Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0682F.1_g202710 Hydrangea macrophylla HOM05D003909 ORTHO05D004478 2.5e-202 708.8 412 100.0
Dinv30518 Davidia involucrata HOM05D003909 ORTHO05D004478 1.7e-142 510.0 436 68.3
Dinv38052 Davidia involucrata HOM05D003909 ORTHO05D004478 2.6e-135 486.1 436 70.6
Lj9P507T43 Lonicera japonica HOM05D003909 ORTHO05D004478 2.9e-126 456.1 435 62.1
Actinidia32764 Actinidia chinensis HOM05D003909 ORTHO05D004478 1.2e-124 450.7 441 68.3
Hma1.2p1_0323F.1_g125230 Hydrangea macrophylla HOM05D003909 ORTHO05D004478 2.7e-124 449.5 435 65.3
Lj5C61T11 Lonicera japonica HOM05D003909 ORTHO05D004478 2.6e-122 443.0 436 59.9
CSS0044508 Camellia sinensis var. sinensis HOM05D003909 ORTHO05D004478 2.2e-121 439.9 427 67.0
Actinidia01799 Actinidia chinensis HOM05D001315 ORTHO05D001618 4.1e-120 435.6 436 66.1
Rhsim12G0197200 Rhododendron simsii HOM05D003909 ORTHO05D004478 5.0e-118 428.7 428 63.1
CSS0004276 Camellia sinensis var. sinensis HOM05D003909 ORTHO05D004478 4.7e-116 422.2 432 63.7
Actinidia08971 Actinidia chinensis HOM05D003909 ORTHO05D004478 5.2e-115 418.7 435 62.5
QL05p024883 Quercus lobata HOM05D003909 ORTHO05D004478 1.5e-114 417.2 442 59.7
QL05p024997 Quercus lobata HOM05D003909 ORTHO05D004478 1.5e-114 417.2 442 59.7
Manes.11G048200 Manihot esculenta HOM05D003909 ORTHO05D004478 2.9e-113 412.9 460 63.5
TAR626G0719 Trochodendron aralioides HOM05D003909 ORTHO05D004478 4.1e-112 409.1 445 58.2
vmacro18921 Vaccinium macrocarpon HOM05D003909 ORTHO05D004478 1.0e-110 404.4 414 59.4
Nitab4.5_0006801g0020 Nicotiana tabacum HOM05D003909 ORTHO05D004478 1.3e-110 404.1 452 61.3
Aqoxy7G01805 Aquilegia oxysepala HOM05D003909 ORTHO05D004478 3.9e-110 402.5 421 58.9
CiPaw.02G151900 Carya illinoinensis HOM05D003909 ORTHO05D004478 3.9e-110 402.5 416 60.6
TAR383G0140 Trochodendron aralioides HOM05D003909 ORTHO05D004478 1.1e-109 401.0 449 57.0
COL.COLO4_30356 Corchorus olitorius HOM05D003909 ORTHO05D004478 2.5e-109 399.8 466 59.2
Peaxi162Scf00015g10039 Petunia axillaris HOM05D003909 ORTHO05D004478 5.6e-109 398.7 458 57.0
Cc04_g03530 Coffea canephora HOM05D003909 ORTHO05D004478 7.3e-109 398.3 439 57.4
Thecc.06G085100 Theobroma cacao HOM05D003909 ORTHO05D004478 2.1e-108 396.7 472 57.8
TAR636G1173 Trochodendron aralioides HOM05D003909 ORTHO05D004478 2.8e-108 396.4 447 57.9
Solyc03g120280.1 Solanum lycopersicum HOM05D003909 ORTHO05D004478 3.6e-108 396.0 453 57.6
Nitab4.5_0000671g0020 Nicotiana tabacum HOM05D003909 ORTHO05D004478 8.0e-108 394.8 454 61.5
CiPaw.01G240200 Carya illinoinensis HOM05D003909 ORTHO05D004478 1.4e-107 394.0 416 58.4
