Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0042F.1_g025460 Hydrangea macrophylla HOM05D000936 ORTHO05D005107 1.1e-30 136.0 68 100.0
Hma1.2p1_0405F.1_g145565 Hydrangea macrophylla HOM05D000936 ORTHO05D005107 1.1e-30 136.0 68 100.0
Hma1.2p1_0451F.1_g155765 Hydrangea macrophylla HOM05D000936 ORTHO05D005107 1.1e-30 136.0 68 100.0
Hma1.2p1_2406F.1_g321475 Hydrangea macrophylla HOM05D000936 ORTHO05D005107 1.1e-30 136.0 68 100.0
Manes.03G076150 Manihot esculenta HOM05D000936 ORTHO05D005107 1.4e-20 102.4 67 79.1
Manes.03G076300 Manihot esculenta HOM05D000936 ORTHO05D005107 1.4e-20 102.4 67 79.1
ClCG02G018890 Citrullus lanatus HOM05D000936 ORTHO05D005107 2.3e-20 101.7 67 79.1
MELO3C019602.2 Cucumis melo HOM05D000936 ORTHO05D005107 4.0e-20 100.9 67 77.6
CsaV3_6G013300 Cucumis sativus L. HOM05D000936 ORTHO05D005107 4.0e-20 100.9 67 77.6
QL04p096609 Quercus lobata HOM05D000936 ORTHO05D005107 4.0e-20 100.9 67 77.6
Atru.chr1.4 Acer truncatum HOM05D000936 ORTHO05D005107 5.2e-20 100.5 56 89.3
Aqoxy1G01341 Aquilegia oxysepala HOM05D000936 ORTHO05D005107 5.2e-20 100.5 56 89.3
CSS0044630 Camellia sinensis var. sinensis HOM05D000936 ORTHO05D005107 5.2e-20 100.5 56 89.3
COL.COLO4_32277 Corchorus olitorius HOM05D000936 ORTHO05D005107 5.2e-20 100.5 56 89.3
HanXRQChr11g0335891 Helianthus annuus HOM05D000936 ORTHO05D005107 5.2e-20 100.5 56 89.3
Nn7g38429 Nelumbo nucifera HOM05D000936 ORTHO05D005107 5.2e-20 100.5 56 89.3
PSO541G4061 Papaver somniferum HOM05D000936 ORTHO05D005107 5.2e-20 100.5 56 89.3
PGR042G2500 Punica granatum HOM05D000936 ORTHO05D005107 5.2e-20 100.5 56 89.3
Rhsim04G0003900 Rhododendron simsii HOM05D000936 ORTHO05D005107 5.2e-20 100.5 56 89.3
Thecc.07G192500 Theobroma cacao HOM05D000936 ORTHO05D005107 5.2e-20 100.5 56 89.3
vmacro09758 Vaccinium macrocarpon HOM05D000936 ORTHO05D005107 5.2e-20 100.5 56 89.3
CAN.G67.4 Capsicum annuum HOM05D000936 ORTHO05D005107 6.8e-20 100.1 56 87.5
RcHm_v2.0_Chr5g0022531 Rosa chinensis HOM05D000936 ORTHO05D005107 6.8e-20 100.1 67 77.6
TWI59G0187 Tripterygium wilfordii HOM05D000936 ORTHO05D005107 6.8e-20 100.1 56 87.5
Duzib251G0327 Durio zibethinus HOM05D000936 ORTHO05D005107 8.8e-20 99.8 65 76.9
Medtr2g062790 Medicago truncatula HOM05D000936 ORTHO05D005107 1.2e-19 99.4 56 87.5
Phvul.005G044400 Phaseolus vulgaris HOM05D000936 ORTHO05D005107 1.2e-19 99.4 56 87.5
Sed0019803 Sechium edule HOM05D000936 ORTHO05D005107 1.2e-19 99.4 67 76.1
TAR624G0750 Trochodendron aralioides HOM05D000936 ORTHO05D005107 1.2e-19 99.4 56 87.5
unitig_32.g11069 Utricularia gibba HOM05D000936 ORTHO05D005107 1.2e-19 99.4 56 87.5
ATR1136G108 Amborella trichopoda HOM05D000936 ORTHO05D005107 1.5e-19 99.0 56 85.7
