Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0196F.1_g084770 Hydrangea macrophylla HOM05D000428 ORTHO05D005608 4.9e-63 245.0 136 100.0
Dinv39964 Davidia involucrata HOM05D000428 ORTHO05D005608 2.2e-50 203.0 136 75.0
Thecc.01G038800 Theobroma cacao HOM05D000428 ORTHO05D005608 3.0e-44 182.6 136 69.1
Sed0000925 Sechium edule HOM05D000428 ORTHO05D005608 3.9e-44 182.2 136 69.9
CANSAT01G1769 Cannabis sativa HOM05D000428 ORTHO05D005608 6.7e-44 181.4 135 68.1
Manes.02G141500 Manihot esculenta HOM05D000428 ORTHO05D005608 6.7e-44 181.4 110 78.2
TAR376G0105 Trochodendron aralioides HOM05D000428 ORTHO05D005608 1.5e-43 180.3 111 77.5
Duzib147G0139 Durio zibethinus HOM05D000428 ORTHO05D005608 3.3e-43 179.1 110 78.2
Lalb_Chr03g0043151 Lupinus albus HOM05D000428 ORTHO05D005608 3.3e-43 179.1 110 80.9
CSS0045131 Camellia sinensis var. sinensis HOM05D000428 ORTHO05D005608 7.4e-43 177.9 110 80.0
Atru.chr12.2192 Acer truncatum HOM05D000428 ORTHO05D005608 9.7e-43 177.6 132 67.4
Duzib264G0582 Durio zibethinus HOM05D000428 ORTHO05D005608 9.7e-43 177.6 110 76.4
CSS0018038 Camellia sinensis var. sinensis HOM05D000428 ORTHO05D005608 4.8e-42 175.3 110 79.1
PGSC0003DMG400005746 Solanum tuberosum HOM05D000428 ORTHO05D005608 6.3e-42 174.9 110 74.5
CiPaw.01G035300 Carya illinoinensis HOM05D000428 ORTHO05D005608 8.2e-42 174.5 136 69.1
Solyc03g118800.3 Solanum lycopersicum HOM05D000428 ORTHO05D005608 8.2e-42 174.5 142 63.4
Sopen03g037750 Solanum pennellii HOM05D000428 ORTHO05D005608 8.2e-42 174.5 142 63.4
CiPaw.02G015800 Carya illinoinensis HOM05D000428 ORTHO05D005608 1.1e-41 174.1 136 67.6
MBI16_g35646_MAGBIO Magnolia biondii HOM05D000428 ORTHO05D005608 1.4e-41 173.7 139 73.4
TWI53G1177 Tripterygium wilfordii HOM05D000428 ORTHO05D005608 1.4e-41 173.7 110 78.2
Cfa018514 Carpinus fangiana HOM05D000428 ORTHO05D005608 6.9e-41 171.4 110 78.2
Sabra07G0024500 Salix brachista HOM05D000428 ORTHO05D005608 6.9e-41 171.4 136 67.6
Nitab4.5_0001456g0190 Nicotiana tabacum HOM05D000428 ORTHO05D005608 9.1e-41 171.0 110 76.4
Potri.007G028300 Populus trichocarpa HOM05D000428 ORTHO05D005608 9.1e-41 171.0 132 67.4
Sed0010481 Sechium edule HOM05D000428 ORTHO05D005608 9.1e-41 171.0 134 68.7
Actinidia19172 Actinidia chinensis HOM05D000428 ORTHO05D005608 1.2e-40 170.6 111 76.6
FvH4_7g10600 Fragaria vesca HOM05D000428 ORTHO05D005608 1.5e-40 170.2 136 68.4
FAN06G0286 Fragaria x ananassa HOM05D000428 ORTHO05D005608 1.5e-40 170.2 136 68.4
Actinidia35650 Actinidia chinensis HOM05D000428 ORTHO05D005608 2.0e-40 169.9 111 76.6
