Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_25985 Corylus avellana HOM05D001514 ORTHO05D005209 2.5e-147 525.4 260 100.0
Haze_25993 Corylus avellana HOM05D001514 ORTHO05D005209 2.5e-147 525.4 260 100.0
Haze_10270 Corylus avellana HOM05D001514 ORTHO05D005209 1.7e-116 422.9 260 83.5
QL11p000460 Quercus lobata HOM05D001514 ORTHO05D005209 1.1e-107 393.7 259 76.8
CiPaw.03G207800 Carya illinoinensis HOM05D001514 ORTHO05D005209 1.9e-107 392.9 260 76.5
Ciclev10012695m.g Citrus clementina HOM05D001514 ORTHO05D005209 1.9e-102 376.3 260 71.5
CSS0005970 Camellia sinensis var. sinensis HOM05D001514 ORTHO05D005209 9.3e-102 374.0 260 70.8
Potri.006G143400 Populus trichocarpa HOM05D001514 ORTHO05D005209 9.3e-102 374.0 260 71.2
Prupe.7G201200 Prunus persica HOM05D001514 ORTHO05D005209 2.7e-101 372.5 256 72.3
Thecc.09G079100 Theobroma cacao HOM05D001514 ORTHO05D005209 2.7e-101 372.5 260 71.2
Manes.03G199800 Manihot esculenta HOM05D001514 ORTHO05D005209 7.8e-101 370.9 260 71.9
TWI60G0494 Tripterygium wilfordii HOM05D001514 ORTHO05D005209 1.7e-100 369.8 260 70.8
TAR626G0523 Trochodendron aralioides HOM05D001514 ORTHO05D005209 3.0e-100 369.0 252 73.4
TAR626G1304 Trochodendron aralioides HOM05D001514 ORTHO05D005209 3.0e-100 369.0 252 73.4
Atru.chr7.1692 Acer truncatum HOM05D001514 ORTHO05D005209 1.1e-99 367.1 261 69.7
COL.COLO4_18112 Corchorus olitorius HOM05D001514 ORTHO05D005209 1.3e-98 363.6 260 68.8
TAR383G0900 Trochodendron aralioides HOM05D001514 ORTHO05D005209 3.6e-98 362.1 252 70.6
Dinv42376 Davidia involucrata HOM05D001514 ORTHO05D005209 4.8e-98 361.7 256 69.5
Duzib168G1760 Durio zibethinus HOM05D001514 ORTHO05D005209 4.8e-98 361.7 256 70.7
Cpa.g.sc280.6 Carica papaya HOM05D001514 ORTHO05D005209 6.2e-98 361.3 260 71.5
CsaV3_2G001190 Cucumis sativus L. HOM05D001514 ORTHO05D005209 9.0e-97 357.5 261 70.5
Hma1.2p1_0928F.1_g237710 Hydrangea macrophylla HOM05D001514 ORTHO05D005209 9.0e-97 357.5 254 69.3
Nn8g38685 Nelumbo nucifera HOM05D001514 ORTHO05D005209 9.0e-97 357.5 252 70.2
Gohir.A13G191300 Gossypium hirsutum HOM05D001514 ORTHO05D005209 1.5e-96 356.7 260 68.1
MD15G1215800 Malus domestica HOM05D001514 ORTHO05D005209 1.3e-95 353.6 261 67.8
Nitab4.5_0011363g0010 Nicotiana tabacum HOM05D001514 ORTHO05D005209 2.2e-95 352.8 259 67.2
GSVIVG01015097001 Vitis vinifera HOM05D001514 ORTHO05D005209 2.9e-95 352.4 261 67.8
Cc06_g12020 Coffea canephora HOM05D001514 ORTHO05D005209 3.8e-95 352.1 260 66.5
Eucgr.C00825 Eucalyptus grandis HOM05D001514 ORTHO05D005209 3.8e-95 352.1 260 66.9
MD15G1215700 Malus domestica HOM05D001514 ORTHO05D005209 4.9e-95 351.7 260 66.9
Gohir.D13G196700 Gossypium hirsutum HOM05D001514 ORTHO05D005209 4.2e-94 348.6 260 67.3
Sabra06G0113700 Salix brachista HOM05D001514 ORTHO05D005209 4.2e-94 348.6 293 62.5