FvH4_3g13561 Fragaria vesca HOM05D000936 ORTHO05D005107 1.5e-19 99.0 67 76.1
FAN21G1952 Fragaria x ananassa HOM05D000936 ORTHO05D005107 1.5e-19 99.0 67 76.1
Lj8A190G37 Lonicera japonica HOM05D000936 ORTHO05D005107 1.5e-19 99.0 56 87.5
Actinidia03634 Actinidia chinensis HOM05D000936 ORTHO05D005107 2.0e-19 98.6 56 87.5
Aa31sc115G70 Aethionema arabicum HOM05D000936 ORTHO05D005107 2.0e-19 98.6 67 74.6
Cfa017781 Carpinus fangiana HOM05D000936 ORTHO05D005107 2.0e-19 98.6 56 87.5
Ciclev10004357m.g Citrus clementina HOM05D000936 ORTHO05D005107 2.0e-19 98.6 56 87.5
Haze_18446 Corylus avellana HOM05D000936 ORTHO05D005107 2.0e-19 98.6 56 87.5
Eucgr.F04488 Eucalyptus grandis HOM05D000936 ORTHO05D005107 2.0e-19 98.6 56 87.5
Lsat_1_v5_gn_7_111041 Lactuca sativa HOM05D000936 ORTHO05D005107 2.0e-19 98.6 67 76.1
Nitab4.5_0001995g0030 Nicotiana tabacum HOM05D000936 ORTHO05D005107 2.0e-19 98.6 56 85.7
Oeu017915.1 Olea europaea HOM05D000936 ORTHO05D005107 2.0e-19 98.6 56 87.5
Peaxi162Scf00006g02411 Petunia axillaris HOM05D000936 ORTHO05D005107 2.0e-19 98.6 56 87.5
Potri.010G176400 Populus trichocarpa HOM05D000936 ORTHO05D005107 2.0e-19 98.6 56 87.5
GSVIVG01036685001 Vitis vinifera HOM05D000936 ORTHO05D005107 2.0e-19 98.6 56 87.5
Cpa.g.sc118.20 Carica papaya HOM05D000936 ORTHO05D005107 2.6e-19 98.2 56 87.5
Os01g0218700 Oryza sativa ssp. japonica HOM05D000936 ORTHO05D005107 2.6e-19 98.2 67 76.1
PSO675G2338 Papaver somniferum HOM05D000936 ORTHO05D005107 2.6e-19 98.2 56 87.5
THA.LOC104815715 Tarenaya hassleriana HOM05D000936 ORTHO05D005107 2.6e-19 98.2 56 85.7
Zm00001eb338660 Zea mays HOM05D000936 ORTHO05D005107 2.6e-19 98.2 67 76.1
arahy.Tifrunner.gnm1.ann1.LF646F Arachis hypogaea HOM05D000936 ORTHO05D005107 4.4e-19 97.4 56 85.7
CiPaw.16G078800 Carya illinoinensis HOM05D000936 ORTHO05D005107 4.4e-19 97.4 56 85.7
Dinv42447 Davidia involucrata HOM05D000936 ORTHO05D005107 4.4e-19 97.4 56 85.7
Psat1g131040 Pisum sativum HOM05D000936 ORTHO05D005107 4.4e-19 97.4 56 85.7
Prupe.4G123900 Prunus persica HOM05D000936 ORTHO05D005107 4.4e-19 97.4 56 85.7
Sabra10G0135700 Salix brachista HOM05D000936 ORTHO05D001411 4.4e-19 97.4 56 85.7
Solyc12g017420.2 Solanum lycopersicum HOM05D000936 ORTHO05D005107 4.4e-19 97.4 56 85.7
Sopen12g008200 Solanum pennellii HOM05D000936 ORTHO05D005107 4.4e-19 97.4 56 85.7
TPR.G3637 Trifolium pratense HOM05D000936 ORTHO05D005107 4.4e-19 97.4 56 87.5
Cc00_g09060 Coffea canephora HOM05D000936 ORTHO05D005107 5.7e-19 97.1 67 76.1
DCAR_016855 Daucus carota HOM05D000936 ORTHO05D005107 5.7e-19 97.1 67 73.1
ECA232G0034 Erigeron canadensis HOM05D000936 ORTHO05D005107 5.7e-19 97.1 56 85.7
ECA236G1665 Erigeron canadensis HOM05D000936 ORTHO05D005107 5.7e-19 97.1 56 85.7