FAN06G3568 Fragaria x ananassa HOM05D000428 ORTHO05D005608 2.0e-40 169.9 136 68.4
Cpa.g.sc44.55 Carica papaya HOM05D000428 ORTHO05D005608 3.4e-40 169.1 140 65.0
Gohir.D10G093100 Gossypium hirsutum HOM05D000428 ORTHO05D005608 3.4e-40 169.1 110 74.5
Gorai.011G102300 Gossypium raimondii HOM05D000428 ORTHO05D005608 3.4e-40 169.1 110 74.5
Sabra05G0102900 Salix brachista HOM05D000428 ORTHO05D005608 3.4e-40 169.1 136 69.9
FAN10G3598 Fragaria x ananassa HOM05D000428 ORTHO05D005608 7.7e-40 167.9 136 67.6
TWI09G0303 Tripterygium wilfordii HOM05D000428 ORTHO05D005608 1.3e-39 167.2 110 76.4
RcHm_v2.0_Chr1g0348441 Rosa chinensis HOM05D000428 ORTHO05D005608 1.7e-39 166.8 136 66.9
MBI16_g36970_MAGBIO Magnolia biondii HOM05D000428 ORTHO05D005608 2.2e-39 166.4 139 70.5
FAN01G3018 Fragaria x ananassa HOM05D000428 ORTHO05D005608 3.8e-39 165.6 136 66.9
Prupe.2G134600 Prunus persica HOM05D000428 ORTHO05D005608 1.1e-38 164.1 110 76.4
Eucgr.H02772 Eucalyptus grandis HOM05D000428 ORTHO05D005608 1.9e-38 163.3 137 66.4
vmacro17854 Vaccinium macrocarpon HOM05D000428 ORTHO05D005608 2.5e-38 162.9 108 75.9
DCAR_025927 Daucus carota HOM05D000428 ORTHO05D005608 3.2e-38 162.5 108 79.6
MSTRG.23540 Avicennia marina HOM05D000428 ORTHO05D005608 4.2e-38 162.2 134 64.9
MD07G1111200 Malus domestica HOM05D000428 ORTHO05D005608 4.2e-38 162.2 110 75.5
unitig_736.g22538 Utricularia gibba HOM05D000428 ORTHO05D005608 4.2e-38 162.2 112 75.0
ClCG05G007140 Citrullus lanatus HOM05D000428 ORTHO05D005608 2.1e-37 159.8 101 79.2
Cc07_g09270 Coffea canephora HOM05D000428 ORTHO05D005608 2.1e-37 159.8 110 71.8
PGSC0003DMG400008934 Solanum tuberosum HOM05D000428 ORTHO05D005608 2.1e-37 159.8 92 80.4
Glyma.12G240700 Glycine max HOM05D000428 ORTHO05D005608 2.7e-37 159.5 136 64.7
Potri.005G125300 Populus trichocarpa HOM05D000428 ORTHO05D005608 3.6e-37 159.1 132 63.6
HanXRQChr05g0157731 Helianthus annuus HOM05D000428 ORTHO05D005608 4.7e-37 158.7 138 63.0
Lsat_1_v5_gn_5_24320 Lactuca sativa HOM05D000428 ORTHO05D005608 1.0e-36 157.5 138 65.9
Lj3g0014328 Lotus japonicus HOM05D000428 ORTHO05D005608 1.0e-36 157.5 102 77.5
MELO3C006787.2 Cucumis melo HOM05D000428 ORTHO05D005608 1.8e-36 156.8 101 78.2
CsaV3_3G015880 Cucumis sativus L. HOM05D000428 ORTHO05D005608 1.8e-36 156.8 101 78.2
VMungo1127G1890 Vigna mungo HOM05D000428 ORTHO05D005608 3.0e-36 156.0 136 63.2
Lj4C198T4 Lonicera japonica HOM05D000428 ORTHO05D005608 3.9e-36 155.6 91 85.7
