Gene: AT1G54350

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G54350
  • Transcript Identifier AT1G54350.1
  • Gene Type Coding gene
  • Location Chr1 : 20286917-20290245 : positive

Gene Family Information

  • ID HOM05D000936
  • #Genes/#Species 645/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G54350.1
  • symbol ABCD2
  • full_name ATP-binding cassette D2
  • uniprot Q6NLC1

Descriptions

  • Description ABC transporter family protein
  • Computational description ABC transporter family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport, transmembrane transport; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA type, core (InterPro:IPR003593), ABC transporter, N-terminal (InterPro:IPR010509), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: peroxisomal ABC transporter 1 (TAIR:AT4G39850.3); Has 196809 Blast hits to 191927 proteins in 3574 species: Archae - 3050; Bacteria - 158969; Metazoa - 4367; Fungi - 3288; Plants - 2549; Viruses - 3; Other Eukaryotes - 24583 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006221
ISO
PLAZA Homology (enrichment)pyrimidine nucleotide biosynthetic process HOM05D000936
GO:0006241
ISO
PLAZA Homology (enrichment)CTP biosynthetic process HOM05D000936
GO:0055085
IEA
GOA Databasetransmembrane transport
GO:0055085
IEA
InterProtransmembrane transport
GO:0042760
IBA
Gene Ontologyvery long-chain fatty acid catabolic process1
GO:0015910
IBA
Gene Ontologylong-chain fatty acid import into peroxisome1
GO:0007031
IBA
Gene Ontologyperoxisome organization1
GO:0006635
IBA
Gene Ontologyfatty acid beta-oxidation1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003883
ISO
PLAZA Homology (enrichment)CTP synthase activity HOM05D000936
GO:0140359
IEA
Gene OntologyABC-type transporter activity
GO:0140359
IEA
InterProABC-type transporter activity
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IBA
Gene OntologyATP binding1
GO:0005524
IEA
InterProATP binding
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0005324
IBA
Gene Ontologylong-chain fatty acid transporter activity1
GO:0042626
ISS, IBA
Gene OntologyATPase-coupled transmembrane transporter activity1 2

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016020
IEA
GOA Databasemembrane
GO:0016021
IEA
GOA Databaseintegral component of membrane
GO:0016021
IEA
InterProintegral component of membrane
GO:0009536
IEA
GOA Databaseplastid
GO:0009507
IDA
IEA
GOA Databasechloroplast
GO:0009507
HDA
ISM
Gene Ontologychloroplast3
GO:0005778
IBA
Gene Ontologyperoxisomal membrane1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036640 ABC transporter type 1, transmembrane domain superfamily
IPR011527 ABC transporter type 1, transmembrane domain
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR003439 ABC transporter-like, ATP-binding domain
IPR003593 AAA+ ATPase domain
Mapman id Description
24.1.3.1.3 Solute transport.primary active transport.ABC superfamily.ABC1 family.subfamily ABCD transporter