Rhsim08G0220400 Rhododendron simsii HOM05D003909 ORTHO05D004478 1.8e-107 393.7 382 64.4
Atru.chr1.3248 Acer truncatum HOM05D003909 ORTHO05D004478 4.4e-106 389.0 472 59.5
Duzib192G0576 Durio zibethinus HOM05D003909 ORTHO05D004478 4.4e-106 389.0 469 55.7
Haze_16447 Corylus avellana HOM05D003909 ORTHO05D004478 5.8e-106 388.7 440 56.8
Duzib160G0939 Durio zibethinus HOM05D003909 ORTHO05D004478 7.5e-106 388.3 469 55.0
Lsat_1_v5_gn_1_34841 Lactuca sativa HOM05D003909 ORTHO05D004478 1.7e-105 387.1 420 56.7
ECA247G1970 Erigeron canadensis HOM05D003909 ORTHO05D004478 2.9e-105 386.3 421 63.4
Manes.04G122500 Manihot esculenta HOM05D003909 ORTHO05D004478 2.9e-105 386.3 449 61.5
MD09G1214400 Malus domestica HOM05D003909 ORTHO05D004478 3.7e-105 386.0 433 58.9
Prupe.3G072500 Prunus persica HOM05D003909 ORTHO05D004478 3.7e-105 386.0 431 60.3
CAN.G438.59 Capsicum annuum HOM05D003909 ORTHO05D004478 3.5e-103 379.4 456 56.6
Cfa002057 Carpinus fangiana HOM05D003909 ORTHO05D004478 4.6e-103 379.0 441 56.2
MD17G1196800 Malus domestica HOM05D003909 ORTHO05D004478 7.8e-103 378.3 438 59.1
Ciclev10025626m.g Citrus clementina HOM05D003909 ORTHO05D004478 1.3e-102 377.5 458 53.5
Sopen03g039170 Solanum pennellii HOM05D003909 ORTHO05D004478 5.0e-102 375.6 453 53.2
MSTRG.4728 Avicennia marina HOM05D003909 ORTHO05D004478 4.3e-101 372.5 446 57.2
Potri.001G179100 Populus trichocarpa HOM05D003909 ORTHO05D004478 4.3e-101 372.5 508 53.5
Sabra01G0147800 Salix brachista HOM05D003909 ORTHO05D004478 7.3e-101 371.7 502 49.2
GSVIVG01017123001 Vitis vinifera HOM05D003909 ORTHO05D004478 1.6e-100 370.5 412 57.0
TWI18G1146 Tripterygium wilfordii HOM05D003909 ORTHO05D004478 3.6e-100 369.4 471 59.0
TWI75G1291 Tripterygium wilfordii HOM05D003909 ORTHO05D004478 1.1e-99 367.9 448 54.0
HanXRQChr10g0314961 Helianthus annuus HOM05D003909 ORTHO05D004478 1.8e-99 367.1 449 57.5
FvH4_6g31000 Fragaria vesca HOM05D003909 ORTHO05D004478 2.3e-99 366.7 451 52.8
Nitab4.5_0002327g0010 Nicotiana tabacum HOM05D003909 ORTHO05D004478 2.3e-99 366.7 454 53.5
Eucgr.F02948 Eucalyptus grandis HOM05D003909 ORTHO05D004478 3.1e-99 366.3 431 53.4
Nitab4.5_0000351g0150 Nicotiana tabacum HOM05D003909 ORTHO05D004478 8.9e-99 364.8 457 52.1
PSO782G4639 Papaver somniferum HOM05D003909 ORTHO05D004478 2.6e-98 363.2 428 61.2
Lj3g0018129 Lotus japonicus HOM05D003909 ORTHO05D004478 4.4e-98 362.5 458 51.5
Potri.003G056400 Populus trichocarpa HOM05D003909 ORTHO05D004478 5.8e-98 362.1 534 46.8
PSO063G3399 Papaver somniferum HOM05D003909 ORTHO05D004478 2.9e-97 359.8 424 60.1