Hund14143 Selenicereus undatus HOM05D000428 ORTHO05D005608 5.1e-36 155.2 113 72.6
CSS0012257 Camellia sinensis var. sinensis HOM05D000428 ORTHO05D005608 1.1e-35 154.1 93 81.7
arahy.Tifrunner.gnm1.ann1.57NA14 Arachis hypogaea HOM05D000428 ORTHO05D005608 1.5e-35 153.7 112 72.3
arahy.Tifrunner.gnm1.ann1.IVLA97 Arachis hypogaea HOM05D000428 ORTHO05D005608 2.6e-35 152.9 112 71.4
arahy.Tifrunner.gnm1.ann1.FMI53U Arachis hypogaea HOM05D000428 ORTHO05D005608 4.4e-35 152.1 112 71.4
Sc03g0000830 Simmondsia chinensis HOM05D000428 ORTHO05D005608 5.7e-35 151.8 113 69.9
Ca_17089_v3 Cicer arietinum L. HOM05D000428 ORTHO05D005608 7.4e-35 151.4 110 70.0
Dinv26816 Davidia involucrata HOM05D000001 ORTHO05D010258 9.7e-35 151.0 136 62.5
Nn1g04186 Nelumbo nucifera HOM05D000428 ORTHO05D005608 6.3e-34 148.3 111 66.7
TPR.G24896 Trifolium pratense HOM05D000428 ORTHO05D005608 8.2e-34 147.9 91 80.2
Ciclev10025862m.g Citrus clementina HOM05D000428 ORTHO05D005608 1.8e-33 146.7 138 58.7
Glyma.09G001000 Glycine max HOM05D000428 ORTHO05D005608 1.8e-33 146.7 110 70.9
PGR044G2753 Punica granatum HOM05D000428 ORTHO05D005608 4.1e-33 145.6 112 68.8
Aa31LG8G15550 Aethionema arabicum HOM05D000428 ORTHO05D005608 7.0e-33 144.8 136 60.3
arahy.Tifrunner.gnm1.ann1.ZFLV96 Arachis hypogaea HOM05D000428 ORTHO05D005608 9.1e-33 144.4 110 71.8
ECA246G0987 Erigeron canadensis HOM05D000428 ORTHO05D005608 9.1e-33 144.4 105 72.4
Peaxi162Scf00759g00212 Petunia axillaris HOM05D000428 ORTHO05D005608 9.1e-33 144.4 83 81.9
Phvul.011G214800 Phaseolus vulgaris HOM05D000428 ORTHO05D005608 9.1e-33 144.4 110 70.0
Medtr3g065190 Medicago truncatula HOM05D000428 ORTHO05D005608 2.0e-32 143.3 104 73.1
Hund16583 Selenicereus undatus HOM05D000428 ORTHO05D005608 2.6e-32 142.9 113 69.0
AUR62007997 Chenopodium quinoa HOM05D000428 ORTHO05D005608 4.5e-32 142.1 92 78.3
THA.LOC104807442 Tarenaya hassleriana HOM05D000428 ORTHO05D005608 2.2e-31 139.8 91 74.7
CARHR109120 Cardamine hirsuta HOM05D000428 ORTHO05D005608 6.5e-31 138.3 91 75.8
BcaC04g22900 Brassica carinata HOM05D000428 ORTHO05D005608 1.5e-30 137.1 93 76.3
A09p11940 Brassica napus HOM05D000428 ORTHO05D005608 1.5e-30 137.1 93 76.3
C09p14060 Brassica napus HOM05D000428 ORTHO05D005608 1.5e-30 137.1 93 76.3
BolC9t54303H Brassica oleracea HOM05D000428 ORTHO05D005608 1.5e-30 137.1 93 76.3
Migut.L00561 Erythranthe guttata HOM05D000428 ORTHO05D005608 2.5e-30 136.3 83 81.9
QL06p045519 Quercus lobata HOM05D000428 ORTHO05D005608 4.2e-30 135.6 76 88.2
THA.LOC104819794 Tarenaya hassleriana HOM05D000428 ORTHO05D005608 7.2e-30 134.8 92 75.0
