Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0690F.1_g203840 Hydrangea macrophylla HOM05D000251 ORTHO05D007889 1.7e-19 98.2 46 100.0
Hma1.2p1_0595F.1_g186100 Hydrangea macrophylla HOM05D000251 ORTHO05D007889 2.8e-17 90.9 46 93.5
Dinv36870 Davidia involucrata HOM05D000251 ORTHO05D007889 3.1e-16 87.4 46 89.1
Atru.chr9.705 Acer truncatum HOM05D000251 ORTHO05D007889 6.8e-16 86.3 46 84.8
Rhsim08G0139200 Rhododendron simsii HOM05D000251 ORTHO05D007889 6.8e-16 86.3 46 89.1
Rhsim08G0149100 Rhododendron simsii HOM05D000251 ORTHO05D007889 6.8e-16 86.3 46 89.1
vmacro17646 Vaccinium macrocarpon HOM05D000251 ORTHO05D007889 1.5e-15 85.1 46 87.0
Solyc03g114410.3 Solanum lycopersicum HOM05D000251 ORTHO05D007889 3.4e-15 84.0 46 84.8
Sopen03g033510 Solanum pennellii HOM05D000251 ORTHO05D007889 3.4e-15 84.0 46 84.8
Actinidia31039 Actinidia chinensis HOM05D000251 ORTHO05D007889 4.4e-15 83.6 46 87.0
Potri.012G058100 Populus trichocarpa HOM05D000251 ORTHO05D007889 4.4e-15 83.6 46 84.8
Manes.05G117300 Manihot esculenta HOM05D000251 ORTHO05D007889 5.8e-15 83.2 46 82.6
arahy.Tifrunner.gnm1.ann1.ESZ5GR Arachis hypogaea HOM05D000251 ORTHO05D007889 9.9e-15 82.4 46 82.6
arahy.Tifrunner.gnm1.ann1.MAJ7P0 Arachis hypogaea HOM05D000251 ORTHO05D007889 9.9e-15 82.4 46 82.6
CAN.G781.3 Capsicum annuum HOM05D000251 ORTHO05D007889 9.9e-15 82.4 46 84.8
Cc04_g07720 Coffea canephora HOM05D000251 ORTHO05D007889 9.9e-15 82.4 46 87.0
Eucgr.K02644 Eucalyptus grandis HOM05D000251 ORTHO05D007889 1.7e-14 81.6 46 82.6
Nn4g23656 Nelumbo nucifera HOM05D000251 ORTHO05D007889 1.7e-14 81.6 46 80.4
Nitab4.5_0000646g0050 Nicotiana tabacum HOM05D000251 ORTHO05D007889 1.7e-14 81.6 46 82.6
Nitab4.5_0004342g0020 Nicotiana tabacum HOM05D000251 ORTHO05D007889 1.7e-14 81.6 46 82.6
Gohir.D03G100900 Gossypium hirsutum HOM05D000251 ORTHO05D007889 2.2e-14 81.3 46 80.4
Gorai.003G106300 Gossypium raimondii HOM05D000251 ORTHO05D007889 2.2e-14 81.3 46 80.4
TAR622G0769 Trochodendron aralioides HOM05D000251 ORTHO05D007889 2.2e-14 81.3 46 80.4
CSS0040641 Camellia sinensis var. sinensis HOM05D000251 ORTHO05D007889 2.9e-14 80.9 46 82.6
CiPaw.15G123200 Carya illinoinensis HOM05D000251 ORTHO05D007889 2.9e-14 80.9 46 82.6
Ciclev10018692m.g Citrus clementina HOM05D000251 ORTHO05D007889 3.7e-14 80.5 46 80.4
Prupe.5G214300 Prunus persica HOM05D000251 ORTHO05D007889 3.7e-14 80.5 46 84.8
GSVIVG01008206001 Vitis vinifera HOM05D000251 ORTHO05D007889 3.7e-14 80.5 46 80.4
Cpa.g.sc13.78 Carica papaya HOM05D000251 ORTHO05D007889 6.4e-14 79.7 46 78.3
Gohir.A03G074400 Gossypium hirsutum HOM05D000251 ORTHO05D007889 6.4e-14 79.7 46 80.4
CsaV3_1G003490 Cucumis sativus L. HOM05D000251 ORTHO05D007889 8.3e-14 79.3 46 80.4
QL10p022316 Quercus lobata HOM05D000251 ORTHO05D007889 8.3e-14 79.3 46 82.6
Sc10g0009620 Simmondsia chinensis HOM05D000251 ORTHO05D007889 8.3e-14 79.3 46 82.6