Sabra03G0031800 Salix brachista HOM05D003909 ORTHO05D004478 2.9e-97 359.8 502 49.0
FAN02G1452 Fragaria x ananassa HOM05D003909 ORTHO05D004478 3.7e-97 359.4 453 58.9
PGSC0003DMG400002641 Solanum tuberosum HOM05D003909 ORTHO05D004478 4.9e-97 359.0 451 51.7
CAN.G395.16 Capsicum annuum HOM05D003909 ORTHO05D004478 8.3e-97 358.2 451 51.7
FAN05G4496 Fragaria x ananassa HOM05D003909 ORTHO05D004478 8.3e-97 358.2 447 58.6
Phvul.005G172100 Phaseolus vulgaris HOM05D003909 ORTHO05D004478 2.1e-95 353.6 475 53.7
Oeu033481.1 Olea europaea HOM05D003909 ORTHO05D004478 3.0e-94 349.7 462 58.7
Gohir.A02G122200 Gossypium hirsutum HOM05D003909 ORTHO05D004478 5.1e-94 349.0 470 55.7
MSTRG.22695 Avicennia marina HOM05D003909 ORTHO05D004478 6.6e-94 348.6 489 48.5
MBI04_g18158_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 6.6e-94 348.6 430 53.3
ClCG09G002210 Citrullus lanatus HOM05D003909 ORTHO05D004478 1.5e-93 347.4 505 48.3
Glyma.15G013600 Glycine max HOM05D003909 ORTHO05D004478 1.9e-93 347.1 471 53.9
Cpa.g.c31444.1 Carica papaya HOM05D003909 ORTHO05D004478 2.5e-93 346.7 488 47.7
CsaV3_7G033090 Cucumis sativus L. HOM05D003909 ORTHO05D004478 5.6e-93 345.5 491 55.0
MELO3C024224.2 Cucumis melo HOM05D003909 ORTHO05D004478 1.2e-92 344.4 493 54.0
Glyma.13G360300 Glycine max HOM05D003909 ORTHO05D004478 1.2e-92 344.4 481 50.9
Gorai.002G058700 Gossypium raimondii HOM05D003909 ORTHO05D004478 2.8e-92 343.2 466 54.5
VMungo1080G0623 Vigna mungo HOM05D003909 ORTHO05D004478 1.4e-91 340.9 468 50.6
Gohir.D03G074300 Gossypium hirsutum HOM05D003909 ORTHO05D004478 3.1e-91 339.7 470 54.9
arahy.Tifrunner.gnm1.ann1.63P8XR Arachis hypogaea HOM05D003909 ORTHO05D004478 5.2e-91 339.0 466 56.0
Migut.I00858 Erythranthe guttata HOM05D003909 ORTHO05D004478 5.2e-91 339.0 444 53.4
ATR1120G115 Amborella trichopoda HOM05D003909 ORTHO05D004478 6.8e-91 338.6 466 51.9
HanXRQChr02g0032691 Helianthus annuus HOM05D003909 ORTHO05D004478 6.8e-91 338.6 454 55.1
Sed0003438 Sechium edule HOM05D003909 ORTHO05D004478 6.8e-91 338.6 492 53.0
Thhalv10020773m.g Eutrema salsugineum HOM05D003909 ORTHO05D004478 2.6e-90 336.7 445 49.7
AUR62016436 Chenopodium quinoa HOM05D003909 ORTHO05D004478 7.6e-90 335.1 442 50.9
Sopen06g025020 Solanum pennellii HOM05D003909 ORTHO05D004478 1.3e-89 334.3 458 50.9
Solyc06g066740.3 Solanum lycopersicum HOM05D003909 ORTHO05D004478 2.2e-89 333.6 460 54.3
Medtr4g011930 Medicago truncatula HOM05D003909 ORTHO05D004478 2.9e-89 333.2 456 50.7
CANSAT56G2173 Cannabis sativa HOM05D003909 ORTHO05D004478 3.7e-89 332.8 448 48.4
AUR62011621 Chenopodium quinoa HOM05D003909 ORTHO05D004478 4.9e-89 332.4 442 51.1