COL.COLO4_22108 Corchorus olitorius HOM05D000428 ORTHO05D005608 9.4e-30 134.4 78 83.3
PSO541G5970 Papaver somniferum HOM05D000428 ORTHO05D005608 9.4e-30 134.4 89 75.3
PSO675G4237 Papaver somniferum HOM05D000428 ORTHO05D005608 9.4e-30 134.4 89 75.3
EL10Ac6g14921 Beta vulgaris HOM05D000428 ORTHO05D005608 1.2e-29 134.0 92 72.8
BraA09t36839Z Brassica rapa HOM05D000428 ORTHO05D005608 1.2e-29 134.0 93 75.3
Migut.L00293 Erythranthe guttata HOM05D000428 ORTHO05D005608 2.7e-29 132.9 83 80.7
HPP92_009245 Vanilla planifolia HOM05D000428 ORTHO05D005608 2.7e-29 132.9 79 81.0
Carub.0003s3271 Capsella rubella HOM05D000428 ORTHO05D005608 4.7e-29 132.1 110 66.4
AL3G51840 Arabidopsis lyrata HOM05D000428 ORTHO05D005608 8.0e-29 131.3 110 67.3
BcaB07g31661 Brassica carinata HOM05D000428 ORTHO05D005608 1.0e-28 131.0 136 57.4
Os10g0457000 Oryza sativa ssp. japonica HOM05D000428 ORTHO05D005608 1.0e-28 131.0 110 62.7
AT2G18510 Arabidopsis thaliana HOM05D000428 ORTHO05D005608 1.8e-28 130.2 136 58.8
Aqoxy5G01673 Aquilegia oxysepala HOM05D000428 ORTHO05D005608 2.3e-28 129.8 146 54.8
FvH4_7g10540 Fragaria vesca HOM05D000428 ORTHO05D005608 4.0e-28 129.0 113 61.9
Psat5g120280 Pisum sativum HOM05D000428 ORTHO05D005608 6.7e-28 128.3 67 91.0
AUR62003178 Chenopodium quinoa HOM05D000428 ORTHO05D005608 2.0e-27 126.7 101 69.3
Cfa017067 Carpinus fangiana HOM05D000428 ORTHO05D005608 2.6e-27 126.3 110 63.6
TAR625G0488 Trochodendron aralioides HOM05D000428 ORTHO05D005608 2.6e-27 126.3 94 68.1
Ah.03g139440 Amaranthus hybridus HOM05D000428 ORTHO05D005608 4.4e-27 125.6 109 65.1
CDE07G0828 Ceratophyllum demersum HOM05D000428 ORTHO05D005608 7.5e-27 124.8 140 57.1
A07p02180 Brassica napus HOM05D000428 ORTHO05D005608 1.7e-26 123.6 83 77.1
BolC7t40824H Brassica oleracea HOM05D000428 ORTHO05D005608 2.2e-26 123.2 83 77.1
Thhalv10022741m.g Eutrema salsugineum HOM05D000428 ORTHO05D005608 2.8e-26 122.9 83 75.9
Zm00001eb222330 Zea mays HOM05D000428 ORTHO05D005608 3.7e-26 122.5 112 59.8
BcaB07g31658 Brassica carinata HOM05D000428 ORTHO05D005608 8.2e-26 121.3 93 71.0
BcaB03g16632 Brassica carinata HOM05D000428 ORTHO05D005608 1.4e-25 120.6 110 60.9
CDE04G3638 Ceratophyllum demersum HOM05D000428 ORTHO05D005608 1.4e-25 120.6 69 81.2
BcaC06g36421 Brassica carinata HOM05D000428 ORTHO05D005608 1.8e-25 120.2 136 52.9
Zm00001eb046700 Zea mays HOM05D000428 ORTHO05D005608 3.1e-25 119.4 113 58.4
Thhalv10023032m.g Eutrema salsugineum HOM05D000428 ORTHO05D005608 4.1e-25 119.0 91 69.2