MBI13_g11335_MAGBIO Magnolia biondii HOM05D001514 ORTHO05D005209 5.4e-94 348.2 252 67.9
Gorai.013G225400 Gossypium raimondii HOM05D001514 ORTHO05D005209 7.1e-94 347.8 260 67.3
AUR62025186 Chenopodium quinoa HOM05D001514 ORTHO05D005209 9.3e-94 347.4 260 63.1
Lj7A685T53 Lonicera japonica HOM05D001514 ORTHO05D005209 1.6e-93 346.7 268 65.7
ClCG11G001470 Citrullus lanatus HOM05D001514 ORTHO05D005209 4.6e-93 345.1 275 65.8
Solyc12g009090.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 7.9e-93 344.4 261 66.7
EL10Ac8g19111 Beta vulgaris HOM05D001514 ORTHO05D005209 1.3e-92 343.6 260 63.8
PGSC0003DMG400000323 Solanum tuberosum HOM05D001514 ORTHO05D005209 1.8e-92 343.2 261 66.3
Sopen12g004040 Solanum pennellii HOM05D001514 ORTHO05D005209 2.3e-92 342.8 261 66.3
Sed0009954 Sechium edule HOM05D001514 ORTHO05D005209 3.9e-92 342.0 257 67.3
Hund08725 Selenicereus undatus HOM05D001514 ORTHO05D005209 5.1e-92 341.7 251 64.1
FvH4_1g08420 Fragaria vesca HOM05D001514 ORTHO05D005209 6.7e-92 341.3 255 66.3
Lsat_1_v5_gn_7_35041 Lactuca sativa HOM05D001514 ORTHO05D005209 1.1e-89 334.0 256 64.8
Nitab4.5_0000073g0250 Nicotiana tabacum HOM05D001514 ORTHO05D005209 1.1e-89 334.0 262 64.5
AL4G21890 Arabidopsis lyrata HOM05D001514 ORTHO05D005209 4.0e-89 332.0 255 65.1
MELO3C004649.2 Cucumis melo HOM05D001514 ORTHO05D005209 4.0e-89 332.0 256 68.8
ECA233G5402 Erigeron canadensis HOM05D001514 ORTHO05D005209 5.3e-89 331.6 257 64.2
MSTRG.6002 Avicennia marina HOM05D001514 ORTHO05D005209 2.0e-88 329.7 260 62.7
Aa31sc437G10 Aethionema arabicum HOM05D001514 ORTHO05D005209 2.6e-88 329.3 255 64.3
SGA_v2.0_scaffold97G29140 Striga asiatica HOM05D001514 ORTHO05D005209 4.5e-88 328.6 260 62.3
RcHm_v2.0_Chr2g0094521 Rosa chinensis HOM05D001514 ORTHO05D005209 7.6e-88 327.8 252 66.7
SalBow6G1458 Salvia bowleyana HOM05D001514 ORTHO05D005209 7.6e-88 327.8 260 62.3
THA.LOC104808891 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 7.6e-88 327.8 260 64.6
Thhalv10002659m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 1.3e-87 327.0 255 64.3
AT2G28230 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 2.2e-87 326.2 255 64.3
HanXRQChr09g0237811 Helianthus annuus HOM05D001514 ORTHO05D005209 2.2e-87 326.2 257 64.2
vmacro06328 Vaccinium macrocarpon HOM05D001514 ORTHO05D005209 2.2e-87 326.2 268 63.1
Sp4g11040 Schrenkiella parvula HOM05D001514 ORTHO05D005209 8.4e-87 324.3 255 63.9
PGR142G1966 Punica granatum HOM05D001514 ORTHO05D005209 4.2e-86 322.0 260 62.7
THA.LOC104826585 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 1.2e-85 320.5 256 62.9
SalBow3G1655 Salvia bowleyana HOM05D001514 ORTHO05D005209 3.5e-85 318.9 260 61.2
Migut.J00937 Erythranthe guttata HOM05D001514 ORTHO05D005209 6.0e-85 318.2 258 61.2
Carub.0004s0911 Capsella rubella HOM05D001514 ORTHO05D005209 1.8e-84 316.6 255 61.2