Ah.01g006030 Amaranthus hybridus HOM05D003909 ORTHO05D004478 8.4e-89 331.6 457 50.8
TPR.G24152 Trifolium pratense HOM05D003909 ORTHO05D004478 1.9e-88 330.5 449 53.2
Ca_20399_v3 Cicer arietinum L. HOM05D003909 ORTHO05D004478 4.1e-88 329.3 448 51.3
PGR102G2609 Punica granatum HOM05D003909 ORTHO05D004478 5.4e-88 328.9 472 51.7
Ah.01g021220 Amaranthus hybridus HOM05D003909 ORTHO05D004478 4.6e-87 325.9 454 52.0
AL3G28620 Arabidopsis lyrata HOM05D003909 ORTHO05D004478 2.3e-86 323.6 484 46.5
EL10Ac9g21982 Beta vulgaris HOM05D003909 ORTHO05D004478 2.3e-86 323.6 456 52.0
Aa31LG8G3120 Aethionema arabicum HOM05D003909 ORTHO05D004478 3.9e-86 322.8 472 46.4
DCAR_026310 Daucus carota HOM05D003909 ORTHO05D004478 5.1e-86 322.4 474 53.4
Sp3g14320 Schrenkiella parvula HOM05D003909 ORTHO05D004478 5.1e-86 322.4 439 50.1
Lalb_Chr22g0351201 Lupinus albus HOM05D003909 ORTHO05D004478 6.6e-86 322.0 454 53.7
Sc15g0001250 Simmondsia chinensis HOM05D003909 ORTHO05D004478 1.5e-85 320.9 458 50.7
Nn8g39239 Nelumbo nucifera HOM05D003909 ORTHO05D004478 2.5e-85 320.1 235 74.5
Carub.0003s1570 Capsella rubella HOM05D003909 ORTHO05D004478 3.3e-85 319.7 457 48.6
CARHR091100 Cardamine hirsuta HOM05D003909 ORTHO05D004478 7.3e-85 318.5 466 45.7
Carub.0001s4138 Capsella rubella HOM05D003909 ORTHO05D004478 1.2e-84 317.8 456 46.9
MBI01_g16632_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 2.8e-84 316.6 411 51.6
SEGI_39159 Sequoiadendron giganteum HOM05D003909 ORTHO05D004478 1.8e-83 313.9 475 47.4
AT1G52380 Arabidopsis thaliana HOM05D003909 ORTHO05D004478 3.1e-83 313.2 458 46.5
AT3G15970 Arabidopsis thaliana HOM05D003909 ORTHO05D004478 3.1e-83 313.2 481 44.5
Nn2g11803 Nelumbo nucifera HOM05D003909 ORTHO05D004478 4.0e-83 312.8 241 72.2
AL1G60630 Arabidopsis lyrata HOM05D003909 ORTHO05D004478 1.2e-82 311.2 459 47.9
Sed0010123 Sechium edule HOM05D003909 ORTHO05D004478 1.2e-82 311.2 496 49.0
PGSC0003DMG400016510 Solanum tuberosum HOM05D003909 ORTHO05D004478 1.5e-82 310.8 456 47.8
SGA_v2.0_scaffold5G02599 Striga asiatica HOM05D003909 ORTHO05D004478 1.5e-82 310.8 438 53.9
THA.LOC104810518 Tarenaya hassleriana HOM05D003909 ORTHO05D004478 1.5e-82 310.8 451 53.0
THA.LOC104818004 Tarenaya hassleriana HOM05D003909 ORTHO05D004478 1.5e-82 310.8 442 51.1
Psat7g253000 Pisum sativum HOM05D003909 ORTHO05D004478 6.4e-81 305.4 411 51.3
HanXRQChr04g0096531 Helianthus annuus HOM05D003909 ORTHO05D004478 3.2e-80 303.1 493 49.3
unitig_21.g20517 Utricularia gibba HOM05D003909 ORTHO05D004478 2.1e-79 300.4 458 44.5