Peaxi162Scf00017g03036 Petunia axillaris HOM05D000251 ORTHO05D007889 1.1e-13 79.0 46 78.3
PGR044G2008 Punica granatum HOM05D000251 ORTHO05D007889 1.1e-13 79.0 46 78.3
Cfa019845 Carpinus fangiana HOM05D000251 ORTHO05D007889 1.9e-13 78.2 46 78.3
Sabra12G0041800 Salix brachista HOM05D000251 ORTHO05D007889 1.9e-13 78.2 46 78.3
AT5G23080 Arabidopsis thaliana HOM05D000251 ORTHO05D007889 2.4e-13 77.8 46 82.6
CANSAT80G2803 Cannabis sativa HOM05D000251 ORTHO05D007889 2.4e-13 77.8 46 78.3
MELO3C017274.2 Cucumis melo HOM05D000251 ORTHO05D007889 2.4e-13 77.8 46 78.3
Duzib205G0552 Durio zibethinus HOM05D000251 ORTHO05D007889 2.4e-13 77.8 46 76.1
AL6G34270 Arabidopsis lyrata HOM05D000251 ORTHO05D007889 3.2e-13 77.4 46 82.6
ECA246G2449 Erigeron canadensis HOM05D000251 ORTHO05D007889 3.2e-13 77.4 46 78.3
Thhalv10003608m.g Eutrema salsugineum HOM05D000251 ORTHO05D007889 3.2e-13 77.4 46 82.6
Lsat_1_v5_gn_5_24161 Lactuca sativa HOM05D000251 ORTHO05D007889 3.2e-13 77.4 46 78.3
Lj9C433G11 Lonicera japonica HOM05D000251 ORTHO05D007889 3.2e-13 77.4 47 83.0
Hund02531 Selenicereus undatus HOM05D000251 ORTHO05D007889 3.2e-13 77.4 46 78.3
ClCG06G015150 Citrullus lanatus HOM05D000251 ORTHO05D007889 4.1e-13 77.0 46 76.1
Haze_18572 Corylus avellana HOM05D000251 ORTHO05D007889 4.1e-13 77.0 46 76.1
Medtr4g112420 Medicago truncatula HOM05D000251 ORTHO05D007889 4.1e-13 77.0 46 78.3
Sp2g24040 Schrenkiella parvula HOM05D000251 ORTHO05D007889 4.1e-13 77.0 46 82.6
TPR.G2793 Trifolium pratense HOM05D000251 ORTHO05D007889 4.1e-13 77.0 46 78.3
Lalb_Chr12g0197521 Lupinus albus HOM05D000251 ORTHO05D007889 5.4e-13 76.6 46 73.9
MD14G1219700 Malus domestica HOM05D000251 ORTHO05D007889 5.4e-13 76.6 46 78.3
Thecc.03G114900 Theobroma cacao HOM05D000251 ORTHO05D007889 5.4e-13 76.6 46 78.3
VMungo1215G2774 Vigna mungo HOM05D000251 ORTHO05D007889 5.4e-13 76.6 46 73.9
Carub.0006s2087 Capsella rubella HOM05D000251 ORTHO05D007889 7.1e-13 76.3 46 80.4
Ca_02522_v3 Cicer arietinum L. HOM05D000251 ORTHO05D007889 7.1e-13 76.3 46 78.3
DCAR_015126 Daucus carota HOM05D000251 ORTHO05D007889 9.2e-13 75.9 47 78.7
Ah.02g114430 Amaranthus hybridus HOM05D000169 ORTHO05D000542 1.2e-12 75.5 46 78.3
AUR62032169 Chenopodium quinoa HOM05D000251 ORTHO05D007889 1.2e-12 75.5 46 73.9
MD06G1209200 Malus domestica HOM05D000251 ORTHO05D007889 1.2e-12 75.5 46 76.1
Aa31LG11G2570 Aethionema arabicum HOM05D000251 ORTHO05D007889 1.6e-12 75.1 46 80.4
Sed0011411 Sechium edule HOM05D000251 ORTHO05D007889 1.6e-12 75.1 46 73.9
Glyma.05G015200 Glycine max HOM05D000251 ORTHO05D007889 2.1e-12 74.7 46 73.9
Lj4g0022759 Lotus japonicus HOM05D000251 ORTHO05D007889 2.1e-12 74.7 46 73.9
AUR62036928 Chenopodium quinoa HOM05D000251 ORTHO05D007889 2.7e-12 74.3 46 73.9
COL.COLO4_32187 Corchorus olitorius HOM05D000251 ORTHO05D007889 2.7e-12 74.3 46 71.7