Nitab4.5_0001866g0080 Nicotiana tabacum HOM05D001514 ORTHO05D005209 6.7e-84 314.7 252 63.9
ATR0598G338 Amborella trichopoda HOM05D001514 ORTHO05D005209 2.5e-83 312.8 252 60.3
BcaB02g10157 Brassica carinata HOM05D001514 ORTHO05D005209 3.3e-83 312.4 254 61.4
Lj4g0013364 Lotus japonicus HOM05D001514 ORTHO05D005209 3.3e-83 312.4 252 60.3
AUR62028988 Chenopodium quinoa HOM05D001514 ORTHO05D005209 9.6e-83 310.8 239 62.8
Ca_21314_v3 Cicer arietinum L. HOM05D001514 ORTHO05D005209 9.6e-83 310.8 256 59.0
Glyma.17G050300 Glycine max HOM05D001514 ORTHO05D005209 3.7e-82 308.9 252 59.9
Psat4g016720 Pisum sativum HOM05D001514 ORTHO05D005209 4.8e-82 308.5 255 58.8
BcaC02g10956 Brassica carinata HOM05D001514 ORTHO05D005209 1.4e-81 307.0 254 60.2
C04p23290 Brassica napus HOM05D001514 ORTHO05D005209 1.4e-81 307.0 254 60.2
Carub.0004s0910 Capsella rubella HOM05D001514 ORTHO05D005209 1.4e-81 307.0 255 58.4
Glyma.13G109300 Glycine max HOM05D001514 ORTHO05D005209 1.8e-81 306.6 252 59.5
arahy.Tifrunner.gnm1.ann1.0DN5L0 Arachis hypogaea HOM05D001514 ORTHO05D005209 6.9e-81 304.7 252 57.9
arahy.Tifrunner.gnm1.ann1.0TW07M Arachis hypogaea HOM05D001514 ORTHO05D005209 6.9e-81 304.7 252 57.9
arahy.Tifrunner.gnm1.ann1.I7BKR8 Arachis hypogaea HOM05D001514 ORTHO05D005209 6.9e-81 304.7 252 57.9
PSO210G4222 Papaver somniferum HOM05D001514 ORTHO05D005209 1.2e-80 303.9 254 58.3
Lalb_Chr07g0181101 Lupinus albus HOM05D001514 ORTHO05D005209 1.5e-80 303.5 260 56.9
PSO386G0176 Papaver somniferum HOM05D001514 ORTHO05D005209 1.5e-80 303.5 254 58.7
A07p18760 Brassica napus HOM05D001514 ORTHO05D005209 4.5e-80 302.0 252 59.1
TPR.G9427 Trifolium pratense HOM05D001514 ORTHO05D005209 5.8e-80 301.6 254 58.7
Medtr4g125510 Medicago truncatula HOM05D001514 ORTHO05D005209 2.2e-79 299.7 260 57.3
Solyc05g041170.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.9e-78 296.6 258 54.7
BolC4t23831H Brassica oleracea HOM05D001514 ORTHO05D005209 2.5e-78 296.2 249 59.4
CDE05G2440 Ceratophyllum demersum HOM05D001514 ORTHO05D005209 2.5e-78 296.2 254 57.1
HPP92_009229 Vanilla planifolia HOM05D001514 ORTHO05D005209 3.2e-78 295.8 253 56.5
Phvul.003G131900 Phaseolus vulgaris HOM05D001514 ORTHO05D005209 9.3e-78 294.3 252 57.1
BraA07t29585Z Brassica rapa HOM05D001514 ORTHO05D005209 1.6e-77 293.5 247 59.1
AT4G09070 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 4.6e-77 292.0 253 56.1
Aqoxy7G01056 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 8.7e-76 287.7 252 55.2
Medtr2g063927 Medicago truncatula HOM05D001514 ORTHO05D005209 1.1e-75 287.3 252 55.6
VMungo1215G3125 Vigna mungo HOM05D001514 ORTHO05D005209 7.4e-75 284.6 257 54.9
Actinidia29922 Actinidia chinensis HOM05D001514 ORTHO05D005209 2.8e-74 282.7 249 59.4