Lalb_Chr24g0395791 Lupinus albus HOM05D003909 ORTHO05D004478 7.8e-79 298.5 476 46.4
CARHR042530 Cardamine hirsuta HOM05D003909 ORTHO05D004478 1.0e-78 298.1 438 47.9
Sp1g38990 Schrenkiella parvula HOM05D003909 ORTHO05D004478 3.0e-78 296.6 464 47.8
Lalb_Chr14g0373481 Lupinus albus HOM05D003909 ORTHO05D004478 1.5e-77 294.3 471 48.2
BolC6t35869H Brassica oleracea HOM05D003909 ORTHO05D004478 6.2e-76 288.9 419 45.8
Os05g0349500 Oryza sativa ssp. japonica HOM05D003909 ORTHO05D004478 1.4e-75 287.7 491 43.0
BraA06t23402Z Brassica rapa HOM05D003909 ORTHO05D004478 4.0e-75 286.2 426 47.4
C06p07830 Brassica napus HOM05D003909 ORTHO05D004478 1.2e-74 284.6 420 45.7
BcaB02g10997 Brassica carinata HOM05D003909 ORTHO05D004478 1.5e-74 284.3 441 47.2
BcaC08g43991 Brassica carinata HOM05D003909 ORTHO05D004478 2.0e-74 283.9 449 45.2
C06p13960 Brassica napus HOM05D003909 ORTHO05D004478 2.0e-74 283.9 449 45.2
BolC6t36574H Brassica oleracea HOM05D001315 ORTHO05D001618 2.0e-74 283.9 449 45.2
A06p01850 Brassica napus HOM05D003909 ORTHO05D004478 3.4e-74 283.1 429 46.9
Thhalv10011504m.g Eutrema salsugineum HOM05D003909 ORTHO05D004478 5.8e-74 282.3 448 47.8
SalBow2G1612 Salvia bowleyana HOM05D003909 ORTHO05D004478 7.6e-74 282.0 374 48.9
A05p19040 Brassica napus HOM05D003909 ORTHO05D004478 2.2e-73 280.4 449 45.2
BraA05t20804Z Brassica rapa HOM05D003909 ORTHO05D004478 4.9e-73 279.3 449 45.0
Aa31LG10G2540 Aethionema arabicum HOM05D003909 ORTHO05D004478 3.2e-72 276.6 445 46.1
RcHm_v2.0_Chr2g0137631 Rosa chinensis HOM05D003909 ORTHO05D004478 2.7e-71 273.5 413 48.9
HPP92_019977 Vanilla planifolia HOM05D003909 ORTHO05D004478 3.0e-70 270.0 466 43.8
Zm00001eb360880 Zea mays HOM05D003909 ORTHO05D004478 6.0e-63 245.7 452 44.9
SEGI_02359 Sequoiadendron giganteum HOM05D003909 ORTHO05D004478 4.8e-60 236.1 456 42.8
BcaC01g03847 Brassica carinata HOM05D003909 ORTHO05D004478 4.0e-59 233.0 415 44.8
C03p47980 Brassica napus HOM05D003909 ORTHO05D004478 4.0e-59 233.0 415 44.8
BolC3t17078H Brassica oleracea HOM05D003909 ORTHO05D004478 1.2e-58 231.5 415 44.6
BcaC08g43418 Brassica carinata HOM05D003909 ORTHO05D004478 2.6e-58 230.3 415 47.2
MBI04_g40091_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 4.2e-56 223.0 323 48.3
Mapoly0073s0079 Marchantia polymorpha HOM05D003909 ORTHO05D004478 4.6e-55 219.5 481 39.3
Zm00001eb155830 Zea mays HOM05D003909 ORTHO05D004478 2.1e-52 210.7 419 40.6
BcaC08g43420 Brassica carinata HOM05D003909 ORTHO05D004478 1.6e-47 194.5 152 65.8
SHI24405 Sapria himalayana HOM05D003909 ORTHO05D004478 1.0e-46 191.8 433 39.5