AL1G64570 Arabidopsis lyrata HOM05D000936 ORTHO05D005107 7.5e-19 96.7 56 83.9
AT1G54350 Arabidopsis thaliana HOM05D000936 ORTHO05D005107 7.5e-19 96.7 56 83.9
BcaB07g33040 Brassica carinata HOM05D000936 ORTHO05D005107 7.5e-19 96.7 56 83.9
Carub.0001s4482 Capsella rubella HOM05D000936 ORTHO05D005107 7.5e-19 96.7 56 83.9
CARHR046020 Cardamine hirsuta HOM05D000936 ORTHO05D005107 7.5e-19 96.7 56 83.9
Thhalv10011270m.g Eutrema salsugineum HOM05D000936 ORTHO05D005107 7.5e-19 96.7 56 83.9
Nitab4.5_0000388g0010 Nicotiana tabacum HOM05D000936 ORTHO05D005107 7.5e-19 96.7 56 83.9
Sp1g41890 Schrenkiella parvula HOM05D000936 ORTHO05D005107 7.5e-19 96.7 56 83.9
Sc02g0002940 Simmondsia chinensis HOM05D000936 ORTHO05D005107 9.7e-19 96.3 56 85.7
SGA_v2.0_scaffold239G43992 Striga asiatica HOM05D000936 ORTHO05D005107 9.7e-19 96.3 56 83.9
HPP92_026769 Vanilla planifolia HOM05D000936 ORTHO05D005107 9.7e-19 96.3 67 74.6
Migut.H01645 Erythranthe guttata HOM05D000936 ORTHO05D005107 1.3e-18 95.9 56 83.9
Hund03214 Selenicereus undatus HOM05D000936 ORTHO05D005107 1.3e-18 95.9 56 85.7
BcaC09g50320 Brassica carinata HOM05D000936 ORTHO05D005107 1.7e-18 95.5 56 82.1
A01p21320 Brassica napus HOM05D000936 ORTHO05D005107 1.7e-18 95.5 56 82.1
C01p26670 Brassica napus HOM05D000936 ORTHO05D005107 1.7e-18 95.5 56 82.1
BolC1t02608H Brassica oleracea HOM05D000936 ORTHO05D005107 1.7e-18 95.5 56 82.1
BraA01t02039Z Brassica rapa HOM05D000936 ORTHO05D005107 1.7e-18 95.5 56 82.1
Ca_03315_v3 Cicer arietinum L. HOM05D000936 ORTHO05D005107 1.7e-18 95.5 56 83.9
Gohir.A01G023000 Gossypium hirsutum HOM05D000936 ORTHO05D005107 1.7e-18 95.5 67 73.1
Lalb_Chr25g0284041 Lupinus albus HOM05D000936 ORTHO05D005107 1.7e-18 95.5 56 83.9
CDE04G1459 Ceratophyllum demersum HOM05D000936 ORTHO05D005107 2.2e-18 95.1 67 74.6
Glyma.08G160900 Glycine max HOM05D000936 ORTHO05D005107 2.2e-18 95.1 56 82.1
SEGI_28941 Sequoiadendron giganteum HOM05D000936 ORTHO05D005107 2.2e-18 95.1 56 82.1
Gohir.D01G021000 Gossypium hirsutum HOM05D000936 ORTHO05D005107 3.7e-18 94.4 56 82.1
Gorai.002G023500 Gossypium raimondii HOM05D000936 ORTHO05D005107 3.7e-18 94.4 56 82.1
SalBow8G2375 Salvia bowleyana HOM05D000936 ORTHO05D005107 3.7e-18 94.4 56 82.1
EL10Ac2g03607 Beta vulgaris HOM05D000936 ORTHO05D005107 4.8e-18 94.0 56 82.1
Lalb_Chr01g0015671 Lupinus albus HOM05D000936 ORTHO05D005107 6.3e-18 93.6 65 72.3
AagrBONN_evm.TU.Sc2ySwM_344.1171 Anthoceros agrestis HOM05D000936 ORTHO05D005107 1.1e-17 92.8 56 78.6
Psat3g193720 Pisum sativum HOM05D000936 ORTHO05D005107 1.1e-17 92.8 56 82.1
CANSAT56G3090 Cannabis sativa HOM05D000936 ORTHO05D005107 1.8e-17 92.0 67 70.1