Aqoxy7G01057 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 4.8e-74 282.0 252 54.4
Thhalv10017586m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 4.8e-74 282.0 255 57.3
Sabra06G0112300 Salix brachista HOM05D001514 ORTHO05D005209 9.0e-73 277.7 207 68.6
Peaxi162Scf00928g00034 Petunia axillaris HOM05D001514 ORTHO05D005209 1.2e-72 277.3 255 56.1
CANSAT11G2059 Cannabis sativa HOM05D001514 ORTHO05D005209 2.7e-69 266.2 207 65.2
Solyc10g054950.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.6e-69 265.8 252 52.0
Solyc10g049510.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.5e-67 260.4 253 50.6
CARHR121150 Cardamine hirsuta HOM05D001514 ORTHO05D005209 4.3e-67 258.8 255 53.3
Os09g0443500 Oryza sativa ssp. japonica HOM05D001514 ORTHO05D005209 9.7e-67 257.7 262 47.7
Sc08g0008840 Simmondsia chinensis HOM05D001514 ORTHO05D005209 4.8e-66 255.4 205 62.4
Sc08g0009330 Simmondsia chinensis HOM05D001514 ORTHO05D005209 4.8e-66 255.4 205 62.4
FAN26G1993 Fragaria x ananassa HOM05D001514 ORTHO05D005209 1.4e-65 253.8 203 64.0
Rhsim03G0229200 Rhododendron simsii HOM05D001514 ORTHO05D005209 4.1e-65 252.3 208 62.5
Actinidia38471 Actinidia chinensis HOM05D001514 ORTHO05D005209 1.2e-64 250.8 261 53.6
Zm00001eb314270 Zea mays HOM05D001514 ORTHO05D005209 2.6e-64 249.6 255 47.1
Nitab4.5_0000073g0220 Nicotiana tabacum HOM05D001514 ORTHO05D005209 1.4e-62 243.8 136 83.8
Carub.0006s2765 Capsella rubella HOM05D001514 ORTHO05D005209 4.2e-62 242.3 256 44.5
FAN26G0729 Fragaria x ananassa HOM05D001514 ORTHO05D005209 5.5e-62 241.9 223 58.3
DCAR_024739 Daucus carota HOM05D001514 ORTHO05D005209 1.6e-61 240.4 141 78.7
Solyc10g055100.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.5e-59 233.8 252 47.6
Solyc10g055160.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 9.7e-59 231.1 222 51.4
PGSC0003DMG400027872 Solanum tuberosum HOM05D001514 ORTHO05D005209 1.3e-58 230.7 226 50.9
SMO141G0192 Selaginella moellendorffii HOM05D001514 ORTHO05D005209 3.7e-58 229.2 247 44.9
DCAR_026438 Daucus carota HOM05D001514 ORTHO05D005209 6.3e-58 228.4 147 72.8
Solyc10g055020.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.1e-57 227.6 252 47.2
Mapoly0097s0017 Marchantia polymorpha HOM05D001514 ORTHO05D005209 1.2e-56 224.2 250 42.8
Psat0s2317g0240 Pisum sativum HOM05D001514 ORTHO05D005209 8.5e-55 218.0 248 46.0
Solyc10g054980.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.5e-54 216.5 251 44.6
CAN.G2532.1 Capsicum annuum HOM05D001514 ORTHO05D005209 5.2e-52 208.8 196 54.1
PGSC0003DMG400024425 Solanum tuberosum HOM05D001514 ORTHO05D005209 6.7e-52 208.4 206 50.0
CAN.G1963.7 Capsicum annuum HOM05D001514 ORTHO05D005209 1.5e-51 207.2 202 53.5
Pp3c7_2780 Physcomitrium patens HOM05D001514 ORTHO05D005209 2.2e-50 203.4 245 39.2
