7
Thhalv10027195m.g Eutrema salsugineum HOM05D002702 ORTHO05D003416 4.3e-20 102.1 84 54.8
AT2G01280 Arabidopsis thaliana HOM05D002702 ORTHO05D003416 5.6e-20 101.7 162 37.0
MELO3C015360.2 Cucumis melo HOM05D002702 ORTHO05D003416 9.5e-20 100.9 108 48.1
Peaxi162Scf00793g00338 Petunia axillaris HOM05D002702 ORTHO05D003416 6.1e-19 98.2 81 58.0
Ca_04466_v3 Cicer arietinum L. HOM05D002702 ORTHO05D003416 8.9e-18 94.4 109 44.0
Ca_08321_v3 Cicer arietinum L. HOM05D002702 ORTHO05D003416 3.4e-17 92.4 109 46.8
VMungo1383G1676 Vigna mungo HOM05D002702 ORTHO05D003416 9.8e-17 90.9 108 47.2
vmacro18115 Vaccinium macrocarpon HOM05D002702 ORTHO05D003416 2.9e-16 89.4 125 41.6
Zm00001eb210070 Zea mays HOM05D002702 ORTHO05D003416 4.9e-16 88.6 55 72.7
FAN01G1797 Fragaria x ananassa HOM05D002702 ORTHO05D003416 8.3e-16 87.8 57 66.7
Zm00001eb190030 Zea mays HOM05D002702 ORTHO05D003416 1.9e-15 86.7 55 70.9
CAN.G388.55 Capsicum annuum HOM05D002702 ORTHO05D003416 7.0e-15 84.7 109 44.0
Carub.0002s0029 Capsella rubella HOM05D002702 ORTHO05D003416 4.6e-14 82.0 79 48.1
BcaB02g08781 Brassica carinata HOM05D002702 ORTHO05D003416 3.0e-13 79.3 169 36.1
Cfa006401 Carpinus fangiana HOM05D002702 ORTHO05D003416 1.9e-12 76.6 87 50.6
Lalb_Chr14g0370781 Lupinus albus HOM05D002702 ORTHO05D003416 2.5e-12 76.3 50 72.0
FAN03G1493 Fragaria x ananassa HOM05D002702 ORTHO05D003416 4.3e-12 75.5 160 33.8
BcaB03g11606 Brassica carinata HOM05D002702 ORTHO05D003416 2.1e-11 73.2 142 33.8
ECA233G5179 Erigeron canadensis HOM05D002702 ORTHO05D003416 2.8e-11 72.8 107 39.3
DCAR_015631 Daucus carota HOM05D002702 ORTHO05D003416 3.6e-11 72.4 65 53.8
BraA05t19037Z Brassica rapa HOM05D002702 ORTHO05D003416 1.8e-10 70.1 85 45.9
A05p00390 Brassica napus HOM05D002702 ORTHO05D003416 3.1e-10 69.3 79 46.8
Glyma.01G125500 Glycine max HOM05D002702 ORTHO05D003416 1.5e-09 67.0 62 53.2
FAN06G3121 Fragaria x ananassa HOM05D002702 ORTHO05D003416 2.6e-09 66.2 47 61.7
Zm00001eb170840 Zea mays HOM05D009386 ORTHO05D011419 2.2e-08 63.2 38 73.7
DCAR_026750 Daucus carota HOM05D002702 ORTHO05D003416 1.9e-07 60.1 77 39.0
Nitab4.5_0000322g0190 Nicotiana tabacum HOM05D002702 ORTHO05D003416 1.2e-06 57.4 85 40.0
DCAR_026751 Daucus carota HOM05D002702 ORTHO05D003416 3.5e-06 55.8 60 43.3


User provided reference genes

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