Sp3g31970 Schrenkiella parvula HOM05D000428 ORTHO05D005608 5.3e-25 118.6 136 55.9
Oeu037891.1 Olea europaea HOM05D000428 ORTHO05D005608 7.0e-25 118.2 138 58.0
C07p04290 Brassica napus HOM05D000428 ORTHO05D005608 1.6e-24 117.1 136 52.2
ATR0733G122 Amborella trichopoda HOM05D000428 ORTHO05D005608 7.7e-24 114.8 67 83.6
TAR628G0051 Trochodendron aralioides HOM05D000428 ORTHO05D005608 7.7e-24 114.8 137 50.4
AagrBONN_evm.TU.Sc2ySwM_117.1742 Anthoceros agrestis HOM05D000428 ORTHO05D005608 1.0e-23 114.4 151 52.3
Mapoly0043s0056 Marchantia polymorpha HOM05D000428 ORTHO05D005608 5.0e-23 112.1 84 71.4
GSVIVG01018991001 Vitis vinifera HOM05D000428 ORTHO05D005608 5.0e-23 112.1 59 89.8
AL3G46120 Arabidopsis lyrata HOM05D000428 ORTHO05D005608 2.5e-22 109.8 132 48.5
Pp3c12_13810 Physcomitrium patens HOM05D000428 ORTHO05D005608 4.2e-22 109.0 116 58.6
AagrBONN_evm.TU.Sc2ySwM_228.3498 Anthoceros agrestis HOM05D000428 ORTHO05D005608 3.6e-21 105.9 152 52.0
Oeu021560.1 Olea europaea HOM05D000428 ORTHO05D005608 1.0e-20 104.4 118 52.5
CBR_g39039 Chara braunii HOM05D000428 ORTHO05D005608 4.0e-20 102.4 60 80.0
FvH4_7g22430 Fragaria vesca HOM05D000428 ORTHO05D005608 1.5e-19 100.5 134 49.3
Haze_25370 Corylus avellana HOM05D000428 ORTHO05D005608 1.7e-18 97.1 80 65.0
Carub.0003s2855 Capsella rubella HOM05D000428 ORTHO05D005608 1.1e-17 94.4 103 55.3
Carub.0124s0001 Capsella rubella HOM05D000428 ORTHO05D005608 1.1e-17 94.4 110 52.7
Cre06.g254800 Chlamydomonas reinhardtii HOM05D000428 ORTHO05D005608 1.5e-14 84.0 100 53.0
MCO05G316 Micromonas commoda HOM05D000428 ORTHO05D005608 2.1e-13 80.1 55 69.1
SGA_v2.0_scaffold85G26723 Striga asiatica HOM05D000428 ORTHO05D005608 2.3e-12 76.6 57 70.2
Gohir.A10G094825 Gossypium hirsutum HOM05D000428 ORTHO05D005608 9.8e-11 71.2 33 97.0
FAN01G1501 Fragaria x ananassa HOM05D000428 ORTHO05D005608 2.2e-10 70.1 72 51.4
Haze_27247 Corylus avellana HOM05D000428 ORTHO05D005608 1.1e-09 67.8 130 39.2
Haze_25371 Corylus avellana HOM05D000428 ORTHO05D005608 3.1e-09 66.2 101 43.6
Sopen12g021270 Solanum pennellii HOM05D002266 ORTHO05D010337 2.3e-07 60.1 58 48.3
PRCOL_00003038 Prasinoderma coloniale HOM05D000428 ORTHO05D005608 5.0e-07 58.9 109 39.4
Solyc12g042330.1 Solanum lycopersicum HOM05D000428 ORTHO05D036455 5.0e-07 58.9 58 46.6
PGSC0003DMG400046993 Solanum tuberosum HOM05D000428 ORTHO05D036455 8.6e-07 58.2 57 47.4
FAN01G0105 Fragaria x ananassa HOM05D000428 ORTHO05D005608 1.9e-06 57.0 32 84.4


User provided reference genes

Program Settings