Solyc10g055010.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.5e-48 196.1 142 62.7
Psat0s4474g0080 Pisum sativum HOM05D001514 ORTHO05D005209 1.3e-47 194.1 248 41.1
unitig_749.g14240 Utricularia gibba HOM05D001514 ORTHO05D005209 1.7e-47 193.7 188 53.7
Sopen10g024920 Solanum pennellii HOM05D001514 ORTHO05D005209 3.2e-46 189.5 208 46.6
CAN.G299.3 Capsicum annuum HOM05D001514 ORTHO05D005209 5.5e-46 188.7 164 60.4
AagrBONN_evm.TU.Sc2ySwM_344.5098 Anthoceros agrestis HOM05D001514 ORTHO05D005209 5.2e-44 182.2 228 41.2
PGSC0003DMG400040125 Solanum tuberosum HOM05D001514 ORTHO05D005209 4.4e-43 179.1 240 40.8
CAN.G1774.14 Capsicum annuum HOM05D001514 ORTHO05D005209 2.2e-42 176.8 182 50.5
Solyc10g055070.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.0e-40 170.2 200 44.0
MD02G1088400 Malus domestica HOM05D001514 ORTHO05D005209 3.5e-40 169.5 209 47.4
Manes.15G009400 Manihot esculenta HOM05D001514 ORTHO05D005209 3.5e-40 169.5 165 58.2
CBR_g11153 Chara braunii HOM05D001514 ORTHO05D005209 1.3e-39 167.5 257 33.1
PGSC0003DMG400003348 Solanum tuberosum HOM05D001514 ORTHO05D005209 1.4e-36 157.5 168 47.6
Sopen10g024960 Solanum pennellii HOM05D001514 ORTHO05D005209 8.3e-34 148.3 160 47.5
Solyc10g055150.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.1e-33 147.9 170 45.9
Solyc10g049550.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.0e-31 141.4 171 42.7
Solyc10g055130.2 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.3e-30 136.3 154 46.1
Sopen10g024890 Solanum pennellii HOM05D001514 ORTHO05D005209 1.4e-25 120.9 138 46.4
Potri.005G126902 Populus trichocarpa HOM05D001514 ORTHO05D005209 3.8e-23 112.8 81 70.4
Solyc10g055040.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 5.0e-23 112.5 142 43.0
DCAR_024738 Daucus carota HOM05D001514 ORTHO05D005209 1.5e-22 110.9 77 67.5
Sopen12g011120 Solanum pennellii HOM05D001514 ORTHO05D005209 1.2e-19 101.3 81 55.6
Rhsim03G0228900 Rhododendron simsii HOM05D001514 ORTHO05D005209 4.4e-19 99.4 52 80.8
CAN.G1963.4 Capsicum annuum HOM05D001514 ORTHO05D005209 1.3e-18 97.8 130 41.5
Sopen10g024880 Solanum pennellii HOM05D000004 ORTHO05D000002 1.3e-18 97.8 128 43.0
AT2G28020 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 1.7e-15 87.4 68 64.7
Oeu055661.2 Olea europaea HOM05D001514 ORTHO05D005209 1.7e-15 87.4 52 69.2
ECA233G2563 Erigeron canadensis HOM05D000517 ORTHO05D000751 2.1e-13 80.5 97 46.4
BcaC07g40291 Brassica carinata HOM05D001514 ORTHO05D005209 3.7e-10 69.7 45 73.3
C08p34050 Brassica napus HOM05D001514 ORTHO05D005209 3.7e-10 69.7 45 73.3
BolC8t51003H Brassica oleracea HOM05D001514 ORTHO05D005209 4.9e-10 69.3 44 75.0
Solyc12g062270.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 4.6e-08 62.8 143 31.5


User provided reference genes

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