AagrBONN_evm.TU.Sc2ySwM_228.3069 Anthoceros agrestis HOM05D003909 ORTHO05D004478 1.5e-45 188.0 458 41.9
CDE06G1609 Ceratophyllum demersum HOM05D003909 ORTHO05D004478 7.4e-45 185.7 332 43.4
unitig_744.g24336 Utricularia gibba HOM05D003909 ORTHO05D004478 5.9e-42 176.0 351 40.2
SMO351G0411 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 1.1e-40 171.8 422 37.7
MBI04_g43353_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 1.6e-39 167.9 176 58.0
Pp3c3_6080 Physcomitrium patens HOM05D003909 ORTHO05D004478 1.6e-39 167.9 452 39.2
Actinidia14363 Actinidia chinensis HOM05D003909 ORTHO05D004478 7.2e-32 142.5 86 79.1
CBR_g38869 Chara braunii HOM05D003909 ORTHO05D004478 9.1e-27 125.6 137 46.7
A06p01830 Brassica napus HOM05D003909 ORTHO05D004478 1.7e-25 121.3 103 62.1
BcaC01g01324 Brassica carinata HOM05D003909 ORTHO05D004478 3.3e-21 107.1 140 51.4
C03p90640 Brassica napus HOM05D003909 ORTHO05D004478 3.5e-18 97.1 142 47.9
BolC3t21386H Brassica oleracea HOM05D001315 ORTHO05D001618 3.5e-18 97.1 142 47.9
MCO12G345 Micromonas commoda HOM05D003909 ORTHO05D004478 1.3e-17 95.1 162 35.8
BraA06t23400Z Brassica rapa HOM05D003909 ORTHO05D004478 1.7e-17 94.7 89 57.3
arahy.Tifrunner.gnm1.ann1.HH7TIC Arachis hypogaea HOM05D003909 ORTHO05D004478 8.5e-17 92.4 120 55.0
Medtr1g112060 Medicago truncatula HOM05D003909 ORTHO05D004478 3.2e-16 90.5 83 65.1
Psat4g143640 Pisum sativum HOM05D002956 ORTHO05D008031 3.2e-16 90.5 137 48.9
PRCOL_00002651 Prasinoderma coloniale HOM05D003909 ORTHO05D004478 2.7e-15 87.4 234 31.6
BolC6t35871H Brassica oleracea HOM05D003909 ORTHO05D004478 6.1e-15 86.3 129 41.9
HPP92_020042 Vanilla planifolia HOM05D003909 ORTHO05D004478 8.0e-15 85.9 127 43.3
C06p07870 Brassica napus HOM05D003909 ORTHO05D004478 1.8e-14 84.7 129 41.1
unitig_744.g24337 Utricularia gibba HOM05D003909 ORTHO05D004478 1.3e-12 78.6 67 55.2
Cre15.g641000 Chlamydomonas reinhardtii HOM05D003909 ORTHO05D004478 1.1e-08 65.5 122 35.2
A03p39600 Brassica napus HOM05D003909 ORTHO05D004478 1.5e-08 65.1 409 24.7
FAN09G3670 Fragaria x ananassa HOM05D003909 ORTHO05D004478 2.1e-07 61.2 66 53.0
MBI04_g43354_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 2.7e-07 60.8 36 83.3
Cfa024721 Carpinus fangiana HOM05D003909 ORTHO05D121609 4.7e-07 60.1 78 43.6
unitig_0.g2557 Utricularia gibba HOM05D002258 ORTHO05D002539 1.0e-06 58.9 145 32.4
CSS0029378 Camellia sinensis var. sinensis HOM05D002258 ORTHO05D002539 8.8e-06 55.8 120 35.8
CSS0036996 Camellia sinensis var. sinensis HOM05D002258 ORTHO05D002539 8.8e-06 55.8 120 35.8


User provided reference genes

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