HanXRQChr05g0157761 Helianthus annuus HOM05D000251 ORTHO05D007889 2.7e-12 74.3 46 76.1
THA.LOC104819385 Tarenaya hassleriana HOM05D000251 ORTHO05D007889 2.7e-12 74.3 46 76.1
EL10Ac5g11229 Beta vulgaris HOM05D000251 ORTHO05D007889 3.5e-12 73.9 46 78.3
FvH4_5g12911 Fragaria vesca HOM05D000251 ORTHO05D007889 3.5e-12 73.9 47 76.6
FAN13G2548 Fragaria x ananassa HOM05D000251 ORTHO05D000414 3.5e-12 73.9 47 76.6
FAN18G2230 Fragaria x ananassa HOM05D000251 ORTHO05D007889 3.5e-12 73.9 47 76.6
FAN18G3790 Fragaria x ananassa HOM05D000251 ORTHO05D007889 3.5e-12 73.9 47 76.6
RcHm_v2.0_Chr7g0184311 Rosa chinensis HOM05D000251 ORTHO05D007889 3.5e-12 73.9 47 76.6
TWI81G0067 Tripterygium wilfordii HOM05D000251 ORTHO05D007889 4.6e-12 73.6 46 78.3
unitig_736.g22471 Utricularia gibba HOM05D000251 ORTHO05D007889 4.6e-12 73.6 47 76.6
Glyma.17G123700 Glycine max HOM05D000251 ORTHO05D007889 7.8e-12 72.8 46 71.7
Psat4g045640 Pisum sativum HOM05D000251 ORTHO05D007889 7.8e-12 72.8 46 76.1
SGA_v2.0_scaffold283G46981 Striga asiatica HOM05D000251 ORTHO05D007889 7.8e-12 72.8 47 76.6
BcaB04g19889 Brassica carinata HOM05D000251 ORTHO05D007889 1.0e-11 72.4 46 76.1
A09p07070 Brassica napus HOM05D000251 ORTHO05D007889 1.0e-11 72.4 46 76.1
C07p44450 Brassica napus HOM05D000251 ORTHO05D007889 1.0e-11 72.4 46 76.1
BolC7t44966H Brassica oleracea HOM05D000251 ORTHO05D007889 1.0e-11 72.4 46 76.1
BraA09t36355Z Brassica rapa HOM05D000251 ORTHO05D007889 1.0e-11 72.4 46 76.1
Migut.G01282 Erythranthe guttata HOM05D000251 ORTHO05D007889 1.3e-11 72.0 47 74.5
SalBow2G1753 Salvia bowleyana HOM05D000251 ORTHO05D007889 1.3e-11 72.0 44 81.8
SHI18972 Sapria himalayana HOM05D000251 ORTHO05D007889 1.3e-11 72.0 46 69.6
BcaC04g23479 Brassica carinata HOM05D000251 ORTHO05D007889 2.3e-11 71.2 46 73.9
C09p07920 Brassica napus HOM05D000251 ORTHO05D007889 2.3e-11 71.2 46 73.9
BolC9t53705H Brassica oleracea HOM05D000251 ORTHO05D007889 2.3e-11 71.2 46 73.9
A03p46430 Brassica napus HOM05D000251 ORTHO05D007889 3.0e-11 70.9 46 73.9
BraA03t13769Z Brassica rapa HOM05D000251 ORTHO05D007889 3.0e-11 70.9 46 73.9
PSO478G4362 Papaver somniferum HOM05D000251 ORTHO05D007889 3.0e-11 70.9 46 67.4
Aqoxy3G00409 Aquilegia oxysepala HOM05D000251 ORTHO05D007889 3.9e-11 70.5 47 72.3
CDE08G0099 Ceratophyllum demersum HOM05D000251 ORTHO05D007889 3.9e-11 70.5 46 73.9
PSO017G5760 Papaver somniferum HOM05D000251 ORTHO05D007889 8.6e-11 69.3 46 67.4
ATR0723G093 Amborella trichopoda HOM05D000251 ORTHO05D007889 5.6e-10 66.6 46 65.2
Os06g0489200 Oryza sativa ssp. japonica HOM05D000251 ORTHO05D007889 3.6e-09 63.9 45 71.1
AagrBONN_evm.TU.Sc2ySwM_344.5190 Anthoceros agrestis HOM05D000251 ORTHO05D007889 3.8e-06 53.9 45 51.1
SEGI_18733 Sequoiadendron giganteum HOM05D000251 ORTHO05D007889 6.4e-06 53.1 45 51.1


User provided reference genes

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