AUR62020749 Chenopodium quinoa HOM05D000936 ORTHO05D005107 1.8e-17 92.0 56 80.4
AUR62027964 Chenopodium quinoa HOM05D000936 ORTHO05D005107 1.8e-17 92.0 56 80.4
Lj3g0022291 Lotus japonicus HOM05D000936 ORTHO05D005107 1.8e-17 92.0 56 82.1
HanXRQChr07g0190671 Helianthus annuus HOM05D000936 ORTHO05D005107 9.1e-17 89.7 56 78.6
Phvul.005G044300 Phaseolus vulgaris HOM05D000936 ORTHO05D005107 9.1e-17 89.7 56 78.6
MBI18_g39257_MAGBIO Magnolia biondii HOM05D000936 ORTHO05D005107 1.6e-16 89.0 56 82.1
MD10G1220300 Malus domestica HOM05D000936 ORTHO05D005107 1.6e-16 89.0 56 78.6
Mapoly0094s0070 Marchantia polymorpha HOM05D000936 ORTHO05D005107 2.7e-16 88.2 56 75.0
RcHm_v2.0_Chr1g0347801 Rosa chinensis HOM05D000936 ORTHO05D005107 2.7e-16 88.2 67 70.1
SMO117G0099 Selaginella moellendorffii HOM05D000936 ORTHO05D005107 2.7e-16 88.2 56 73.2
CBR_g26492 Chara braunii HOM05D000936 ORTHO05D005107 7.7e-16 86.7 56 71.4
MD10G1219900 Malus domestica HOM05D000936 ORTHO05D005107 7.7e-16 86.7 54 79.6
Pp3c6_11470 Physcomitrium patens HOM05D000936 ORTHO05D005107 6.5e-15 83.6 56 69.6
BcaC04g22061 Brassica carinata HOM05D000936 ORTHO05D005107 1.5e-14 82.4 57 73.7
C09p23950 Brassica napus HOM05D000696 ORTHO05D005107 1.5e-14 82.4 57 73.7
PRCOL_00001508 Prasinoderma coloniale HOM05D000936 ORTHO05D005107 1.9e-14 82.0 61 63.9
RcHm_v2.0_Chr2g0171001 Rosa chinensis HOM05D000936 ORTHO05D005107 1.9e-14 82.0 75 62.7
MD10G1220400 Malus domestica HOM05D000936 ORTHO05D005107 7.2e-14 80.1 56 71.4
Mapoly0025s0137 Marchantia polymorpha HOM05D000936 ORTHO05D005107 7.2e-14 80.1 61 60.7
MD10G1220200 Malus domestica HOM05D000936 ORTHO05D005107 9.4e-14 79.7 54 74.1
Cre10.g439000 Chlamydomonas reinhardtii HOM05D000936 ORTHO05D005107 2.1e-13 78.6 61 62.3
MCO13G518 Micromonas commoda HOM05D000936 ORTHO05D005107 8.0e-13 76.6 61 62.3
CBR_g26493 Chara braunii HOM05D000936 ORTHO05D005107 1.8e-12 75.5 56 64.3
Pp3c5_21800 Physcomitrium patens HOM05D000936 ORTHO05D005107 6.3e-10 67.0 52 63.5
MBI09_g37386_MAGBIO Magnolia biondii HOM05D001895 ORTHO05D022876 1.6e-08 62.4 45 73.3
FAN11G1021 Fragaria x ananassa HOM05D000936 ORTHO05D005107 5.9e-08 60.5 33 84.8
SMO174G0196 Selaginella moellendorffii HOM05D000936 ORTHO05D005107 1.5e-06 55.8 56 48.2
SMO268G0022 Selaginella moellendorffii HOM05D000936 ORTHO05D005107 1.5e-06 55.8 56 48.2
SMO296G0002 Selaginella moellendorffii HOM05D000936 ORTHO05D005107 1.5e-06 55.8 56 48.2
SMO308G0071 Selaginella moellendorffii HOM05D000936 ORTHO05D005107 2.5e-06 55.1 56 48.2
SMO268G0012 Selaginella moellendorffii HOM05D000936 ORTHO05D005107 3.3e-06 54.7 56 48.2
SMO296G0015 Selaginella moellendorffii HOM05D000936 ORTHO05D005107 3.3e-06 54.7 56 48.2


User provided reference genes

Program Settings